Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002576

Physical Location & Seq

Genomic Coordinates Reverse (-)

63702433 .. 63703455

Gene Structure 1023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG470000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGAAACCACAGATACACTTGTCATTAAGGCTCCTAAGAAAACTCCACTAATATTGAGGATGGTGGTATTACTTTTTACAATGGCTTGTGGTGTTTATATTTGCTTAGTCTGCTTGAAGCAAATAAACCCTAACAAAACGATGATCAAGTTCTTAAACATCAAGGTGATTGACTACGACAACGAATCATGCCCTGATCCTCATCTTGAGCAATGGGAAATCCCCTATGTGCATTACCCAAAACCTCGCACATTTGAGAGGAATGAATGCGCCTGCAATCCGGTACGCTACTTTGCAATATTGTCAATGCAGAGATCAGGGAGTGGATGGTTTGAGACATTGTTGAATAATCACACTAATGTAAGTTCTAACGGAGAAATCTTTTCGATCCCGGATAGGAGACGTAATGGTTCTTCAATTTTGAAGAACATGGATAAAGTATACAATCTCGATTGGTTTAGTAGTGCTTCCAGAAATGAGTGTTCTGCAGCTGTTGGATTCAAATGGATGCTTAATCAGGGTTTGATGGAGAACCATGAAGAGATAGTGAAGTACTTCAAGAAAAGAGGCGTGTCTGCAATATTCCTCTTCCGAAGGAACTTACTCCGCAGAATGATTTCTGTACATGCAAATTCTTATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

214

Amino Acids

24.9

Weight (kDa)

9.17

Isoelectric Point (pI)

53.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15730 AT2G15730 AT2G15730 AT4G34420
fragaria_vesca	FvH4_2g06650 FvH4_2g06650 FvH4_2g34850 FvH4_2g34850 FvH4_2g34850 FvH4_2g34850 FvH4_2g34850
malus_domestica	MD00G1187600.v1.1 MD05G1076200.v1.1 MD10G1090800.v1.1
prunus_persica	Prupe.1G440400_v2.0.a1 Prupe.1G440400_v2.0.a1 Prupe.8G119400_v2.0.a1 Prupe.8G119400_v2.0.a1
pyrus_communis	pycom05g06960 pycom08g08720 pycom10g07430
rosa_chinensis	RchiOBHm_Chr6g0258691 RchiOBHm_Chr6g0307191
rosa_laevigata	RLG00000010728 RLG00000014589
rosa_multiflora	Rmu_sc0000031.1_g000004 Rmu_sc0018893.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161090 Rroxscaffold_7G00206020
rosa_rugosa	Rorug05G0582800 Rorug06G0357600
rosa_samantha	Rh6AG099300 Rh6AG468200 Rh6BG091000 Rh6BG432300 Rh6CG088300 Rh6CG483400 Rh6DG082600 Rh6DG470000
rosa_wichuraiana	Rw6G008620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	441
AciI	CCGC	1 cut(s)	607
AclWI	GGATC	2 cut(s)	191, 382
AcsI	RAATTY	1 cut(s)	631
AfaI	GTAC	3 cut(s)	285, 554, 624
AgsI	TTSAA	6 cut(s)	118, 346, 417, 424, 502, 559
AluBI	AGCT	1 cut(s)	491
AluI	AGCT	1 cut(s)	491
Alw26I	GTCTC	2 cut(s)	329, 394
AlwI	GGATC	2 cut(s)	191, 382
ApeKI	GCWGC	1 cut(s)	488
ApoI	RAATTY	1 cut(s)	631
Asp700I	GAANNNNTTC	2 cut(s)	554, 616
AspLEI	GCGC	1 cut(s)	272
AsuC2I	CCSGG	1 cut(s)	392
AsuHPI	GGTGA	1 cut(s)	178
BaeI	ACNNNNGTAYC	1 cut(s)	39
BarI	GAAGNNNNNNTAC	2 cut(s)	397, 429
BbvI	GCAGC	1 cut(s)	500
BccI	CCATC	3 cut(s)	55, 321, 520
BclI	TGATCA	1 cut(s)	144
BcnI	CCSGG	1 cut(s)	392
BcoDI	GTCTC	2 cut(s)	329, 394
BfmI	CTRYAG	1 cut(s)	486
BisI	GCNGC	1 cut(s)	489
BlsI	GCNGC	1 cut(s)	490
BmcAI	AGTACT	1 cut(s)	554
Bme1390I	CCNGG	1 cut(s)	392
BmiI	GGNNCC	1 cut(s)	33
BmrFI	CCNGG	1 cut(s)	392
BmsI	GCATC	1 cut(s)	498
BpuEI	CTTGAG	1 cut(s)	227
BpuMI	CCSGG	1 cut(s)	392
BsaBI	GATNNNNATC	1 cut(s)	201
BsaWI	WCCGGW	1 cut(s)	280
Bse3DI	GCAATG	1 cut(s)	218
Bse8I	GATNNNNATC	1 cut(s)	201
BseGI	GGATG	3 cut(s)	66, 332, 513
BseJI	GATNNNNATC	1 cut(s)	201
BseMI	GCAATG	1 cut(s)	218
BseXI	GCAGC	1 cut(s)	500
BsiSI	CCGG	2 cut(s)	281, 392
BsmAI	GTCTC	2 cut(s)	329, 394
BsmBI	CGTCTC	1 cut(s)	394
BsmI	GAATGC	1 cut(s)	272
Bsp1407I	TGTACA	1 cut(s)	622
Bsp143I	GATC	4 cut(s)	144, 196, 314, 387
BspACI	CCGC	1 cut(s)	607
BspLI	GGNNCC	1 cut(s)	33
BspMAI	CTGCAG	1 cut(s)	490
BspPI	GGATC	2 cut(s)	191, 382
BsrDI	GCAATG	1 cut(s)	218
BsrGI	TGTACA	1 cut(s)	622
BssMI	GATC	4 cut(s)	144, 196, 314, 387
BssNAI	GTATAC	1 cut(s)	442
Bst1107I	GTATAC	1 cut(s)	442
Bst6I	CTCTTC	2 cut(s)	534, 593
BstAUI	TGTACA	1 cut(s)	622
BstC8I	GCNNGC	1 cut(s)	274
BstDEI	CTNAG	2 cut(s)	36, 106
BstF5I	GGATG	3 cut(s)	66, 332, 513
BstHHI	GCGC	1 cut(s)	272
BstKTI	GATC	4 cut(s)	147, 199, 317, 390
BstMAI	GTCTC	2 cut(s)	329, 394
BstMBI	GATC	4 cut(s)	144, 196, 314, 387
BstMWI	GCNNNNNNNGC	1 cut(s)	111
BstNSI	RCATGY	1 cut(s)	629
BstSCI	CCNGG	1 cut(s)	390
BstSFI	CTRYAG	1 cut(s)	486
BstV1I	GCAGC	1 cut(s)	500
BstZ17I	GTATAC	1 cut(s)	442
BtsCI	GGATG	3 cut(s)	66, 332, 513
Cac8I	GCNNGC	1 cut(s)	274
CfoI	GCGC	1 cut(s)	272
Csp6I	GTAC	3 cut(s)	284, 553, 623
CspCI	CAANNNNNGTGG	2 cut(s)	36, 71
CviAII	CATG	4 cut(s)	189, 430, 536, 626
CviJI	RGCY	3 cut(s)	32, 86, 491
CviKI_1	RGCY	3 cut(s)	32, 86, 491
CviQI	GTAC	3 cut(s)	284, 553, 623
DdeI	CTNAG	2 cut(s)	36, 106
DpnI	GATC	4 cut(s)	146, 198, 316, 389
DpnII	GATC	4 cut(s)	144, 196, 314, 387
Eam1104I	CTCTTC	2 cut(s)	534, 593
EarI	CTCTTC	2 cut(s)	534, 593
Esp3I	CGTCTC	1 cut(s)	394
FaeI	CATG	4 cut(s)	192, 433, 539, 629
FaiI	YATR	8 cut(s)	99, 190, 228, 431, 442, 537, 627, 639
FatI	CATG	4 cut(s)	188, 429, 535, 625
FbaI	TGATCA	1 cut(s)	144
FblI	GTMKAC	1 cut(s)	441
Fnu4HI	GCNGC	1 cut(s)	489
FokI	GGATG	3 cut(s)	73, 339, 520
Fsp4HI	GCNGC	1 cut(s)	489
GlaI	GCGC	1 cut(s)	271
GluI	GCNGC	1 cut(s)	489
HapII	CCGG	2 cut(s)	281, 392
HhaI	GCGC	1 cut(s)	272
Hin1II	CATG	4 cut(s)	192, 433, 539, 629
Hin6I	GCGC	1 cut(s)	270
HinP1I	GCGC	1 cut(s)	270
HinfI	GANTC	2 cut(s)	185, 498
HpaII	CCGG	2 cut(s)	281, 392
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	1 cut(s)	442
Hpy188I	TCNGA	1 cut(s)	593
Hpy188III	TCNNGA	4 cut(s)	206, 449, 471, 559
Hpy8I	GTNNAC	1 cut(s)	442
HpyAV	CCTTC	1 cut(s)	588
HpyCH4IV	ACGT	1 cut(s)	403
HpyCH4V	TGCA	7 cut(s)	232, 276, 296, 310, 488, 578, 629
HpyF10VI	GCNNNNNNNGC	1 cut(s)	111
HpyF3I	CTNAG	2 cut(s)	36, 106
HpySE526I	ACGT	1 cut(s)	403
Hsp92II	CATG	4 cut(s)	192, 433, 539, 629
HspAI	GCGC	1 cut(s)	270
Ksp22I	TGATCA	1 cut(s)	144
Kzo9I	GATC	4 cut(s)	144, 196, 314, 387
LmnI	GCTCC	1 cut(s)	37
LpnPI	CCDG	7 cut(s)	207, 286, 294, 303, 405, 484, 503
Lsp1109I	GCAGC	1 cut(s)	500
LweI	GCATC	1 cut(s)	498
MaeII	ACGT	1 cut(s)	403
MalI	GATC	4 cut(s)	146, 198, 316, 389
MboI	GATC	4 cut(s)	144, 196, 314, 387
MboII	GAAGA	4 cut(s)	405, 436, 551, 580
MluCI	AATT	2 cut(s)	417, 631
MmeI	TCCRAC	1 cut(s)	475
MnlI	CCTC	6 cut(s)	51, 210, 252, 255, 560, 596
MroXI	GAANNNNTTC	2 cut(s)	554, 616
MseI	TTAA	3 cut(s)	27, 155, 513
MslI	CAYNNNNRTG	2 cut(s)	164, 357
MspA1I	CMGCKG	1 cut(s)	491
MspI	CCGG	2 cut(s)	281, 392
MspR9I	CCNGG	1 cut(s)	392
Mva1269I	GAATGC	1 cut(s)	272
MwoI	GCNNNNNNNGC	1 cut(s)	111
NciI	CCSGG	1 cut(s)	392
NdeII	GATC	4 cut(s)	144, 196, 314, 387
NlaIII	CATG	4 cut(s)	192, 433, 539, 629
NlaIV	GGNNCC	1 cut(s)	33
NspI	RCATGY	1 cut(s)	629
PctI	GAATGC	1 cut(s)	272
PdmI	GAANNNNTTC	2 cut(s)	554, 616
PfeI	GAWTC	2 cut(s)	185, 498
PfoI	TCCNGGA	1 cut(s)	390
PkrI	GCNGC	1 cut(s)	490
PspN4I	GGNNCC	1 cut(s)	33
PstI	CTGCAG	1 cut(s)	490
PvuII	CAGCTG	1 cut(s)	491
RsaI	GTAC	3 cut(s)	285, 554, 624
RsaNI	GTAC	3 cut(s)	284, 553, 623
RseI	CAYNNNNRTG	2 cut(s)	164, 357
SaqAI	TTAA	3 cut(s)	27, 155, 513
SatI	GCNGC	1 cut(s)	489
Sau3AI	GATC	4 cut(s)	144, 196, 314, 387
ScaI	AGTACT	1 cut(s)	554
ScrFI	CCNGG	1 cut(s)	392
SetI	ASST	4 cut(s)	168, 247, 406, 493
SfaNI	GCATC	1 cut(s)	498
SfcI	CTRYAG	1 cut(s)	486
SmiMI	CAYNNNNRTG	2 cut(s)	164, 357
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	2 cut(s)	417, 631
SsiI	CCGC	1 cut(s)	607
SspI	AATATT	3 cut(s)	54, 300, 582
StyD4I	CCNGG	1 cut(s)	390
TaiI	ACGT	1 cut(s)	406
TaqI	TCGA	2 cut(s)	386, 450
TasI	AATT	2 cut(s)	417, 631
TatI	WGTACW	2 cut(s)	552, 622
TfiI	GAWTC	2 cut(s)	185, 498
Tru1I	TTAA	3 cut(s)	27, 155, 513
Tru9I	TTAA	3 cut(s)	27, 155, 513
TseI	GCWGC	1 cut(s)	488
TspDTI	ATGAA	2 cut(s)	279, 552
TspGWI	ACGGA	1 cut(s)	387
XapI	RAATTY	1 cut(s)	631
XceI	RCATGY	1 cut(s)	629
XmiI	GTMKAC	1 cut(s)	441
XmnI	GAANNNNTTC	2 cut(s)	554, 616
ZrmI	AGTACT	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.