Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002576

Physical Location & Seq

Genomic Coordinates Forward (+)

14611650 .. 14615345

Gene Structure 3696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G008620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGCTGATGATCACTGCTCTTTCACCAAGGATATATTAAAGACGCCAAAGAAATCGCCTTTGGTGCTGAGGACGATTGTTGTGTTGTTTGTAATGGTCTGTGGTGTCTATATATGCTCGATTTGTTTAAAGCAAATCAAGACTGGTACCACACTCAGATTCTTAAGCATCCCCGAGGTGATTCAAAGGCCTTGCCAGAAACCTGATATTGAACCGGAAGAAGCGCCTTATGTGCACTTCCCAAAGCCCACAACTTATAGCAGGGCTGAATGTGCGTGCAATCCTGTGAGATATTTTGCAATTTTCTCGATGCAGAGGTCTGGGAGTGGTTGGTTTGAGACGCTATTGAATAATCATACTAACATAAGCTCAAATGGGGAGATTTTCTCTGTTAAAGTCAGGAGAAGTAACATGTCAACAATTACAGAGACTTTGGACAGAGTATACAATCTAGATTGGTTCAGTAGTGCCTCAAAGAATGAGTGCACAGCTGCAGTTGGCTTAAAGTGGATGCTTAATCAGGGATTGATGCAGAATCATGAACAAATAGTAGAGTACTTCAACACTCGAGGTGTTGCTGCTATCTTTCTCTTTCGAAGAAATCTGTTGCGTAGGTTGATCTCCGTGCTTGCAAATTCTTATGATCGAGAGGCGAAGCCACTGAATGGAACCCACAAATCTCACGTGCACTCTCATCAAGAGGCTGAGATACTTGCAAAATACAAGCCTAAAATCAATGCAACTTTGCTTATAGCCAACCTGAAGCAAGTTGAGAATACAACTGCCAAAGCATTGGAATATTTCAAGAACACCCGACATATTATCCTGTATTATGAGGATGTTGTTAAAAACCGCACTAAATTAAGAGACGTTCAAGATCTTCTCAAGGTTCCACAAAGGGATTTGAAGAGTCGTCAAGTGAAGATACACAAAGGCTCCTTGTCTAATCAGATTGAGAATTGGGGTGATGTCCAAAAGGCACTTAATGGAACACATTATGAAAGCTTTCTCCATGCAGATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

341

Amino Acids

39.15

Weight (kDa)

9.38

Isoelectric Point (pI)

40.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15730 AT2G15730 AT2G15730 AT4G34420
fragaria_vesca	FvH4_2g06650 FvH4_2g06650 FvH4_2g34850 FvH4_2g34850 FvH4_2g34850 FvH4_2g34850 FvH4_2g34850
malus_domestica	MD00G1187600.v1.1 MD05G1076200.v1.1 MD10G1090800.v1.1
prunus_persica	Prupe.1G440400_v2.0.a1 Prupe.1G440400_v2.0.a1 Prupe.8G119400_v2.0.a1 Prupe.8G119400_v2.0.a1
pyrus_communis	pycom05g06960 pycom08g08720 pycom10g07430
rosa_chinensis	RchiOBHm_Chr6g0258691 RchiOBHm_Chr6g0307191
rosa_laevigata	RLG00000010728 RLG00000014589
rosa_multiflora	Rmu_sc0000031.1_g000004 Rmu_sc0018893.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161090 Rroxscaffold_7G00206020
rosa_rugosa	Rorug05G0582800 Rorug06G0357600
rosa_samantha	Rh6AG099300 Rh6AG468200 Rh6BG091000 Rh6BG432300 Rh6CG088300 Rh6CG483400 Rh6DG082600 Rh6DG470000
rosa_wichuraiana	Rw6G008620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	146
AccB1I	GGYRCC	1 cut(s)	146
AccB7I	CCANNNNNTGG	1 cut(s)	665
AccI	GTMKAC	1 cut(s)	444
AciI	CCGC	1 cut(s)	853
AcsI	RAATTY	1 cut(s)	634
AcuI	CTGAAG	1 cut(s)	782
AcvI	CACGTG	1 cut(s)	685
AcyI	GRCGYC	1 cut(s)	44
AfaI	GTAC	2 cut(s)	148, 557
AfiI	CCNNNNNNNGG	1 cut(s)	665
AflII	CTTAAG	1 cut(s)	163
AflIII	ACRYGT	1 cut(s)	411
AgsI	TTSAA	7 cut(s)	185, 212, 349, 562, 805, 875, 907
AjuI	GAANNNNNNNTTGG	2 cut(s)	44, 76
AluBI	AGCT	3 cut(s)	369, 491, 1005
AluI	AGCT	3 cut(s)	369, 491, 1005
Alw21I	GWGCWC	3 cut(s)	237, 488, 690
Alw26I	GTCTC	3 cut(s)	332, 422, 861
Alw44I	GTGCAC	3 cut(s)	233, 484, 686
Ama87I	CYCGRG	2 cut(s)	173, 567
AoxI	GGCC	1 cut(s)	188
ApaLI	GTGCAC	3 cut(s)	233, 484, 686
ApeKI	GCWGC	2 cut(s)	491, 578
ApoI	RAATTY	1 cut(s)	634
Asp700I	GAANNNNTTC	1 cut(s)	1005
Asp718I	GGTACC	1 cut(s)	146
AspLEI	GCGC	1 cut(s)	226
AsuHPI	GGTGA	3 cut(s)	16, 190, 977
AsuII	TTCGAA	1 cut(s)	595
AvaI	CYCGRG	2 cut(s)	173, 567
BaeGI	GKGCMC	3 cut(s)	237, 488, 690
BanI	GGYRCC	1 cut(s)	146
BbrPI	CACGTG	1 cut(s)	685
Bbv12I	GWGCWC	3 cut(s)	237, 488, 690
BbvCI	CCTCAGC	1 cut(s)	68
BbvI	GCAGC	2 cut(s)	478, 565
BcgI	CGANNNNNNTGC	2 cut(s)	288, 322
BclI	TGATCA	1 cut(s)	10
BcoDI	GTCTC	3 cut(s)	332, 422, 861
BfaI	CTAG	1 cut(s)	452
BfmI	CTRYAG	1 cut(s)	492
BfoI	RGCGCY	1 cut(s)	227
BfrI	CTTAAG	1 cut(s)	163
BglII	AGATCT	1 cut(s)	877
BisI	GCNGC	2 cut(s)	492, 579
BlsI	GCNGC	2 cut(s)	493, 580
BmcAI	AGTACT	1 cut(s)	557
BmeT110I	CYCGRG	2 cut(s)	173, 567
BmiI	GGNNCC	4 cut(s)	148, 670, 891, 937
BmsI	GCATC	4 cut(s)	177, 300, 501, 519
BplI	GAGNNNNNCTC	2 cut(s)	371, 403
Bpu10I	CCTNAGC	1 cut(s)	68
Bpu14I	TTCGAA	1 cut(s)	595
BpuEI	CTTGAG	1 cut(s)	869
BsaAI	YACGTR	1 cut(s)	685
BsaHI	GRCGYC	1 cut(s)	44
BsaJI	CCNNGG	2 cut(s)	27, 174
BsaWI	WCCGGW	1 cut(s)	214
BsaXI	ACNNNNNCTCC	2 cut(s)	920, 950
Bsc4I	CCNNNNNNNGG	1 cut(s)	665
Bse1I	ACTGG	1 cut(s)	148
BseDI	CCNNGG	2 cut(s)	27, 174
BseGI	GGATG	3 cut(s)	168, 516, 844
BseLI	CCNNNNNNNGG	1 cut(s)	665
BseMII	CTCAG	3 cut(s)	59, 169, 696
BseNI	ACTGG	1 cut(s)	148
BseSI	GKGCMC	3 cut(s)	237, 488, 690
BseXI	GCAGC	2 cut(s)	478, 565
BshFI	GGCC	1 cut(s)	190
BshNI	GGYRCC	1 cut(s)	146
BsiHKAI	GWGCWC	3 cut(s)	237, 488, 690
BsiHKCI	CYCGRG	2 cut(s)	173, 567
BsiSI	CCGG	1 cut(s)	215
BslI	CCNNNNNNNGG	1 cut(s)	665
BsmAI	GTCTC	3 cut(s)	332, 422, 861
BsmBI	CGTCTC	2 cut(s)	332, 861
BsnI	GGCC	1 cut(s)	190
BsoBI	CYCGRG	2 cut(s)	173, 567
Bsp119I	TTCGAA	1 cut(s)	595
Bsp1286I	GDGCHC	3 cut(s)	237, 488, 690
Bsp143I	GATC	4 cut(s)	10, 618, 643, 877
BspACI	CCGC	1 cut(s)	853
BspANI	GGCC	1 cut(s)	190
BspCNI	CTCAG	3 cut(s)	60, 168, 697
BspHI	TCATGA	1 cut(s)	538
BspLI	GGNNCC	4 cut(s)	148, 670, 891, 937
BspMAI	CTGCAG	1 cut(s)	496
BspT104I	TTCGAA	1 cut(s)	595
BspT107I	GGYRCC	1 cut(s)	146
BspTI	CTTAAG	1 cut(s)	163
BsrI	ACTGG	1 cut(s)	148
BssECI	CCNNGG	2 cut(s)	27, 174
BssMI	GATC	4 cut(s)	10, 618, 643, 877
BssNAI	GTATAC	1 cut(s)	445
BssNI	GRCGYC	1 cut(s)	44
BssT1I	CCWWGG	1 cut(s)	27
Bst1107I	GTATAC	1 cut(s)	445
Bst6I	CTCTTC	1 cut(s)	902
BstACI	GRCGYC	1 cut(s)	44
BstAFI	CTTAAG	1 cut(s)	163
BstBAI	YACGTR	1 cut(s)	685
BstBI	TTCGAA	1 cut(s)	595
BstC8I	GCNNGC	2 cut(s)	277, 630
BstDEI	CTNAG	3 cut(s)	68, 155, 705
BstF5I	GGATG	3 cut(s)	168, 516, 844
BstH2I	RGCGCY	1 cut(s)	227
BstHHI	GCGC	1 cut(s)	226
BstKTI	GATC	4 cut(s)	13, 621, 646, 880
BstMAI	GTCTC	3 cut(s)	332, 422, 861
BstMBI	GATC	4 cut(s)	10, 618, 643, 877
BstMWI	GCNNNNNNNGC	3 cut(s)	64, 232, 272
BstNSI	RCATGY	1 cut(s)	415
BstSFI	CTRYAG	1 cut(s)	492
BstSLI	GKGCMC	3 cut(s)	237, 488, 690
BstV1I	GCAGC	2 cut(s)	478, 565
BstX2I	RGATCY	1 cut(s)	877
BstXI	CCANNNNNNTGG	1 cut(s)	793
BstYI	RGATCY	1 cut(s)	877
BstZ17I	GTATAC	1 cut(s)	445
BsuRI	GGCC	1 cut(s)	190
BtsCI	GGATG	3 cut(s)	168, 516, 844
BtsI	GCAGTG	1 cut(s)	13
BtsIMutI	CAGTG	2 cut(s)	13, 659
Cac8I	GCNNGC	2 cut(s)	277, 630
CciI	TCATGA	1 cut(s)	538
CfoI	GCGC	1 cut(s)	226
CseI	GACGC	2 cut(s)	52, 349
Csp6I	GTAC	2 cut(s)	147, 556
CviAII	CATG	3 cut(s)	412, 539, 1013
CviQI	GTAC	2 cut(s)	147, 556
DdeI	CTNAG	3 cut(s)	68, 155, 705
DpnI	GATC	4 cut(s)	12, 620, 645, 879
DpnII	GATC	4 cut(s)	10, 618, 643, 877
DraI	TTTAAA	1 cut(s)	129
Eam1104I	CTCTTC	1 cut(s)	902
EarI	CTCTTC	1 cut(s)	902
Eco130I	CCWWGG	1 cut(s)	27
Eco147I	AGGCCT	1 cut(s)	190
Eco57I	CTGAAG	1 cut(s)	782
Eco72I	CACGTG	1 cut(s)	685
Eco88I	CYCGRG	2 cut(s)	173, 567
EcoT14I	CCWWGG	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	27
Esp3I	CGTCTC	2 cut(s)	332, 861
FaeI	CATG	3 cut(s)	415, 542, 1016
FatI	CATG	3 cut(s)	411, 538, 1012
FbaI	TGATCA	1 cut(s)	10
FblI	GTMKAC	1 cut(s)	444
Fnu4HI	GCNGC	2 cut(s)	492, 579
FokI	GGATG	3 cut(s)	155, 523, 851
Fsp4HI	GCNGC	2 cut(s)	492, 579
FspBI	CTAG	1 cut(s)	452
GlaI	GCGC	1 cut(s)	225
GluI	GCNGC	2 cut(s)	492, 579
HaeII	RGCGCY	1 cut(s)	227
HaeIII	GGCC	1 cut(s)	190
HapII	CCGG	1 cut(s)	215
HgaI	GACGC	2 cut(s)	52, 349
HhaI	GCGC	1 cut(s)	226
Hin1I	GRCGYC	1 cut(s)	44
Hin1II	CATG	3 cut(s)	415, 542, 1016
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HincII	GTYRAC	1 cut(s)	417
HindII	GTYRAC	1 cut(s)	417
HindIII	AAGCTT	1 cut(s)	1003
HinfI	GANTC	4 cut(s)	159, 181, 535, 910
HpaII	CCGG	1 cut(s)	215
HphI	GGTGA	3 cut(s)	16, 190, 977
Hpy166II	GTNNAC	5 cut(s)	235, 417, 445, 486, 688
Hpy188I	TCNGA	2 cut(s)	158, 951
Hpy188III	TCNNGA	9 cut(s)	139, 307, 400, 452, 539, 647, 698, 805, 875
Hpy8I	GTNNAC	5 cut(s)	235, 417, 445, 486, 688
HpyCH4IV	ACGT	2 cut(s)	684, 870
HpyF10VI	GCNNNNNNNGC	3 cut(s)	64, 232, 272
HpyF3I	CTNAG	3 cut(s)	68, 155, 705
HpySE526I	ACGT	2 cut(s)	684, 870
Hsp92I	GRCGYC	1 cut(s)	44
Hsp92II	CATG	3 cut(s)	415, 542, 1016
HspAI	GCGC	1 cut(s)	224
KpnI	GGTACC	1 cut(s)	150
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	4 cut(s)	10, 618, 643, 877
LmnI	GCTCC	1 cut(s)	941
Lsp1109I	GCAGC	2 cut(s)	478, 565
LweI	GCATC	4 cut(s)	177, 300, 501, 519
MaeI	CTAG	1 cut(s)	452
MaeII	ACGT	2 cut(s)	684, 870
MaeIII	GTNAC	1 cut(s)	407
MalI	GATC	4 cut(s)	12, 620, 645, 879
MboI	GATC	4 cut(s)	10, 618, 643, 877
MboII	GAAGA	5 cut(s)	230, 609, 872, 919, 934
MflI	RGATCY	1 cut(s)	877
MhlI	GDGCHC	3 cut(s)	237, 488, 690
MluCI	AATT	5 cut(s)	300, 420, 634, 860, 958
MlyI	GAGTC	1 cut(s)	919
MnlI	CCTC	8 cut(s)	63, 169, 309, 481, 563, 643, 694, 829
MroXI	GAANNNNTTC	1 cut(s)	1005
MseI	TTAA	9 cut(s)	38, 128, 164, 393, 503, 516, 846, 863, 984
MspA1I	CMGCKG	1 cut(s)	491
MspCI	CTTAAG	1 cut(s)	163
MspI	CCGG	1 cut(s)	215
MwoI	GCNNNNNNNGC	3 cut(s)	64, 232, 272
NdeII	GATC	4 cut(s)	10, 618, 643, 877
NlaIII	CATG	3 cut(s)	415, 542, 1016
NlaIV	GGNNCC	4 cut(s)	148, 670, 891, 937
NspI	RCATGY	1 cut(s)	415
NspV	TTCGAA	1 cut(s)	595
PaeR7I	CTCGAG	1 cut(s)	567
PagI	TCATGA	1 cut(s)	538
PceI	AGGCCT	1 cut(s)	190
PciI	ACATGT	1 cut(s)	411
PdmI	GAANNNNTTC	1 cut(s)	1005
PfeI	GAWTC	3 cut(s)	159, 181, 535
PflMI	CCANNNNNTGG	1 cut(s)	665
PkrI	GCNGC	2 cut(s)	493, 580
PleI	GAGTC	1 cut(s)	918
PmaCI	CACGTG	1 cut(s)	685
PmlI	CACGTG	1 cut(s)	685
PpsI	GAGTC	1 cut(s)	918
Ppu21I	YACGTR	1 cut(s)	685
PscI	ACATGT	1 cut(s)	411
PspCI	CACGTG	1 cut(s)	685
PspN4I	GGNNCC	4 cut(s)	148, 670, 891, 937
PspXI	VCTCGAGB	1 cut(s)	567
PstI	CTGCAG	1 cut(s)	496
PsuI	RGATCY	1 cut(s)	877
PvuII	CAGCTG	1 cut(s)	491
RsaI	GTAC	2 cut(s)	148, 557
RsaNI	GTAC	2 cut(s)	147, 556
SaqAI	TTAA	9 cut(s)	38, 128, 164, 393, 503, 516, 846, 863, 984
SatI	GCNGC	2 cut(s)	492, 579
Sau3AI	GATC	4 cut(s)	10, 618, 643, 877
ScaI	AGTACT	1 cut(s)	557
SchI	GAGTC	1 cut(s)	919
SduI	GDGCHC	3 cut(s)	237, 488, 690
SfaNI	GCATC	4 cut(s)	177, 300, 501, 519
SfcI	CTRYAG	1 cut(s)	492
Sfr274I	CTCGAG	1 cut(s)	567
SfuI	TTCGAA	1 cut(s)	595
SlaI	CTCGAG	1 cut(s)	567
SmlI	CTYRAG	3 cut(s)	163, 567, 884
SmoI	CTYRAG	3 cut(s)	163, 567, 884
Sse9I	AATT	5 cut(s)	300, 420, 634, 860, 958
SseBI	AGGCCT	1 cut(s)	190
SsiI	CCGC	1 cut(s)	853
SspI	AATATT	1 cut(s)	800
SspMI	CTAG	1 cut(s)	452
StuI	AGGCCT	1 cut(s)	190
StyI	CCWWGG	1 cut(s)	27
TaiI	ACGT	2 cut(s)	687, 873
TaqI	TCGA	5 cut(s)	119, 308, 568, 595, 646
TasI	AATT	5 cut(s)	300, 420, 634, 860, 958
TatI	WGTACW	1 cut(s)	555
TfiI	GAWTC	3 cut(s)	159, 181, 535
Tru1I	TTAA	9 cut(s)	38, 128, 164, 393, 503, 516, 846, 863, 984
Tru9I	TTAA	9 cut(s)	38, 128, 164, 393, 503, 516, 846, 863, 984
TscAI	CASTG	2 cut(s)	20, 666
TseI	GCWGC	2 cut(s)	491, 578
TspDTI	ATGAA	2 cut(s)	555, 1014
TspGWI	ACGGA	1 cut(s)	613
TspRI	CASTG	2 cut(s)	20, 666
Van91I	CCANNNNNTGG	1 cut(s)	665
Vha464I	CTTAAG	1 cut(s)	163
VneI	GTGCAC	3 cut(s)	233, 484, 686
XapI	RAATTY	1 cut(s)	634
XbaI	TCTAGA	1 cut(s)	451
XceI	RCATGY	1 cut(s)	415
XhoI	CTCGAG	1 cut(s)	567
XmiI	GTMKAC	1 cut(s)	444
XmnI	GAANNNNTTC	1 cut(s)	1005
XspI	CTAG	1 cut(s)	452
ZrmI	AGTACT	1 cut(s)	557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.