Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0007486

Physical Location & Seq

Genomic Coordinates Forward (+)

6975295 .. 6978082

Gene Structure 2788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g08070.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGGAGAGTCATATAAGAAGAAGCATGATGAACAATTGGAATCATTAAAGGATGATCCAGAAGTGAATGACCTTGCCAACAACATAAGAACACGTGCCGAGGCTGTCAACAACATATGTAAGAAAGATGGTTTTTCTATTGCTTGTCTGAAAGAAGTGACGATATTTGTTTCCTACATGAATGGCCAAGCTGCCTCTGCAATCTTGGCATGCAAAAAAGATATATCGATCAGCAACAAGAGCTTCAATCTGGTCGTCAATGAGTACTTGAACAATAGTGAGCAGCTGCTGGATTTTTGTTCTGCATTGGATCAGTTCGTGAAGTCAGCTCGGGATAGTCATTCATATACACAATATGTGGTTCAACAGTTTCTTGAAAGCAAGATGGAAACTGAGTACTGCTTGAAGATTTTGGAGAAACTGAAGAATCTCAAATCCTCTGAAGACATCCATGCTCATTCTGCTGAAAGCTTGCACCAAAAGATCAAAGCTCTGATAACGCACTTTGAAAAGCTGTGCAGGAATTTGAAGCAGGAAATTGTTAAAATTGATGAAGAAAAGAATCGTGTTGGTACCCAGAAGAAACGCACAAGTCTTACATACAAGAGCATTTCTACGATTACTGTGATTTGTGCGGGACTCCTAGGTGCAGATTTCTTACTAGATTTAGCAGACATTGTTTCTGGTATTGTAGATTTTTCTGATGGTGCTTCTGGTATAACGGATGCTGCTTCATGTGCAACTAATAATTCTGCTACTCATCCACAGCTTGAGCCAATACAAGAATATATTAGTAATCATGAGAAAGCTTCAGAATATGCTGTCAAGGCCGGGTTTATGGCAGCTGTTGCAGTACCTTTAAATGCTGGGCATTCATTAGCGATGTCTTATTATGATAAGAAACAAGAGGATTTGGACAACAAGAAGAACGACATAGACACAGTACGTAGAGAAAGTGAGGCATCCATTACAGAGTTGGGTAACATTAAGTTTCGTATTAATCAGGTTGTAAACGAGATAGATTCACTTTTGGCCAAAACCAACACTGCAGTTAAAATGAGTGACGTAGATTTCTTAATGAAGGATATGAAGCAAAAGCTGGAACAGTTCATGAAGAAGATAGACGATTTGGATGCAGAAGCAGTGAAATGCAGCGCCGAAACAATGCAGGCAAGGGATGACGTGCGCAACAGAATCAGACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

402

Amino Acids

44.97

Weight (kDa)

5.71

Isoelectric Point (pI)

33.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF677	PF05055	52 - 210	1.5e-14	Protein of unknown function (DUF677)
DUF677	PF05055	285 - 407	1.5e-13	Protein of unknown function (DUF677)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007486)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08070 FvH4_2g08070
rosa_chinensis	RchiOBHm_Chr0c38g0503091 RchiOBHm_Chr6g0262571
rosa_laevigata	RLG00000014396 RLG00000014398 RLG00000014409 RLG00000014416
rosa_multiflora	Rmu_sc0000596.1_g000026 Rmu_sc0000596.1_g000060 Rmu_sc0003237.1_g000020 Rmu_sc0007280.1_g000009
rosa_roxburghii	Rroxscaffold_7G00205010 Rroxscaffold_7G00205150
rosa_rugosa	Rorug06G0000300
rosa_samantha	Rh6AG119600 Rh6AG120800 Rh6BG113900 Rh6BG117300 Rh6CG112100 Rh6CG115700 Rh6DG101700 Rh6DG104100
rosa_wichuraiana	Rw6G010370 Rw6G010740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1187
Acc65I	GGTACC	1 cut(s)	572
AccB1I	GGYRCC	1 cut(s)	572
AciI	CCGC	1 cut(s)	635
AclWI	GGATC	2 cut(s)	50, 318
AcoI	YGGCCR	2 cut(s)	184, 1032
AcsI	RAATTY	1 cut(s)	523
AcuI	CTGAAG	3 cut(s)	443, 462, 795
AcvI	CACGTG	1 cut(s)	95
AfaI	GTAC	5 cut(s)	266, 398, 574, 855, 945
AflIII	ACRYGT	1 cut(s)	92
AgsI	TTSAA	7 cut(s)	247, 271, 365, 377, 406, 509, 529
AjiI	CACGTC	1 cut(s)	1183
AlwI	GGATC	2 cut(s)	50, 318
AlwNI	CAGNNNCTG	1 cut(s)	289
Ama87I	CYCGRG	1 cut(s)	330
AoxI	GGCC	3 cut(s)	184, 828, 1032
ApeKI	GCWGC	6 cut(s)	191, 283, 286, 728, 842, 1152
ApoI	RAATTY	1 cut(s)	523
AseI	ATTAAT	1 cut(s)	999
Asp718I	GGTACC	1 cut(s)	572
AspA2I	CCTAGG	1 cut(s)	643
AspLEI	GCGC	2 cut(s)	1157, 1188
AsuC2I	CCSGG	1 cut(s)	832
AvaI	CYCGRG	1 cut(s)	330
AvrII	CCTAGG	1 cut(s)	643
BalI	TGGCCA	2 cut(s)	186, 1034
BanI	GGYRCC	1 cut(s)	572
BbrPI	CACGTG	1 cut(s)	95
BbsI	GAAGAC	1 cut(s)	450
BbvI	GCAGC	6 cut(s)	178, 273, 295, 715, 854, 1164
BccI	CCATC	3 cut(s)	122, 379, 698
BcgI	CGANNNNNNTGC	2 cut(s)	1115, 1149
BcnI	CCSGG	1 cut(s)	832
BfaI	CTAG	2 cut(s)	644, 662
BfmI	CTRYAG	1 cut(s)	1047
BfoI	RGCGCY	1 cut(s)	1158
BisI	GCNGC	6 cut(s)	192, 284, 287, 729, 843, 1153
BlnI	CCTAGG	1 cut(s)	643
BlsI	GCNGC	6 cut(s)	193, 285, 288, 730, 844, 1154
BmcAI	AGTACT	2 cut(s)	266, 398
Bme1390I	CCNGG	1 cut(s)	832
BmeT110I	CYCGRG	1 cut(s)	330
BmgBI	CACGTC	1 cut(s)	1183
BmiI	GGNNCC	1 cut(s)	574
BmrFI	CCNGG	1 cut(s)	832
BmsI	GCATC	3 cut(s)	715, 971, 1123
BpiI	GAAGAC	1 cut(s)	450
BpuEI	CTTGAG	1 cut(s)	791
BpuMI	CCSGG	1 cut(s)	832
Bsa29I	ATCGAT	1 cut(s)	227
BsaAI	YACGTR	2 cut(s)	95, 947
BsaJI	CCNNGG	2 cut(s)	99, 643
BseCI	ATCGAT	1 cut(s)	227
BseDI	CCNNGG	2 cut(s)	99, 643
BseGI	GGATG	7 cut(s)	58, 447, 730, 760, 962, 1138, 1183
BseMII	CTCAG	1 cut(s)	384
BseXI	GCAGC	6 cut(s)	178, 273, 295, 715, 854, 1164
BseYI	CCCAGC	1 cut(s)	866
BsgI	GTGCAG	2 cut(s)	538, 669
BshFI	GGCC	3 cut(s)	186, 830, 1034
BshNI	GGYRCC	1 cut(s)	572
BshVI	ATCGAT	1 cut(s)	227
BsiHKCI	CYCGRG	1 cut(s)	330
BsiSI	CCGG	1 cut(s)	831
BslFI	GGGAC	1 cut(s)	651
BsmFI	GGGAC	1 cut(s)	651
BsmI	GAATGC	1 cut(s)	871
BsnI	GGCC	3 cut(s)	186, 830, 1034
BsoBI	CYCGRG	1 cut(s)	330
Bsp143I	GATC	4 cut(s)	55, 228, 310, 483
BspACI	CCGC	1 cut(s)	635
BspANI	GGCC	3 cut(s)	186, 830, 1034
BspCNI	CTCAG	1 cut(s)	385
BspDI	ATCGAT	1 cut(s)	227
BspHI	TCATGA	2 cut(s)	799, 1110
BspLI	GGNNCC	1 cut(s)	574
BspMAI	CTGCAG	1 cut(s)	1051
BspPI	GGATC	2 cut(s)	50, 318
BspT107I	GGYRCC	1 cut(s)	572
BssECI	CCNNGG	2 cut(s)	99, 643
BssMI	GATC	4 cut(s)	55, 228, 310, 483
BssT1I	CCWWGG	1 cut(s)	643
Bst4CI	ACNGT	4 cut(s)	369, 625, 943, 1107
BstAPI	GCANNNNNTGC	1 cut(s)	848
BstBAI	YACGTR	2 cut(s)	95, 947
BstC8I	GCNNGC	3 cut(s)	211, 473, 1170
BstDEI	CTNAG	1 cut(s)	393
BstF5I	GGATG	7 cut(s)	58, 447, 730, 760, 962, 1138, 1183
BstH2I	RGCGCY	1 cut(s)	1158
BstHHI	GCGC	2 cut(s)	1157, 1188
BstKTI	GATC	4 cut(s)	58, 231, 313, 486
BstMBI	GATC	4 cut(s)	55, 228, 310, 483
BstMWI	GCNNNNNNNGC	7 cut(s)	197, 206, 240, 461, 737, 827, 848
BstNSI	RCATGY	1 cut(s)	213
BstSCI	CCNGG	1 cut(s)	830
BstSFI	CTRYAG	1 cut(s)	1047
BstSNI	TACGTA	1 cut(s)	947
BstV1I	GCAGC	6 cut(s)	178, 273, 295, 715, 854, 1164
BstV2I	GAAGAC	1 cut(s)	450
Bsu15I	ATCGAT	1 cut(s)	227
BsuRI	GGCC	3 cut(s)	186, 830, 1034
BsuTUI	ATCGAT	1 cut(s)	227
BtgZI	GCGATG	1 cut(s)	896
BtrI	CACGTC	1 cut(s)	1183
BtsCI	GGATG	7 cut(s)	58, 447, 730, 760, 962, 1138, 1183
BtsI	GCAGTG	2 cut(s)	1044, 1149
BtsIMutI	CAGTG	2 cut(s)	1044, 1149
Cac8I	GCNNGC	3 cut(s)	211, 473, 1170
CaiI	CAGNNNCTG	1 cut(s)	289
CciI	TCATGA	2 cut(s)	799, 1110
CfoI	GCGC	2 cut(s)	1157, 1188
ClaI	ATCGAT	1 cut(s)	227
Csp6I	GTAC	5 cut(s)	265, 397, 573, 854, 944
CviAII	CATG	7 cut(s)	26, 178, 210, 452, 735, 800, 1111
CviQI	GTAC	5 cut(s)	265, 397, 573, 854, 944
DdeI	CTNAG	1 cut(s)	393
DpnI	GATC	4 cut(s)	57, 230, 312, 485
DpnII	GATC	4 cut(s)	55, 228, 310, 483
DraI	TTTAAA	1 cut(s)	861
EaeI	YGGCCR	2 cut(s)	184, 1032
Eco105I	TACGTA	1 cut(s)	947
Eco130I	CCWWGG	1 cut(s)	643
Eco57I	CTGAAG	3 cut(s)	443, 462, 795
Eco72I	CACGTG	1 cut(s)	95
Eco88I	CYCGRG	1 cut(s)	330
EcoT14I	CCWWGG	1 cut(s)	643
ErhI	CCWWGG	1 cut(s)	643
FaeI	CATG	7 cut(s)	29, 181, 213, 455, 738, 803, 1114
FaqI	GGGAC	1 cut(s)	651
FatI	CATG	7 cut(s)	25, 177, 209, 451, 734, 799, 1110
FauI	CCCGC	1 cut(s)	628
FauNDI	CATATG	1 cut(s)	116
Fnu4HI	GCNGC	6 cut(s)	192, 284, 287, 729, 843, 1153
FokI	GGATG	7 cut(s)	65, 434, 737, 747, 949, 1145, 1190
Fsp4HI	GCNGC	6 cut(s)	192, 284, 287, 729, 843, 1153
FspBI	CTAG	2 cut(s)	644, 662
FspI	TGCGCA	1 cut(s)	1187
GlaI	GCGC	2 cut(s)	1156, 1187
GluI	GCNGC	6 cut(s)	192, 284, 287, 729, 843, 1153
GsaI	CCCAGC	1 cut(s)	870
HaeII	RGCGCY	1 cut(s)	1158
HaeIII	GGCC	3 cut(s)	186, 830, 1034
HapII	CCGG	1 cut(s)	831
HhaI	GCGC	2 cut(s)	1157, 1188
Hin1II	CATG	7 cut(s)	29, 181, 213, 455, 738, 803, 1114
Hin6I	GCGC	2 cut(s)	1155, 1186
HinP1I	GCGC	2 cut(s)	1155, 1186
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HindIII	AAGCTT	2 cut(s)	469, 807
HinfI	GANTC	7 cut(s)	8, 41, 427, 562, 639, 1022, 1194
HpaII	CCGG	1 cut(s)	831
Hpy166II	GTNNAC	2 cut(s)	109, 1012
Hpy188I	TCNGA	6 cut(s)	150, 442, 495, 703, 814, 1199
Hpy188III	TCNNGA	6 cut(s)	59, 319, 332, 374, 800, 1111
Hpy8I	GTNNAC	2 cut(s)	109, 1012
HpyAV	CCTTC	1 cut(s)	1075
HpyCH4III	ACNGT	4 cut(s)	369, 625, 943, 1107
HpyCH4IV	ACGT	4 cut(s)	94, 946, 1065, 1182
HpyF10VI	GCNNNNNNNGC	7 cut(s)	197, 206, 240, 461, 737, 827, 848
HpyF3I	CTNAG	1 cut(s)	393
HpySE526I	ACGT	4 cut(s)	94, 946, 1065, 1182
Hsp92II	CATG	7 cut(s)	29, 181, 213, 455, 738, 803, 1114
HspAI	GCGC	2 cut(s)	1155, 1186
KpnI	GGTACC	1 cut(s)	576
Kzo9I	GATC	4 cut(s)	55, 228, 310, 483
Lsp1109I	GCAGC	6 cut(s)	178, 273, 295, 715, 854, 1164
LweI	GCATC	3 cut(s)	715, 971, 1123
MaeI	CTAG	2 cut(s)	644, 662
MaeII	ACGT	4 cut(s)	94, 946, 1065, 1182
MaeIII	GTNAC	3 cut(s)	157, 980, 1061
MalI	GATC	4 cut(s)	57, 230, 312, 485
MboI	GATC	4 cut(s)	55, 228, 310, 483
MboII	GAAGA	9 cut(s)	31, 418, 436, 455, 566, 592, 937, 1126, 1129
MfeI	CAATTG	1 cut(s)	35
MlsI	TGGCCA	2 cut(s)	186, 1034
MluCI	AATT	5 cut(s)	35, 523, 537, 546, 748
MluNI	TGGCCA	2 cut(s)	186, 1034
MlyI	GAGTC	2 cut(s)	17, 633
MnlI	CCTC	5 cut(s)	94, 205, 448, 901, 952
Mox20I	TGGCCA	2 cut(s)	186, 1034
MscI	TGGCCA	2 cut(s)	186, 1034
MseI	TTAA	7 cut(s)	47, 543, 860, 987, 999, 1053, 1076
Msp20I	TGGCCA	2 cut(s)	186, 1034
MspA1I	CMGCKG	2 cut(s)	286, 845
MspI	CCGG	1 cut(s)	831
MspR9I	CCNGG	1 cut(s)	832
MunI	CAATTG	1 cut(s)	35
Mva1269I	GAATGC	1 cut(s)	871
MwoI	GCNNNNNNNGC	7 cut(s)	197, 206, 240, 461, 737, 827, 848
NciI	CCSGG	1 cut(s)	832
NdeI	CATATG	1 cut(s)	116
NdeII	GATC	4 cut(s)	55, 228, 310, 483
NlaIII	CATG	7 cut(s)	29, 181, 213, 455, 738, 803, 1114
NlaIV	GGNNCC	1 cut(s)	574
NmeAIII	GCCGAG	1 cut(s)	124
NmuCI	GTSAC	2 cut(s)	157, 1061
NsbI	TGCGCA	1 cut(s)	1187
NspI	RCATGY	1 cut(s)	213
PaeI	GCATGC	1 cut(s)	213
PagI	TCATGA	2 cut(s)	799, 1110
PctI	GAATGC	1 cut(s)	871
PfeI	GAWTC	5 cut(s)	41, 427, 562, 1022, 1194
PkrI	GCNGC	6 cut(s)	193, 285, 288, 730, 844, 1154
PleI	GAGTC	2 cut(s)	16, 633
PmaCI	CACGTG	1 cut(s)	95
PmlI	CACGTG	1 cut(s)	95
PpsI	GAGTC	2 cut(s)	16, 633
Ppu21I	YACGTR	2 cut(s)	95, 947
PshBI	ATTAAT	1 cut(s)	999
PspCI	CACGTG	1 cut(s)	95
PspFI	CCCAGC	1 cut(s)	866
PspN4I	GGNNCC	1 cut(s)	574
PstI	CTGCAG	1 cut(s)	1051
PstNI	CAGNNNCTG	1 cut(s)	289
PvuII	CAGCTG	2 cut(s)	286, 845
RsaI	GTAC	5 cut(s)	266, 398, 574, 855, 945
RsaNI	GTAC	5 cut(s)	265, 397, 573, 854, 944
SaqAI	TTAA	7 cut(s)	47, 543, 860, 987, 999, 1053, 1076
SatI	GCNGC	6 cut(s)	192, 284, 287, 729, 843, 1153
Sau3AI	GATC	4 cut(s)	55, 228, 310, 483
ScaI	AGTACT	2 cut(s)	266, 398
SchI	GAGTC	2 cut(s)	17, 633
ScrFI	CCNGG	1 cut(s)	832
SfaNI	GCATC	3 cut(s)	715, 971, 1123
SfcI	CTRYAG	1 cut(s)	1047
SmlI	CTYRAG	1 cut(s)	770
SmoI	CTYRAG	1 cut(s)	770
SnaBI	TACGTA	1 cut(s)	947
SphI	GCATGC	1 cut(s)	213
Sse9I	AATT	5 cut(s)	35, 523, 537, 546, 748
SsiI	CCGC	1 cut(s)	635
SspMI	CTAG	2 cut(s)	644, 662
StyD4I	CCNGG	1 cut(s)	830
StyI	CCWWGG	1 cut(s)	643
TaaI	ACNGT	4 cut(s)	369, 625, 943, 1107
TaiI	ACGT	4 cut(s)	97, 949, 1068, 1185
TaqI	TCGA	1 cut(s)	227
TasI	AATT	5 cut(s)	35, 523, 537, 546, 748
TatI	WGTACW	2 cut(s)	264, 396
TfiI	GAWTC	5 cut(s)	41, 427, 562, 1022, 1194
Tru1I	TTAA	7 cut(s)	47, 543, 860, 987, 999, 1053, 1076
Tru9I	TTAA	7 cut(s)	47, 543, 860, 987, 999, 1053, 1076
TscAI	CASTG	2 cut(s)	1051, 1149
TseFI	GTSAC	2 cut(s)	157, 1061
TseI	GCWGC	6 cut(s)	191, 283, 286, 728, 842, 1152
Tsp45I	GTSAC	2 cut(s)	157, 1061
TspGWI	ACGGA	1 cut(s)	737
TspRI	CASTG	2 cut(s)	1051, 1149
VspI	ATTAAT	1 cut(s)	999
XapI	RAATTY	1 cut(s)	523
XceI	RCATGY	1 cut(s)	213
XcmI	CCANNNNNNNNNTGG	1 cut(s)	973
XmaJI	CCTAGG	1 cut(s)	643
XspI	CTAG	2 cut(s)	644, 662
ZrmI	AGTACT	2 cut(s)	266, 398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.