Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0007486

Physical Location & Seq

Genomic Coordinates Reverse (-)

54677477 .. 54678478

Gene Structure 1002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00205150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGAATGGCCAAGCTGCCTCTGTAATCTTGGCATGCAAACAGGATATATCGACTAGCAACAAGAGCTTTAAGCTGGTCGTCAATGAGTACTTGAACAATAGTGAGCAGCTGCTGGACTTCTGTTCTGCATTGGATAAGTTCGTGAAGTCAGCTCGGGATAGTCATTCATATACACAATATGTGGTTCAACAGTACTTTGACAACAAGATGGAAACTGAGTACTGCCTGAAGATTTTGGAGAAACTGAAGAATCTCAAGTCCTCTGATGACATCCATGCTCATTCTGCTGAGAGCTTGCACCAAAAGATCAAAGGTTTGATTGCGCAGTTTGAAAAAATATGCAAGAATTTGGAGCAGGAAATTGTTAAGATTGATGAGGAGAAGAATCGTGTTGGTACTCAGAAGAAACGCACAAGTCTTGTATATAAGAGTGTTTCTGCGATTGGTCTGGTTTTTGCAGGACTTATAGGTGCGGATTTCTTACCAGATTTAGTAGACATTGTTTCTAGTATTGGAGATGTTTCTGATGTTGCAGATACTGCTTCTAATACAGCGCATGCTGCTACTCAACCACATATTGAGTCAATACAAGCAGCATCCTTAGAAAGTATTAATAATCATGAGACTGCTTCAAAGTATGCTGTCAAGGCCGGGTTTACAGCAGTTGCTGCAGTACCTTTAAACTTAGGGCATTCATTAGTGATGTCTCATTATGATAATAAACAAAAGGTTTTGGACAAGAAGAAGAAGGACATGGACGCAATACGTAGAGAAAGTGAGTCATCCATTACGGAGTTGGGCAACATTAAGTTTCGCATTAATCAGGTGGTAAACGAGATTGATTCACTACTGGCCAAAACCAACACTGCAGTTAAAATGGGTGACATAGATTTCTTAATGAAGGATATGAAGCAAAAGCTGGAGATGTTCATGAAGAAAAGTGACAATTTGGATGCAGAAGCAGTGAAATGCAGCGTTGAAACATTGAAGGCAAGGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

333

Amino Acids

36.94

Weight (kDa)

6.76

Isoelectric Point (pI)

32.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF677	PF05055	1 - 155	4.6e-15	Protein of unknown function (DUF677)
DUF677	PF05055	215 - 332	5e-10	Protein of unknown function (DUF677)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007486)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08070 FvH4_2g08070
rosa_chinensis	RchiOBHm_Chr0c38g0503091 RchiOBHm_Chr6g0262571
rosa_laevigata	RLG00000014396 RLG00000014398 RLG00000014409 RLG00000014416
rosa_multiflora	Rmu_sc0000596.1_g000026 Rmu_sc0000596.1_g000060 Rmu_sc0003237.1_g000020 Rmu_sc0007280.1_g000009
rosa_roxburghii	Rroxscaffold_7G00205010 Rroxscaffold_7G00205150
rosa_rugosa	Rorug06G0000300
rosa_samantha	Rh6AG119600 Rh6AG120800 Rh6BG113900 Rh6BG117300 Rh6CG112100 Rh6CG115700 Rh6DG101700 Rh6DG104100
rosa_wichuraiana	Rw6G010370 Rw6G010740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	324
AccI	GTMKAC	1 cut(s)	495
AciI	CCGC	1 cut(s)	473
AcoI	YGGCCR	2 cut(s)	7, 852
AcsI	RAATTY	1 cut(s)	346
AcuI	CTGAAG	2 cut(s)	248, 266
AfaI	GTAC	5 cut(s)	89, 194, 221, 397, 675
AgsI	TTSAA	6 cut(s)	94, 188, 332, 633, 980, 988
AluBI	AGCT	7 cut(s)	14, 66, 73, 109, 152, 294, 919
AluI	AGCT	7 cut(s)	14, 66, 73, 109, 152, 294, 919
Alw26I	GTCTC	2 cut(s)	617, 711
AlwNI	CAGNNNCTG	3 cut(s)	112, 539, 668
Ama87I	CYCGRG	1 cut(s)	153
AoxI	GGCC	3 cut(s)	7, 648, 852
ApeKI	GCWGC	7 cut(s)	14, 106, 109, 560, 593, 668, 972
ApoI	RAATTY	1 cut(s)	346
AseI	ATTAAT	2 cut(s)	612, 819
AspLEI	GCGC	2 cut(s)	325, 556
AsuC2I	CCSGG	1 cut(s)	652
AsuHPI	GGTGA	1 cut(s)	893
AvaI	CYCGRG	1 cut(s)	153
BalI	TGGCCA	2 cut(s)	9, 854
BbvI	GCAGC	6 cut(s)	96, 118, 547, 605, 655, 984
BccI	CCATC	1 cut(s)	202
BcnI	CCSGG	1 cut(s)	652
BcoDI	GTCTC	2 cut(s)	617, 711
BfaI	CTAG	2 cut(s)	54, 507
BfmI	CTRYAG	2 cut(s)	669, 867
BisI	GCNGC	7 cut(s)	15, 107, 110, 561, 594, 669, 973
BlsI	GCNGC	7 cut(s)	16, 108, 111, 562, 595, 670, 974
BmcAI	AGTACT	3 cut(s)	89, 194, 221
Bme1390I	CCNGG	1 cut(s)	652
BmeT110I	CYCGRG	1 cut(s)	153
BmrFI	CCNGG	1 cut(s)	652
BmsI	GCATC	2 cut(s)	605, 943
BpmI	CTGGAG	1 cut(s)	941
BpuEI	CTTGAG	1 cut(s)	239
BpuMI	CCSGG	1 cut(s)	652
BsaAI	YACGTR	1 cut(s)	767
Bse1I	ACTGG	1 cut(s)	855
BseGI	GGATG	4 cut(s)	270, 596, 782, 958
BseMII	CTCAG	3 cut(s)	207, 279, 413
BseNI	ACTGG	1 cut(s)	855
BseRI	GAGGAG	1 cut(s)	392
BseXI	GCAGC	6 cut(s)	96, 118, 547, 605, 655, 984
BshFI	GGCC	3 cut(s)	9, 650, 854
BsiHKCI	CYCGRG	1 cut(s)	153
BsiSI	CCGG	1 cut(s)	651
BsmAI	GTCTC	2 cut(s)	617, 711
BsmI	GAATGC	1 cut(s)	691
BsnI	GGCC	3 cut(s)	9, 650, 854
BsoBI	CYCGRG	1 cut(s)	153
Bsp143I	GATC	1 cut(s)	306
BspACI	CCGC	1 cut(s)	473
BspANI	GGCC	3 cut(s)	9, 650, 854
BspCNI	CTCAG	3 cut(s)	208, 280, 412
BspHI	TCATGA	2 cut(s)	619, 930
BspMAI	CTGCAG	2 cut(s)	673, 871
BsrI	ACTGG	1 cut(s)	855
BssMI	GATC	1 cut(s)	306
Bst4CI	ACNGT	1 cut(s)	192
BstAPI	GCANNNNNTGC	2 cut(s)	539, 668
BstBAI	YACGTR	1 cut(s)	767
BstC8I	GCNNGC	3 cut(s)	34, 296, 558
BstDEI	CTNAG	5 cut(s)	216, 288, 399, 601, 685
BstF5I	GGATG	4 cut(s)	270, 596, 782, 958
BstHHI	GCGC	2 cut(s)	325, 556
BstKTI	GATC	1 cut(s)	309
BstMAI	GTCTC	2 cut(s)	617, 711
BstMBI	GATC	1 cut(s)	306
BstMWI	GCNNNNNNNGC	6 cut(s)	63, 284, 539, 560, 647, 668
BstNSI	RCATGY	2 cut(s)	36, 560
BstSCI	CCNGG	1 cut(s)	650
BstSFI	CTRYAG	2 cut(s)	669, 867
BstSNI	TACGTA	1 cut(s)	767
BstV1I	GCAGC	6 cut(s)	96, 118, 547, 605, 655, 984
BsuRI	GGCC	3 cut(s)	9, 650, 854
BtsCI	GGATG	4 cut(s)	270, 596, 782, 958
BtsI	GCAGTG	2 cut(s)	864, 969
BtsIMutI	CAGTG	2 cut(s)	864, 969
Cac8I	GCNNGC	3 cut(s)	34, 296, 558
CaiI	CAGNNNCTG	3 cut(s)	112, 539, 668
CciI	TCATGA	2 cut(s)	619, 930
CfoI	GCGC	2 cut(s)	325, 556
CseI	GACGC	1 cut(s)	767
Csp6I	GTAC	5 cut(s)	88, 193, 220, 396, 674
CviAII	CATG	6 cut(s)	33, 275, 557, 620, 754, 931
CviQI	GTAC	5 cut(s)	88, 193, 220, 396, 674
DdeI	CTNAG	5 cut(s)	216, 288, 399, 601, 685
DpnI	GATC	1 cut(s)	308
DpnII	GATC	1 cut(s)	306
DraI	TTTAAA	1 cut(s)	681
EaeI	YGGCCR	2 cut(s)	7, 852
Eco105I	TACGTA	1 cut(s)	767
Eco57I	CTGAAG	2 cut(s)	248, 266
Eco88I	CYCGRG	1 cut(s)	153
FaeI	CATG	6 cut(s)	36, 278, 560, 623, 757, 934
FatI	CATG	6 cut(s)	32, 274, 556, 619, 753, 930
FblI	GTMKAC	1 cut(s)	495
Fnu4HI	GCNGC	7 cut(s)	15, 107, 110, 561, 594, 669, 973
FokI	GGATG	4 cut(s)	257, 583, 769, 965
Fsp4HI	GCNGC	7 cut(s)	15, 107, 110, 561, 594, 669, 973
FspBI	CTAG	2 cut(s)	54, 507
FspI	TGCGCA	1 cut(s)	324
GlaI	GCGC	2 cut(s)	324, 555
GluI	GCNGC	7 cut(s)	15, 107, 110, 561, 594, 669, 973
GsuI	CTGGAG	1 cut(s)	941
HaeIII	GGCC	3 cut(s)	9, 650, 854
HapII	CCGG	1 cut(s)	651
HgaI	GACGC	1 cut(s)	767
HhaI	GCGC	2 cut(s)	325, 556
Hin1II	CATG	6 cut(s)	36, 278, 560, 623, 757, 934
Hin6I	GCGC	2 cut(s)	323, 554
HinP1I	GCGC	2 cut(s)	323, 554
HinfI	GANTC	5 cut(s)	250, 385, 581, 779, 842
HpaII	CCGG	1 cut(s)	651
HphI	GGTGA	1 cut(s)	893
Hpy166II	GTNNAC	3 cut(s)	496, 657, 832
Hpy188I	TCNGA	3 cut(s)	265, 402, 526
Hpy188III	TCNNGA	4 cut(s)	142, 155, 620, 931
Hpy8I	GTNNAC	3 cut(s)	496, 657, 832
HpyAV	CCTTC	3 cut(s)	742, 895, 982
HpyCH4III	ACNGT	1 cut(s)	192
HpyCH4IV	ACGT	1 cut(s)	766
HpyF10VI	GCNNNNNNNGC	6 cut(s)	63, 284, 539, 560, 647, 668
HpyF3I	CTNAG	5 cut(s)	216, 288, 399, 601, 685
HpySE526I	ACGT	1 cut(s)	766
Hsp92II	CATG	6 cut(s)	36, 278, 560, 623, 757, 934
HspAI	GCGC	2 cut(s)	323, 554
Kzo9I	GATC	1 cut(s)	306
LmnI	GCTCC	1 cut(s)	352
Lsp1109I	GCAGC	6 cut(s)	96, 118, 547, 605, 655, 984
LweI	GCATC	2 cut(s)	605, 943
MaeI	CTAG	2 cut(s)	54, 507
MaeII	ACGT	1 cut(s)	766
MaeIII	GTNAC	2 cut(s)	881, 941
MalI	GATC	1 cut(s)	308
MboI	GATC	1 cut(s)	306
MboII	GAAGA	7 cut(s)	241, 259, 394, 415, 754, 757, 946
MlsI	TGGCCA	2 cut(s)	9, 854
MluCI	AATT	3 cut(s)	346, 360, 946
MluNI	TGGCCA	2 cut(s)	9, 854
MlyI	GAGTC	2 cut(s)	590, 788
MnlI	CCTC	3 cut(s)	28, 271, 370
Mox20I	TGGCCA	2 cut(s)	9, 854
MscI	TGGCCA	2 cut(s)	9, 854
MseI	TTAA	8 cut(s)	69, 366, 612, 680, 807, 819, 873, 896
Msp20I	TGGCCA	2 cut(s)	9, 854
MspA1I	CMGCKG	1 cut(s)	109
MspI	CCGG	1 cut(s)	651
MspR9I	CCNGG	1 cut(s)	652
Mva1269I	GAATGC	1 cut(s)	691
MwoI	GCNNNNNNNGC	6 cut(s)	63, 284, 539, 560, 647, 668
NciI	CCSGG	1 cut(s)	652
NdeII	GATC	1 cut(s)	306
NlaIII	CATG	6 cut(s)	36, 278, 560, 623, 757, 934
NmuCI	GTSAC	2 cut(s)	881, 941
NsbI	TGCGCA	1 cut(s)	324
NspI	RCATGY	2 cut(s)	36, 560
PaeI	GCATGC	2 cut(s)	36, 560
PagI	TCATGA	2 cut(s)	619, 930
PctI	GAATGC	1 cut(s)	691
PfeI	GAWTC	3 cut(s)	250, 385, 842
PkrI	GCNGC	7 cut(s)	16, 108, 111, 562, 595, 670, 974
PleI	GAGTC	2 cut(s)	589, 787
PpsI	GAGTC	2 cut(s)	589, 787
Ppu21I	YACGTR	1 cut(s)	767
PshBI	ATTAAT	2 cut(s)	612, 819
PstI	CTGCAG	2 cut(s)	673, 871
PstNI	CAGNNNCTG	3 cut(s)	112, 539, 668
PvuII	CAGCTG	1 cut(s)	109
RsaI	GTAC	5 cut(s)	89, 194, 221, 397, 675
RsaNI	GTAC	5 cut(s)	88, 193, 220, 396, 674
SaqAI	TTAA	8 cut(s)	69, 366, 612, 680, 807, 819, 873, 896
SatI	GCNGC	7 cut(s)	15, 107, 110, 561, 594, 669, 973
Sau3AI	GATC	1 cut(s)	306
ScaI	AGTACT	3 cut(s)	89, 194, 221
SchI	GAGTC	2 cut(s)	590, 788
ScrFI	CCNGG	1 cut(s)	652
SfaNI	GCATC	2 cut(s)	605, 943
SfcI	CTRYAG	2 cut(s)	669, 867
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
SnaBI	TACGTA	1 cut(s)	767
SphI	GCATGC	2 cut(s)	36, 560
Sse9I	AATT	3 cut(s)	346, 360, 946
SsiI	CCGC	1 cut(s)	473
SspMI	CTAG	2 cut(s)	54, 507
StyD4I	CCNGG	1 cut(s)	650
TaaI	ACNGT	1 cut(s)	192
TaiI	ACGT	1 cut(s)	769
TaqI	TCGA	1 cut(s)	50
TasI	AATT	3 cut(s)	346, 360, 946
TatI	WGTACW	3 cut(s)	87, 192, 219
TfiI	GAWTC	3 cut(s)	250, 385, 842
Tru1I	TTAA	8 cut(s)	69, 366, 612, 680, 807, 819, 873, 896
Tru9I	TTAA	8 cut(s)	69, 366, 612, 680, 807, 819, 873, 896
TscAI	CASTG	2 cut(s)	871, 969
TseFI	GTSAC	2 cut(s)	881, 941
TseI	GCWGC	7 cut(s)	14, 106, 109, 560, 593, 668, 972
Tsp45I	GTSAC	2 cut(s)	881, 941
TspDTI	ATGAA	7 cut(s)	17, 156, 684, 914, 919, 923, 947
TspGWI	ACGGA	1 cut(s)	806
TspRI	CASTG	2 cut(s)	871, 969
VspI	ATTAAT	2 cut(s)	612, 819
XapI	RAATTY	1 cut(s)	346
XceI	RCATGY	2 cut(s)	36, 560
XcmI	CCANNNNNNNNNTGG	1 cut(s)	793
XmiI	GTMKAC	1 cut(s)	495
XspI	CTAG	2 cut(s)	54, 507
ZrmI	AGTACT	3 cut(s)	89, 194, 221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.