Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000596.1

Orthogroup ID

OG0007486

Physical Location & Seq

Genomic Coordinates Forward (+)

146739 .. 147962

Gene Structure 1224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000596.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

atgggagagtcgtataagaagcgtaatgaacagttgaaatcattcaaggatgacccagttgtggaatcccttgccaacaacgtaagaatacgtgctgaggctgtcaacaacatacgtaagaaggagggtttttctatcgctttcctgaaagaagtgacggcatttgtttcctacatgaatggccaagctgcctctgtaatcttggcatgcaaacaggatatatcgactagcaacaagagctttaagctggttgtcaatgagtacttgaacaatagtgagcagctgctggacttctgttctgcattggataagttcgtgaaatcagctcgggatagtcatttatatacacaatatgtggttcaacagtacgatgacaagaagatggaaactgagtactgcctgaagattttggagaaactgaagaatctcaagtcctctgatgatatccatgctgattctgctgagagcttgcaccaaaagatcaaaggtttgattgcgcagtttgaaaaactatgcaagaatttggagcacgaaatttttaagattaatgaagagaagaatcgtgttggtactcagaagaaacacacaagtcttgcatataagagtgtttctacgattggtttggtatttgcagtatttgtaggtgcggatttcttacccgaattagcagacattgtttctggtattgcagaaattgctactgatgttgcagatgctgcttctaatacagctgatgctgcttcgggtgcagttgatgctgttactcatccacatattgagtcagtacaagcagcatccttagaatttattaataataatgagactgtttcaaagtatgctgtcagcaccgggtttacagcagttgctgcagtacctttaaacttagggcattcattagtgatgtctcactatgagaataaacaaaaggttttggacaacaagaagaaggacatggacgcaatacgtagagaaagtgagtcatccattgcggagttgggcaacattaagtttcgcataaatcaggtggtaaacgagattgattcactactggccaaaaccaacactgcagttaaaatgagtgacatagatttcttaatgaaggatatgaagcaaaagctggagatgttcatgaagaaaattgacgatttggatgcagaagcagtgaaatgcagcgctgaaacattgaaggcaagggatgacgtgcgcaacagaatcagactctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

407

Amino Acids

45.44

Weight (kDa)

6.35

Isoelectric Point (pI)

29.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007486)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08070 FvH4_2g08070
rosa_chinensis	RchiOBHm_Chr0c38g0503091 RchiOBHm_Chr6g0262571
rosa_laevigata	RLG00000014396 RLG00000014398 RLG00000014409 RLG00000014416
rosa_multiflora	Rmu_sc0000596.1_g000026 Rmu_sc0000596.1_g000060 Rmu_sc0003237.1_g000020 Rmu_sc0007280.1_g000009
rosa_roxburghii	Rroxscaffold_7G00205010 Rroxscaffold_7G00205150
rosa_rugosa	Rorug06G0000300
rosa_samantha	Rh6AG119600 Rh6AG120800 Rh6BG113900 Rh6BG117300 Rh6CG112100 Rh6CG115700 Rh6DG101700 Rh6DG104100
rosa_wichuraiana	Rw6G010370 Rw6G010740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	498, 1205
AciI	CCGC	2 cut(s)	647, 989
AcoI	YGGCCR	2 cut(s)	181, 1050
AcsI	RAATTY	3 cut(s)	520, 534, 803
AcuI	CTGAAG	2 cut(s)	422, 440
AfaI	GTAC	6 cut(s)	263, 368, 395, 571, 786, 873
AfeI	AGCGCT	1 cut(s)	1174
AfiI	CCNNNNNNNGG	1 cut(s)	61
AgsI	TTSAA	7 cut(s)	37, 46, 268, 362, 506, 831, 1186
AjiI	CACGTC	1 cut(s)	1201
AluBI	AGCT	8 cut(s)	188, 240, 247, 283, 326, 468, 731, 1117
AluI	AGCT	8 cut(s)	188, 240, 247, 283, 326, 468, 731, 1117
Alw21I	GWGCWC	1 cut(s)	531
Alw26I	GTCTC	2 cut(s)	815, 909
AlwNI	CAGNNNCTG	3 cut(s)	286, 716, 866
Ama87I	CYCGRG	1 cut(s)	327
Aor51HI	AGCGCT	1 cut(s)	1174
AoxI	GGCC	2 cut(s)	181, 1050
ApeKI	GCWGC	8 cut(s)	188, 280, 283, 716, 737, 791, 866, 1170
ApoI	RAATTY	3 cut(s)	520, 534, 803
AseI	ATTAAT	2 cut(s)	546, 810
Asp700I	GAANNNNTTC	1 cut(s)	41
AspLEI	GCGC	3 cut(s)	499, 1175, 1206
AsuC2I	CCSGG	1 cut(s)	850
AvaI	CYCGRG	1 cut(s)	327
BalI	TGGCCA	2 cut(s)	183, 1052
Bbv12I	GWGCWC	1 cut(s)	531
BbvCI	CCTCAGC	1 cut(s)	96
BbvI	GCAGC	8 cut(s)	175, 270, 292, 703, 724, 803, 853, 1182
BccI	CCATC	1 cut(s)	376
BceAI	ACGGC	1 cut(s)	174
BcgI	CGANNNNNNTGC	2 cut(s)	1133, 1167
BcnI	CCSGG	1 cut(s)	850
BcoDI	GTCTC	2 cut(s)	815, 909
BfaI	CTAG	1 cut(s)	228
BfmI	CTRYAG	2 cut(s)	867, 1065
BfoI	RGCGCY	1 cut(s)	1176
BisI	GCNGC	8 cut(s)	189, 281, 284, 717, 738, 792, 867, 1171
BlsI	GCNGC	8 cut(s)	190, 282, 285, 718, 739, 793, 868, 1172
BmcAI	AGTACT	2 cut(s)	263, 395
Bme1390I	CCNGG	1 cut(s)	850
BmeT110I	CYCGRG	1 cut(s)	327
BmgBI	CACGTC	1 cut(s)	1201
BmrFI	CCNGG	1 cut(s)	850
BmrI	ACTGGG	1 cut(s)	50
BmsI	GCATC	5 cut(s)	703, 724, 745, 803, 1141
BmuI	ACTGGG	1 cut(s)	50
BpmI	CTGGAG	1 cut(s)	1139
Bpu10I	CCTNAGC	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	413
BpuMI	CCSGG	1 cut(s)	850
BsaAI	YACGTR	3 cut(s)	92, 116, 965
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse1I	ACTGG	2 cut(s)	56, 1053
Bse3DI	GCAATG	1 cut(s)	984
BseGI	GGATG	6 cut(s)	55, 766, 794, 980, 1156, 1201
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMI	GCAATG	1 cut(s)	984
BseMII	CTCAG	4 cut(s)	87, 381, 453, 587
BseNI	ACTGG	2 cut(s)	56, 1053
BseXI	GCAGC	8 cut(s)	175, 270, 292, 703, 724, 803, 853, 1182
BsgI	GTGCAG	1 cut(s)	768
BshFI	GGCC	2 cut(s)	183, 1052
BsiHKAI	GWGCWC	1 cut(s)	531
BsiHKCI	CYCGRG	1 cut(s)	327
BsiSI	CCGG	1 cut(s)	849
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmAI	GTCTC	2 cut(s)	815, 909
BsmI	GAATGC	1 cut(s)	889
BsnI	GGCC	2 cut(s)	183, 1052
BsoBI	CYCGRG	1 cut(s)	327
Bsp1286I	GDGCHC	1 cut(s)	531
Bsp143I	GATC	1 cut(s)	480
BspACI	CCGC	2 cut(s)	647, 989
BspANI	GGCC	2 cut(s)	183, 1052
BspCNI	CTCAG	4 cut(s)	88, 382, 454, 586
BspHI	TCATGA	1 cut(s)	1128
BspMAI	CTGCAG	2 cut(s)	871, 1069
BsrDI	GCAATG	1 cut(s)	984
BsrI	ACTGG	2 cut(s)	56, 1053
BssMI	GATC	1 cut(s)	480
Bst4CI	ACNGT	3 cut(s)	33, 366, 826
Bst6I	CTCTTC	1 cut(s)	546
BstAPI	GCANNNNNTGC	4 cut(s)	695, 716, 755, 866
BstBAI	YACGTR	3 cut(s)	92, 116, 965
BstC8I	GCNNGC	2 cut(s)	208, 470
BstDEI	CTNAG	6 cut(s)	96, 390, 462, 573, 799, 883
BstF5I	GGATG	6 cut(s)	55, 766, 794, 980, 1156, 1201
BstH2I	RGCGCY	1 cut(s)	1176
BstHHI	GCGC	3 cut(s)	499, 1175, 1206
BstKTI	GATC	1 cut(s)	483
BstMAI	GTCTC	2 cut(s)	815, 909
BstMBI	GATC	1 cut(s)	480
BstMWI	GCNNNNNNNGC	8 cut(s)	237, 458, 695, 716, 737, 746, 755, 866
BstNSI	RCATGY	1 cut(s)	210
BstSCI	CCNGG	1 cut(s)	848
BstSFI	CTRYAG	2 cut(s)	867, 1065
BstSNI	TACGTA	2 cut(s)	116, 965
BstV1I	GCAGC	8 cut(s)	175, 270, 292, 703, 724, 803, 853, 1182
BsuRI	GGCC	2 cut(s)	183, 1052
BtrI	CACGTC	1 cut(s)	1201
BtsCI	GGATG	6 cut(s)	55, 766, 794, 980, 1156, 1201
BtsI	GCAGTG	2 cut(s)	1062, 1167
BtsIMutI	CAGTG	2 cut(s)	1062, 1167
Cac8I	GCNNGC	2 cut(s)	208, 470
CaiI	CAGNNNCTG	3 cut(s)	286, 716, 866
CciI	TCATGA	1 cut(s)	1128
CfoI	GCGC	3 cut(s)	499, 1175, 1206
CseI	GACGC	1 cut(s)	965
Csp6I	GTAC	6 cut(s)	262, 367, 394, 570, 785, 872
CviAII	CATG	5 cut(s)	175, 207, 449, 952, 1129
CviQI	GTAC	6 cut(s)	262, 367, 394, 570, 785, 872
DdeI	CTNAG	6 cut(s)	96, 390, 462, 573, 799, 883
DpnI	GATC	1 cut(s)	482
DpnII	GATC	1 cut(s)	480
DraI	TTTAAA	1 cut(s)	879
EaeI	YGGCCR	2 cut(s)	181, 1050
Eam1104I	CTCTTC	1 cut(s)	546
EarI	CTCTTC	1 cut(s)	546
Eco105I	TACGTA	2 cut(s)	116, 965
Eco32I	GATATC	1 cut(s)	445
Eco47III	AGCGCT	1 cut(s)	1174
Eco57I	CTGAAG	2 cut(s)	422, 440
Eco88I	CYCGRG	1 cut(s)	327
EcoRV	GATATC	1 cut(s)	445
FaeI	CATG	5 cut(s)	178, 210, 452, 955, 1132
FatI	CATG	5 cut(s)	174, 206, 448, 951, 1128
Fnu4HI	GCNGC	8 cut(s)	189, 281, 284, 717, 738, 792, 867, 1171
FokI	GGATG	6 cut(s)	62, 753, 781, 967, 1163, 1208
Fsp4HI	GCNGC	8 cut(s)	189, 281, 284, 717, 738, 792, 867, 1171
FspBI	CTAG	1 cut(s)	228
FspI	TGCGCA	2 cut(s)	498, 1205
GlaI	GCGC	3 cut(s)	498, 1174, 1205
GluI	GCNGC	8 cut(s)	189, 281, 284, 717, 738, 792, 867, 1171
GsuI	CTGGAG	1 cut(s)	1139
HaeII	RGCGCY	1 cut(s)	1176
HaeIII	GGCC	2 cut(s)	183, 1052
HapII	CCGG	1 cut(s)	849
HgaI	GACGC	1 cut(s)	965
HhaI	GCGC	3 cut(s)	499, 1175, 1206
Hin1II	CATG	5 cut(s)	178, 210, 452, 955, 1132
Hin6I	GCGC	3 cut(s)	497, 1173, 1204
HinP1I	GCGC	3 cut(s)	497, 1173, 1204
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HpaII	CCGG	1 cut(s)	849
Hpy166II	GTNNAC	3 cut(s)	106, 855, 1030
Hpy188I	TCNGA	3 cut(s)	439, 576, 1217
Hpy188III	TCNNGA	4 cut(s)	145, 316, 329, 1129
Hpy8I	GTNNAC	3 cut(s)	106, 855, 1030
HpyAV	CCTTC	4 cut(s)	115, 940, 1093, 1180
HpyCH4III	ACNGT	3 cut(s)	33, 366, 826
HpyCH4IV	ACGT	5 cut(s)	81, 91, 115, 964, 1200
HpyF10VI	GCNNNNNNNGC	8 cut(s)	237, 458, 695, 716, 737, 746, 755, 866
HpyF3I	CTNAG	6 cut(s)	96, 390, 462, 573, 799, 883
HpySE526I	ACGT	5 cut(s)	81, 91, 115, 964, 1200
Hsp92II	CATG	5 cut(s)	178, 210, 452, 955, 1132
HspAI	GCGC	3 cut(s)	497, 1173, 1204
Kzo9I	GATC	1 cut(s)	480
LmnI	GCTCC	1 cut(s)	526
Lsp1109I	GCAGC	8 cut(s)	175, 270, 292, 703, 724, 803, 853, 1182
LweI	GCATC	5 cut(s)	703, 724, 745, 803, 1141
MaeI	CTAG	1 cut(s)	228
MaeII	ACGT	5 cut(s)	81, 91, 115, 964, 1200
MaeIII	GTNAC	3 cut(s)	154, 760, 1079
MalI	GATC	1 cut(s)	482
MboI	GATC	1 cut(s)	480
MboII	GAAGA	8 cut(s)	391, 415, 433, 563, 568, 589, 955, 1144
MhlI	GDGCHC	1 cut(s)	531
MlsI	TGGCCA	2 cut(s)	183, 1052
MluCI	AATT	6 cut(s)	520, 534, 662, 693, 803, 1137
MluNI	TGGCCA	2 cut(s)	183, 1052
MlyI	GAGTC	4 cut(s)	17, 788, 986, 1212
MnlI	CCTC	4 cut(s)	91, 118, 202, 445
Mox20I	TGGCCA	2 cut(s)	183, 1052
MroXI	GAANNNNTTC	1 cut(s)	41
MscI	TGGCCA	2 cut(s)	183, 1052
MseI	TTAA	8 cut(s)	243, 540, 546, 810, 878, 1005, 1071, 1094
Msp20I	TGGCCA	2 cut(s)	183, 1052
MspA1I	CMGCKG	2 cut(s)	283, 731
MspI	CCGG	1 cut(s)	849
MspR9I	CCNGG	1 cut(s)	850
Mva1269I	GAATGC	1 cut(s)	889
MwoI	GCNNNNNNNGC	8 cut(s)	237, 458, 695, 716, 737, 746, 755, 866
NciI	CCSGG	1 cut(s)	850
NdeII	GATC	1 cut(s)	480
NlaIII	CATG	5 cut(s)	178, 210, 452, 955, 1132
NmuCI	GTSAC	2 cut(s)	154, 1079
NsbI	TGCGCA	2 cut(s)	498, 1205
NspI	RCATGY	1 cut(s)	210
PaeI	GCATGC	1 cut(s)	210
PagI	TCATGA	1 cut(s)	1128
PctI	GAATGC	1 cut(s)	889
PdmI	GAANNNNTTC	1 cut(s)	41
PfeI	GAWTC	6 cut(s)	65, 424, 455, 559, 1040, 1212
PkrI	GCNGC	8 cut(s)	190, 282, 285, 718, 739, 793, 868, 1172
PleI	GAGTC	4 cut(s)	16, 787, 985, 1212
PpsI	GAGTC	4 cut(s)	16, 787, 985, 1212
Ppu21I	YACGTR	3 cut(s)	92, 116, 965
PshBI	ATTAAT	2 cut(s)	546, 810
PstI	CTGCAG	2 cut(s)	871, 1069
PstNI	CAGNNNCTG	3 cut(s)	286, 716, 866
PvuII	CAGCTG	2 cut(s)	283, 731
RsaI	GTAC	6 cut(s)	263, 368, 395, 571, 786, 873
RsaNI	GTAC	6 cut(s)	262, 367, 394, 570, 785, 872
SaqAI	TTAA	8 cut(s)	243, 540, 546, 810, 878, 1005, 1071, 1094
SatI	GCNGC	8 cut(s)	189, 281, 284, 717, 738, 792, 867, 1171
Sau3AI	GATC	1 cut(s)	480
ScaI	AGTACT	2 cut(s)	263, 395
SchI	GAGTC	4 cut(s)	17, 788, 986, 1212
ScrFI	CCNGG	1 cut(s)	850
SduI	GDGCHC	1 cut(s)	531
SfaNI	GCATC	5 cut(s)	703, 724, 745, 803, 1141
SfcI	CTRYAG	2 cut(s)	867, 1065
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
SnaBI	TACGTA	2 cut(s)	116, 965
SphI	GCATGC	1 cut(s)	210
Sse9I	AATT	6 cut(s)	520, 534, 662, 693, 803, 1137
SsiI	CCGC	2 cut(s)	647, 989
SspMI	CTAG	1 cut(s)	228
StyD4I	CCNGG	1 cut(s)	848
TaaI	ACNGT	3 cut(s)	33, 366, 826
TaiI	ACGT	5 cut(s)	84, 94, 118, 967, 1203
TaqI	TCGA	1 cut(s)	224
TasI	AATT	6 cut(s)	520, 534, 662, 693, 803, 1137
TatI	WGTACW	3 cut(s)	261, 393, 784
TfiI	GAWTC	6 cut(s)	65, 424, 455, 559, 1040, 1212
Tru1I	TTAA	8 cut(s)	243, 540, 546, 810, 878, 1005, 1071, 1094
Tru9I	TTAA	8 cut(s)	243, 540, 546, 810, 878, 1005, 1071, 1094
TscAI	CASTG	2 cut(s)	1069, 1167
TseFI	GTSAC	2 cut(s)	154, 1079
TseI	GCWGC	8 cut(s)	188, 280, 283, 716, 737, 791, 866, 1170
Tsp45I	GTSAC	2 cut(s)	154, 1079
TspDTI	ATGAA	8 cut(s)	42, 191, 564, 882, 1112, 1117, 1121, 1145
TspRI	CASTG	2 cut(s)	1069, 1167
VspI	ATTAAT	2 cut(s)	546, 810
XapI	RAATTY	3 cut(s)	520, 534, 803
XceI	RCATGY	1 cut(s)	210
XcmI	CCANNNNNNNNNTGG	1 cut(s)	991
XmnI	GAANNNNTTC	1 cut(s)	41
XspI	CTAG	1 cut(s)	228
ZrmI	AGTACT	2 cut(s)	263, 395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.