Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0007486

Physical Location & Seq

Genomic Coordinates Reverse (-)

52681030 .. 52682229

Gene Structure 1200 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014398

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGGAGAGTCATATAAGAAGCATAATGAACAGTTGAAATCATTCAAGGATGACCCAGTTGTGGAATCCCTTGCCAACAACATAAGAATTCGTGCTGAGGCTGTCAACAACATTCGTAAGAAGGAGGGTTTTTCTATCGCTTTTCTGAAAGAAGTGACGGCATTTGTTTCCTACATGAATGGCCAAGCTGCCTCTGTAATCTTGGCATGCAAACAGGATATATCGACTAGCAACAAGAGCTTTAAGCTGGTCGTCAATGAGTACTTGAACAATAGTGAGCAGCTGCTGGACTTCTGTTCTGCATTGGATAAGTTTGTGAAATCAGCTCGGGATAGTCATTCATATACACAATATGTGGTTCAACAGTACTCTGACAACATGGAAACTGAGTACTGCCTGAAGATTTTGGAGAAACTGAAGAATCTCAAGTCTTCTGATGATATCCATGCTCATTCTGCTGAGAGCTTGCACCAAAAGATCAAAGGTTTGATTGCACAGTTTAAAAAACTATGCAAGAATTTGGAGCAGGAAATTTTTAAGATTGATGAAGAGAAGAATCATGTTGGTACTCAGAAGAAACGCACAAGTCTTGTATATAAGAGTGTTTCTGCGATTGGTCTGGTTTTTGCAGGACTTATAGGTGCGGATTTCTTACCAGAGTTAGCAGACATTGTTTTTGGTATTGAAGATTTTGTTTCTGATGTTGCAGATGCTGCTTCTAATACAGCGGATGCTGCTACTCATCCACATATTGAGTCAATACAAGCAGCATCCTTAGAATTTATTAATAATCATGAGACTGCTTCAGAGTATGCTGTCAAGGCCGGGTTTACAGCAGTTGCTGCAGTACCTTTAACCTTAGGGCATTCATTAGTGATGTCTCATTATGATAATAAACGAAAGGTTTTGGACAACAAGAAGAAGGACCTGAACGCAATACGTAGAGAAAGTGAGTCATCCATTACGGAGTTGGGCAACATTAAGTTTCGCATTAATCAGGTGGTAAACGAGATTGATTCACTACTGGCCAAAACCAACACTGCAGTTAAAATGAGTGACATAGATTTCTTAATGAATGATATGAAGCAAAAGCTGGAGATATTCATGAAGAAAATTGACGATTTGGATGCAGAAGTAGTGAAATGCAGCGCTGAAACATTGAAGGCAAGGGATGACGTGCGCAACAGAATCAGACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

400

Amino Acids

44.77

Weight (kDa)

6.44

Isoelectric Point (pI)

35.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF677	PF05055	41 - 209	1.6e-14	Protein of unknown function (DUF677)
DUF677	PF05055	275 - 397	2.4e-11	Protein of unknown function (DUF677)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007486)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08070 FvH4_2g08070
rosa_chinensis	RchiOBHm_Chr0c38g0503091 RchiOBHm_Chr6g0262571
rosa_laevigata	RLG00000014396 RLG00000014398 RLG00000014409 RLG00000014416
rosa_multiflora	Rmu_sc0000596.1_g000026 Rmu_sc0000596.1_g000060 Rmu_sc0003237.1_g000020 Rmu_sc0007280.1_g000009
rosa_roxburghii	Rroxscaffold_7G00205010 Rroxscaffold_7G00205150
rosa_rugosa	Rorug06G0000300
rosa_samantha	Rh6AG119600 Rh6AG120800 Rh6BG113900 Rh6BG117300 Rh6CG112100 Rh6CG115700 Rh6DG101700 Rh6DG104100
rosa_wichuraiana	Rw6G010370 Rw6G010740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1181
AciI	CCGC	2 cut(s)	644, 728
AcoI	YGGCCR	2 cut(s)	181, 1026
AcsI	RAATTY	4 cut(s)	87, 517, 531, 779
AcuI	CTGAAG	3 cut(s)	419, 437, 789
AfaI	GTAC	5 cut(s)	263, 368, 392, 568, 849
AfeI	AGCGCT	1 cut(s)	1150
AfiI	CCNNNNNNNGG	1 cut(s)	61
AgsI	TTSAA	6 cut(s)	37, 46, 268, 362, 686, 1162
AjiI	CACGTC	1 cut(s)	1177
AluBI	AGCT	7 cut(s)	188, 240, 247, 283, 326, 465, 1093
AluI	AGCT	7 cut(s)	188, 240, 247, 283, 326, 465, 1093
Alw26I	GTCTC	2 cut(s)	791, 885
AlwNI	CAGNNNCTG	3 cut(s)	286, 713, 842
Ama87I	CYCGRG	1 cut(s)	327
Aor51HI	AGCGCT	1 cut(s)	1150
AoxI	GGCC	3 cut(s)	181, 822, 1026
ApeKI	GCWGC	8 cut(s)	188, 280, 283, 713, 734, 767, 842, 1146
ApoI	RAATTY	4 cut(s)	87, 517, 531, 779
ArsI	GACNNNNNNTTYG	2 cut(s)	659, 691
AseI	ATTAAT	2 cut(s)	786, 993
Asp700I	GAANNNNTTC	1 cut(s)	41
AspLEI	GCGC	2 cut(s)	1151, 1182
AspS9I	GGNCC	1 cut(s)	925
AsuC2I	CCSGG	1 cut(s)	826
AvaI	CYCGRG	1 cut(s)	327
AvaII	GGWCC	1 cut(s)	925
AxyI	CCTNAGG	1 cut(s)	859
BalI	TGGCCA	2 cut(s)	183, 1028
BbsI	GAAGAC	1 cut(s)	423
BbvCI	CCTCAGC	1 cut(s)	96
BbvI	GCAGC	8 cut(s)	175, 270, 292, 700, 721, 779, 829, 1158
BceAI	ACGGC	1 cut(s)	174
BcgI	CGANNNNNNTGC	2 cut(s)	1109, 1143
BcnI	CCSGG	1 cut(s)	826
BcoDI	GTCTC	2 cut(s)	791, 885
BfaI	CTAG	1 cut(s)	228
BfmI	CTRYAG	2 cut(s)	843, 1041
BfoI	RGCGCY	1 cut(s)	1152
BisI	GCNGC	8 cut(s)	189, 281, 284, 714, 735, 768, 843, 1147
BlsI	GCNGC	8 cut(s)	190, 282, 285, 715, 736, 769, 844, 1148
BmcAI	AGTACT	3 cut(s)	263, 368, 392
Bme1390I	CCNGG	1 cut(s)	826
Bme18I	GGWCC	1 cut(s)	925
BmeT110I	CYCGRG	1 cut(s)	327
BmgBI	CACGTC	1 cut(s)	1177
BmgT120I	GGNCC	1 cut(s)	925
BmrFI	CCNGG	1 cut(s)	826
BmrI	ACTGGG	1 cut(s)	50
BmsI	GCATC	4 cut(s)	700, 721, 779, 1117
BmuI	ACTGGG	1 cut(s)	50
BpiI	GAAGAC	1 cut(s)	423
BpmI	CTGGAG	1 cut(s)	1115
Bpu10I	CCTNAGC	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	410
BpuMI	CCSGG	1 cut(s)	826
BsaAI	YACGTR	1 cut(s)	941
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse1I	ACTGG	2 cut(s)	56, 1029
Bse21I	CCTNAGG	1 cut(s)	859
BseGI	GGATG	7 cut(s)	55, 736, 742, 770, 956, 1132, 1177
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMII	CTCAG	4 cut(s)	87, 378, 450, 584
BseNI	ACTGG	2 cut(s)	56, 1029
BseXI	GCAGC	8 cut(s)	175, 270, 292, 700, 721, 779, 829, 1158
BshFI	GGCC	3 cut(s)	183, 824, 1028
BsiHKCI	CYCGRG	1 cut(s)	327
BsiSI	CCGG	1 cut(s)	825
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmAI	GTCTC	2 cut(s)	791, 885
BsmI	GAATGC	1 cut(s)	865
BsnI	GGCC	3 cut(s)	183, 824, 1028
BsoBI	CYCGRG	1 cut(s)	327
Bsp143I	GATC	1 cut(s)	477
BspACI	CCGC	2 cut(s)	644, 728
BspANI	GGCC	3 cut(s)	183, 824, 1028
BspCNI	CTCAG	4 cut(s)	88, 379, 451, 583
BspHI	TCATGA	2 cut(s)	793, 1104
BspMAI	CTGCAG	2 cut(s)	847, 1045
BsrI	ACTGG	2 cut(s)	56, 1029
BssMI	GATC	1 cut(s)	477
Bst4CI	ACNGT	3 cut(s)	33, 366, 498
Bst6I	CTCTTC	1 cut(s)	543
BstAPI	GCANNNNNTGC	2 cut(s)	713, 842
BstBAI	YACGTR	1 cut(s)	941
BstC8I	GCNNGC	2 cut(s)	208, 467
BstDEI	CTNAG	6 cut(s)	96, 387, 459, 570, 775, 859
BstF5I	GGATG	7 cut(s)	55, 736, 742, 770, 956, 1132, 1177
BstH2I	RGCGCY	1 cut(s)	1152
BstHHI	GCGC	2 cut(s)	1151, 1182
BstKTI	GATC	1 cut(s)	480
BstMAI	GTCTC	2 cut(s)	791, 885
BstMBI	GATC	1 cut(s)	477
BstMWI	GCNNNNNNNGC	6 cut(s)	237, 455, 713, 734, 821, 842
BstNSI	RCATGY	1 cut(s)	210
BstSCI	CCNGG	1 cut(s)	824
BstSFI	CTRYAG	2 cut(s)	843, 1041
BstSNI	TACGTA	1 cut(s)	941
BstV1I	GCAGC	8 cut(s)	175, 270, 292, 700, 721, 779, 829, 1158
BstV2I	GAAGAC	1 cut(s)	423
Bsu36I	CCTNAGG	1 cut(s)	859
BsuRI	GGCC	3 cut(s)	183, 824, 1028
BtrI	CACGTC	1 cut(s)	1177
BtsCI	GGATG	7 cut(s)	55, 736, 742, 770, 956, 1132, 1177
BtsI	GCAGTG	1 cut(s)	1038
BtsIMutI	CAGTG	1 cut(s)	1038
Cac8I	GCNNGC	2 cut(s)	208, 467
CaiI	CAGNNNCTG	3 cut(s)	286, 713, 842
CciI	TCATGA	2 cut(s)	793, 1104
CfoI	GCGC	2 cut(s)	1151, 1182
Cfr13I	GGNCC	1 cut(s)	925
Csp6I	GTAC	5 cut(s)	262, 367, 391, 567, 848
CviAII	CATG	7 cut(s)	175, 207, 379, 446, 560, 794, 1105
CviQI	GTAC	5 cut(s)	262, 367, 391, 567, 848
DdeI	CTNAG	6 cut(s)	96, 387, 459, 570, 775, 859
DpnI	GATC	1 cut(s)	479
DpnII	GATC	1 cut(s)	477
DraI	TTTAAA	1 cut(s)	502
EaeI	YGGCCR	2 cut(s)	181, 1026
Eam1104I	CTCTTC	1 cut(s)	543
EarI	CTCTTC	1 cut(s)	543
Eco105I	TACGTA	1 cut(s)	941
Eco32I	GATATC	1 cut(s)	442
Eco47I	GGWCC	1 cut(s)	925
Eco47III	AGCGCT	1 cut(s)	1150
Eco57I	CTGAAG	3 cut(s)	419, 437, 789
Eco81I	CCTNAGG	1 cut(s)	859
Eco88I	CYCGRG	1 cut(s)	327
EcoO109I	RGGNCCY	1 cut(s)	925
EcoRI	GAATTC	1 cut(s)	87
EcoRV	GATATC	1 cut(s)	442
FaeI	CATG	7 cut(s)	178, 210, 382, 449, 563, 797, 1108
FatI	CATG	7 cut(s)	174, 206, 378, 445, 559, 793, 1104
Fnu4HI	GCNGC	8 cut(s)	189, 281, 284, 714, 735, 768, 843, 1147
FokI	GGATG	7 cut(s)	62, 729, 743, 757, 943, 1139, 1184
Fsp4HI	GCNGC	8 cut(s)	189, 281, 284, 714, 735, 768, 843, 1147
FspBI	CTAG	1 cut(s)	228
FspI	TGCGCA	1 cut(s)	1181
GlaI	GCGC	2 cut(s)	1150, 1181
GluI	GCNGC	8 cut(s)	189, 281, 284, 714, 735, 768, 843, 1147
GsuI	CTGGAG	1 cut(s)	1115
HaeII	RGCGCY	1 cut(s)	1152
HaeIII	GGCC	3 cut(s)	183, 824, 1028
HapII	CCGG	1 cut(s)	825
HhaI	GCGC	2 cut(s)	1151, 1182
Hin1II	CATG	7 cut(s)	178, 210, 382, 449, 563, 797, 1108
Hin6I	GCGC	2 cut(s)	1149, 1180
HinP1I	GCGC	2 cut(s)	1149, 1180
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HinfI	GANTC	9 cut(s)	8, 65, 421, 556, 755, 953, 1016, 1188, 1194
HpaII	CCGG	1 cut(s)	825
Hpy166II	GTNNAC	3 cut(s)	106, 831, 1006
Hpy188I	TCNGA	7 cut(s)	147, 373, 436, 573, 700, 808, 1193
Hpy188III	TCNNGA	3 cut(s)	329, 794, 1105
Hpy8I	GTNNAC	3 cut(s)	106, 831, 1006
HpyAV	CCTTC	3 cut(s)	115, 916, 1156
HpyCH4III	ACNGT	3 cut(s)	33, 366, 498
HpyCH4IV	ACGT	2 cut(s)	940, 1176
HpyF10VI	GCNNNNNNNGC	6 cut(s)	237, 455, 713, 734, 821, 842
HpyF3I	CTNAG	6 cut(s)	96, 387, 459, 570, 775, 859
HpySE526I	ACGT	2 cut(s)	940, 1176
Hsp92II	CATG	7 cut(s)	178, 210, 382, 449, 563, 797, 1108
HspAI	GCGC	2 cut(s)	1149, 1180
Kzo9I	GATC	1 cut(s)	477
LmnI	GCTCC	1 cut(s)	523
Lsp1109I	GCAGC	8 cut(s)	175, 270, 292, 700, 721, 779, 829, 1158
LweI	GCATC	4 cut(s)	700, 721, 779, 1117
MaeI	CTAG	1 cut(s)	228
MaeII	ACGT	2 cut(s)	940, 1176
MaeIII	GTNAC	2 cut(s)	154, 1055
MalI	GATC	1 cut(s)	479
MboI	GATC	1 cut(s)	477
MboII	GAAGA	9 cut(s)	412, 423, 430, 560, 565, 586, 698, 931, 1120
MlsI	TGGCCA	2 cut(s)	183, 1028
MluCI	AATT	5 cut(s)	87, 517, 531, 779, 1113
MluNI	TGGCCA	2 cut(s)	183, 1028
MlyI	GAGTC	4 cut(s)	17, 764, 962, 1188
MnlI	CCTC	3 cut(s)	91, 118, 202
Mox20I	TGGCCA	2 cut(s)	183, 1028
MroXI	GAANNNNTTC	1 cut(s)	41
MscI	TGGCCA	2 cut(s)	183, 1028
MseI	TTAA	9 cut(s)	243, 501, 537, 786, 854, 981, 993, 1047, 1070
Msp20I	TGGCCA	2 cut(s)	183, 1028
MspA1I	CMGCKG	2 cut(s)	283, 728
MspI	CCGG	1 cut(s)	825
MspR9I	CCNGG	1 cut(s)	826
Mva1269I	GAATGC	1 cut(s)	865
MwoI	GCNNNNNNNGC	6 cut(s)	237, 455, 713, 734, 821, 842
NciI	CCSGG	1 cut(s)	826
NdeII	GATC	1 cut(s)	477
NlaIII	CATG	7 cut(s)	178, 210, 382, 449, 563, 797, 1108
NmuCI	GTSAC	2 cut(s)	154, 1055
NsbI	TGCGCA	1 cut(s)	1181
NspI	RCATGY	1 cut(s)	210
PaeI	GCATGC	1 cut(s)	210
PagI	TCATGA	2 cut(s)	793, 1104
PctI	GAATGC	1 cut(s)	865
PdmI	GAANNNNTTC	1 cut(s)	41
PfeI	GAWTC	5 cut(s)	65, 421, 556, 1016, 1188
PkrI	GCNGC	8 cut(s)	190, 282, 285, 715, 736, 769, 844, 1148
PleI	GAGTC	4 cut(s)	16, 763, 961, 1188
PpsI	GAGTC	4 cut(s)	16, 763, 961, 1188
Ppu21I	YACGTR	1 cut(s)	941
PpuMI	RGGWCCY	1 cut(s)	925
PshBI	ATTAAT	2 cut(s)	786, 993
Psp5II	RGGWCCY	1 cut(s)	925
PspPI	GGNCC	1 cut(s)	925
PspPPI	RGGWCCY	1 cut(s)	925
PstI	CTGCAG	2 cut(s)	847, 1045
PstNI	CAGNNNCTG	3 cut(s)	286, 713, 842
PvuII	CAGCTG	1 cut(s)	283
RsaI	GTAC	5 cut(s)	263, 368, 392, 568, 849
RsaNI	GTAC	5 cut(s)	262, 367, 391, 567, 848
SaqAI	TTAA	9 cut(s)	243, 501, 537, 786, 854, 981, 993, 1047, 1070
SatI	GCNGC	8 cut(s)	189, 281, 284, 714, 735, 768, 843, 1147
Sau3AI	GATC	1 cut(s)	477
Sau96I	GGNCC	1 cut(s)	925
ScaI	AGTACT	3 cut(s)	263, 368, 392
SchI	GAGTC	4 cut(s)	17, 764, 962, 1188
ScrFI	CCNGG	1 cut(s)	826
SfaNI	GCATC	4 cut(s)	700, 721, 779, 1117
SfcI	CTRYAG	2 cut(s)	843, 1041
SinI	GGWCC	1 cut(s)	925
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
SnaBI	TACGTA	1 cut(s)	941
SphI	GCATGC	1 cut(s)	210
Sse9I	AATT	5 cut(s)	87, 517, 531, 779, 1113
SsiI	CCGC	2 cut(s)	644, 728
SspMI	CTAG	1 cut(s)	228
StyD4I	CCNGG	1 cut(s)	824
TaaI	ACNGT	3 cut(s)	33, 366, 498
TaiI	ACGT	2 cut(s)	943, 1179
TaqI	TCGA	1 cut(s)	224
TasI	AATT	5 cut(s)	87, 517, 531, 779, 1113
TatI	WGTACW	3 cut(s)	261, 366, 390
TfiI	GAWTC	5 cut(s)	65, 421, 556, 1016, 1188
Tru1I	TTAA	9 cut(s)	243, 501, 537, 786, 854, 981, 993, 1047, 1070
Tru9I	TTAA	9 cut(s)	243, 501, 537, 786, 854, 981, 993, 1047, 1070
TscAI	CASTG	1 cut(s)	1045
TseFI	GTSAC	2 cut(s)	154, 1055
TseI	GCWGC	8 cut(s)	188, 280, 283, 713, 734, 767, 842, 1146
Tsp45I	GTSAC	2 cut(s)	154, 1055
TspDTI	ATGAA	9 cut(s)	42, 191, 330, 561, 858, 1088, 1093, 1097, 1121
TspGWI	ACGGA	1 cut(s)	980
TspRI	CASTG	1 cut(s)	1045
VpaK11BI	GGWCC	1 cut(s)	925
VspI	ATTAAT	2 cut(s)	786, 993
XapI	RAATTY	4 cut(s)	87, 517, 531, 779
XceI	RCATGY	1 cut(s)	210
XcmI	CCANNNNNNNNNTGG	1 cut(s)	967
XmnI	GAANNNNTTC	1 cut(s)	41
XspI	CTAG	1 cut(s)	228
ZrmI	AGTACT	3 cut(s)	263, 368, 392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.