Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0007486

Physical Location & Seq

Genomic Coordinates Forward (+)

12789632 .. 12790424

Gene Structure 793 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG101700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGACATCCATGCATGCTAATTCTGCTGAAAGCTTGCACCAAAAGATCAAAGGACTTGTAGGTGCGGATTTCTTACCCGATTTAGCAGACATTGTTTCCGGTATTGCAGAAATTGCTTCTGATGTTGCAGATGCTGCTTCTAATACAGCTGATGCTGCTTCATGTGCAGCTGATGCTGCTACTCATCCACATATTGAGTCAGTACAAGCAACATCCTTAGAATGTATTAATAATCATGAGACTGCTTCAAAGTATGCTGTCAGGGTCGGGTTTACAGCAGTTGCTGCAGTACCTTTAAACTTAGGGCATTCATTAGTGATGTCTCATTATGATAATAAACAAAAGGATTTGGACAACAAGAAGAAGGACACGGACGCAATACGTAGAGAAAGTGAGTCATCCATTACGGAGTTGGGCAACATTAAGTTTCGCATTAATCAGGTGGTAAACGAGATTGATTCACTACTGGCCAAAACCAACACTGCAGTTAAAATGAGTGACCTAGATTTCTTAATGAAGGATATGAAGCAAAAGCTGGAGATGTTCATGAAGAAAATTAACGATTTGGATGCAGAAGCAGTGAAATGCAGCGCTGAAACATTGAAGGCAAGGGATGACGTGCGCAACAGAATCAGACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

213

Amino Acids

23.2

Weight (kDa)

5.64

Isoelectric Point (pI)

39.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF677	PF05055	88 - 211	8.7e-12	Protein of unknown function (DUF677)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007486)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08070 FvH4_2g08070
rosa_chinensis	RchiOBHm_Chr0c38g0503091 RchiOBHm_Chr6g0262571
rosa_laevigata	RLG00000014396 RLG00000014398 RLG00000014409 RLG00000014416
rosa_multiflora	Rmu_sc0000596.1_g000026 Rmu_sc0000596.1_g000060 Rmu_sc0003237.1_g000020 Rmu_sc0007280.1_g000009
rosa_roxburghii	Rroxscaffold_7G00205010 Rroxscaffold_7G00205150
rosa_rugosa	Rorug06G0000300
rosa_samantha	Rh6AG119600 Rh6AG120800 Rh6BG113900 Rh6BG117300 Rh6CG112100 Rh6CG115700 Rh6DG101700 Rh6DG104100
rosa_wichuraiana	Rw6G010370 Rw6G010740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	623
AciI	CCGC	1 cut(s)	65
AcoI	YGGCCR	1 cut(s)	468
AfaI	GTAC	2 cut(s)	204, 291
AfeI	AGCGCT	1 cut(s)	592
AgsI	TTSAA	2 cut(s)	249, 604
AjiI	CACGTC	1 cut(s)	619
AluBI	AGCT	4 cut(s)	33, 149, 170, 535
AluI	AGCT	4 cut(s)	33, 149, 170, 535
Alw26I	GTCTC	2 cut(s)	233, 327
AlwNI	CAGNNNCTG	2 cut(s)	134, 284
Aor51HI	AGCGCT	1 cut(s)	592
AoxI	GGCC	1 cut(s)	468
ApeKI	GCWGC	6 cut(s)	134, 155, 167, 176, 284, 588
AseI	ATTAAT	2 cut(s)	228, 435
AspLEI	GCGC	2 cut(s)	593, 624
BalI	TGGCCA	1 cut(s)	470
BbvI	GCAGC	6 cut(s)	121, 142, 163, 179, 271, 600
BcgI	CGANNNNNNTGC	2 cut(s)	551, 585
BcoDI	GTCTC	2 cut(s)	233, 327
BfaI	CTAG	1 cut(s)	503
BfmI	CTRYAG	2 cut(s)	285, 483
BfoI	RGCGCY	1 cut(s)	594
BisI	GCNGC	6 cut(s)	135, 156, 168, 177, 285, 589
BlsI	GCNGC	6 cut(s)	136, 157, 169, 178, 286, 590
BmgBI	CACGTC	1 cut(s)	619
BmsI	GCATC	4 cut(s)	121, 142, 163, 559
BpmI	CTGGAG	1 cut(s)	557
BsaAI	YACGTR	1 cut(s)	383
BsaWI	WCCGGW	1 cut(s)	98
Bse1I	ACTGG	1 cut(s)	471
BseGI	GGATG	6 cut(s)	5, 184, 212, 398, 574, 619
BseNI	ACTGG	1 cut(s)	471
BseXI	GCAGC	6 cut(s)	121, 142, 163, 179, 271, 600
BsgI	GTGCAG	1 cut(s)	186
BshFI	GGCC	1 cut(s)	470
BsiSI	CCGG	1 cut(s)	99
BsmAI	GTCTC	2 cut(s)	233, 327
BsmI	GAATGC	1 cut(s)	307
BsnI	GGCC	1 cut(s)	470
Bsp143I	GATC	1 cut(s)	45
BspACI	CCGC	1 cut(s)	65
BspANI	GGCC	1 cut(s)	470
BspHI	TCATGA	2 cut(s)	235, 546
BspMAI	CTGCAG	2 cut(s)	289, 487
BsrI	ACTGG	1 cut(s)	471
BssMI	GATC	1 cut(s)	45
BstAPI	GCANNNNNTGC	4 cut(s)	113, 134, 173, 284
BstBAI	YACGTR	1 cut(s)	383
BstC8I	GCNNGC	2 cut(s)	15, 35
BstDEI	CTNAG	2 cut(s)	217, 301
BstF5I	GGATG	6 cut(s)	5, 184, 212, 398, 574, 619
BstH2I	RGCGCY	1 cut(s)	594
BstHHI	GCGC	2 cut(s)	593, 624
BstKTI	GATC	1 cut(s)	48
BstMAI	GTCTC	2 cut(s)	233, 327
BstMBI	GATC	1 cut(s)	45
BstMWI	GCNNNNNNNGC	8 cut(s)	23, 113, 134, 155, 164, 173, 176, 284
BstNSI	RCATGY	1 cut(s)	17
BstSFI	CTRYAG	2 cut(s)	285, 483
BstSNI	TACGTA	1 cut(s)	383
BstV1I	GCAGC	6 cut(s)	121, 142, 163, 179, 271, 600
BsuRI	GGCC	1 cut(s)	470
BtrI	CACGTC	1 cut(s)	619
BtsCI	GGATG	6 cut(s)	5, 184, 212, 398, 574, 619
BtsI	GCAGTG	2 cut(s)	480, 585
BtsIMutI	CAGTG	2 cut(s)	480, 585
Cac8I	GCNNGC	2 cut(s)	15, 35
CaiI	CAGNNNCTG	2 cut(s)	134, 284
CciI	TCATGA	2 cut(s)	235, 546
CfoI	GCGC	2 cut(s)	593, 624
CseI	GACGC	1 cut(s)	383
Csp6I	GTAC	2 cut(s)	203, 290
CviAII	CATG	5 cut(s)	10, 14, 162, 236, 547
CviJI	RGCY	5 cut(s)	33, 149, 170, 470, 535
CviKI_1	RGCY	5 cut(s)	33, 149, 170, 470, 535
CviQI	GTAC	2 cut(s)	203, 290
DdeI	CTNAG	2 cut(s)	217, 301
DpnI	GATC	1 cut(s)	47
DpnII	GATC	1 cut(s)	45
DraI	TTTAAA	1 cut(s)	297
EaeI	YGGCCR	1 cut(s)	468
Eco105I	TACGTA	1 cut(s)	383
Eco47III	AGCGCT	1 cut(s)	592
EcoT22I	ATGCAT	1 cut(s)	15
FaeI	CATG	5 cut(s)	13, 17, 165, 239, 550
FaiI	YATR	9 cut(s)	11, 15, 163, 192, 237, 255, 330, 524, 548
FatI	CATG	5 cut(s)	9, 13, 161, 235, 546
Fnu4HI	GCNGC	6 cut(s)	135, 156, 168, 177, 285, 589
FokI	GGATG	5 cut(s)	171, 199, 385, 581, 626
Fsp4HI	GCNGC	6 cut(s)	135, 156, 168, 177, 285, 589
FspBI	CTAG	1 cut(s)	503
FspI	TGCGCA	1 cut(s)	623
GlaI	GCGC	2 cut(s)	592, 623
GluI	GCNGC	6 cut(s)	135, 156, 168, 177, 285, 589
GsuI	CTGGAG	1 cut(s)	557
HaeII	RGCGCY	1 cut(s)	594
HaeIII	GGCC	1 cut(s)	470
HapII	CCGG	1 cut(s)	99
HgaI	GACGC	1 cut(s)	383
HhaI	GCGC	2 cut(s)	593, 624
Hin1II	CATG	5 cut(s)	13, 17, 165, 239, 550
Hin6I	GCGC	2 cut(s)	591, 622
HinP1I	GCGC	2 cut(s)	591, 622
HindIII	AAGCTT	1 cut(s)	31
HinfI	GANTC	5 cut(s)	197, 395, 458, 630, 636
HpaII	CCGG	1 cut(s)	99
Hpy166II	GTNNAC	2 cut(s)	273, 448
Hpy188I	TCNGA	2 cut(s)	121, 635
Hpy188III	TCNNGA	2 cut(s)	236, 547
Hpy8I	GTNNAC	2 cut(s)	273, 448
HpyAV	CCTTC	3 cut(s)	358, 511, 598
HpyCH4IV	ACGT	2 cut(s)	382, 618
HpyCH4V	TGCA	9 cut(s)	13, 37, 107, 128, 167, 287, 485, 572, 588
HpyF10VI	GCNNNNNNNGC	8 cut(s)	23, 113, 134, 155, 164, 173, 176, 284
HpyF3I	CTNAG	2 cut(s)	217, 301
HpySE526I	ACGT	2 cut(s)	382, 618
Hsp92II	CATG	5 cut(s)	13, 17, 165, 239, 550
HspAI	GCGC	2 cut(s)	591, 622
Kzo9I	GATC	1 cut(s)	45
LpnPI	CCDG	5 cut(s)	112, 247, 425, 452, 521
Lsp1109I	GCAGC	6 cut(s)	121, 142, 163, 179, 271, 600
LweI	GCATC	4 cut(s)	121, 142, 163, 559
MaeI	CTAG	1 cut(s)	503
MaeII	ACGT	2 cut(s)	382, 618
MaeIII	GTNAC	1 cut(s)	497
MalI	GATC	1 cut(s)	47
MboI	GATC	1 cut(s)	45
MboII	GAAGA	2 cut(s)	373, 562
MlsI	TGGCCA	1 cut(s)	470
MluCI	AATT	3 cut(s)	19, 111, 555
MluNI	TGGCCA	1 cut(s)	470
MlyI	GAGTC	3 cut(s)	206, 404, 630
Mox20I	TGGCCA	1 cut(s)	470
Mph1103I	ATGCAT	1 cut(s)	15
MscI	TGGCCA	1 cut(s)	470
MseI	TTAA	7 cut(s)	228, 296, 423, 435, 489, 512, 558
Msp20I	TGGCCA	1 cut(s)	470
MspA1I	CMGCKG	2 cut(s)	149, 170
MspI	CCGG	1 cut(s)	99
Mva1269I	GAATGC	1 cut(s)	307
MwoI	GCNNNNNNNGC	8 cut(s)	23, 113, 134, 155, 164, 173, 176, 284
NdeII	GATC	1 cut(s)	45
NlaIII	CATG	5 cut(s)	13, 17, 165, 239, 550
NmuCI	GTSAC	1 cut(s)	497
NsbI	TGCGCA	1 cut(s)	623
NsiI	ATGCAT	1 cut(s)	15
NspI	RCATGY	1 cut(s)	17
PaeI	GCATGC	1 cut(s)	17
PagI	TCATGA	2 cut(s)	235, 546
PctI	GAATGC	1 cut(s)	307
PfeI	GAWTC	2 cut(s)	458, 630
PkrI	GCNGC	6 cut(s)	136, 157, 169, 178, 286, 590
PleI	GAGTC	3 cut(s)	205, 403, 630
PpsI	GAGTC	3 cut(s)	205, 403, 630
Ppu21I	YACGTR	1 cut(s)	383
PshBI	ATTAAT	2 cut(s)	228, 435
PstI	CTGCAG	2 cut(s)	289, 487
PstNI	CAGNNNCTG	2 cut(s)	134, 284
PvuII	CAGCTG	2 cut(s)	149, 170
RsaI	GTAC	2 cut(s)	204, 291
RsaNI	GTAC	2 cut(s)	203, 290
SaqAI	TTAA	7 cut(s)	228, 296, 423, 435, 489, 512, 558
SatI	GCNGC	6 cut(s)	135, 156, 168, 177, 285, 589
Sau3AI	GATC	1 cut(s)	45
SchI	GAGTC	3 cut(s)	206, 404, 630
SfaNI	GCATC	4 cut(s)	121, 142, 163, 559
SfcI	CTRYAG	2 cut(s)	285, 483
SnaBI	TACGTA	1 cut(s)	383
SphI	GCATGC	1 cut(s)	17
Sse9I	AATT	3 cut(s)	19, 111, 555
SsiI	CCGC	1 cut(s)	65
SspMI	CTAG	1 cut(s)	503
TaiI	ACGT	2 cut(s)	385, 621
TasI	AATT	3 cut(s)	19, 111, 555
TatI	WGTACW	1 cut(s)	202
TfiI	GAWTC	2 cut(s)	458, 630
Tru1I	TTAA	7 cut(s)	228, 296, 423, 435, 489, 512, 558
Tru9I	TTAA	7 cut(s)	228, 296, 423, 435, 489, 512, 558
TscAI	CASTG	2 cut(s)	487, 585
TseFI	GTSAC	1 cut(s)	497
TseI	GCWGC	6 cut(s)	134, 155, 167, 176, 284, 588
Tsp45I	GTSAC	1 cut(s)	497
TspDTI	ATGAA	6 cut(s)	150, 300, 530, 535, 539, 563
TspGWI	ACGGA	2 cut(s)	386, 422
TspRI	CASTG	2 cut(s)	487, 585
VspI	ATTAAT	2 cut(s)	228, 435
XceI	RCATGY	1 cut(s)	17
XcmI	CCANNNNNNNNNTGG	1 cut(s)	409
XspI	CTAG	1 cut(s)	503
Zsp2I	ATGCAT	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.