Rh6AG120800

UPF0496 protein At4g34320-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0007486
Physical Location & Seq
Forward (+)
18077531 .. 18077854
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG120800.1

Sequence Viewer

Length: 324 bp
ATGTCTCATTATGATAACAAACAAAAGGTTTTGGACAACAAGAAGAAGGACATGGACGCAATACGTACAGAAAGTGAGTCATCCATTACGGAGTTGGGCAACATTAAGTTTCACATTAATCACGTGGTAAACGAGATTGATTCACTACTGGCCAAAACCAACACTGCAGTTAAAATGAGTGACATAGATTTCTTAATGAAGGATATGAAGCAAAAGCTGGAGATGTTCAAGAAGAAAATTGACGATTTGGATGCAGAAGCAGTGAAATGCAGCGCTGAAACATTGAAGGCAAGGGATGACGTGCGCAACAGAATCAGACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF677

Protein Analysis

107

Amino Acids

12.4

Weight (kDa)

7.83

Isoelectric Point (pI)

50.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF677 PF05055 4 - 105 5.9e-10 Protein of unknown function (DUF677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 305
AcoI YGGCCR 1 cut(s) 150
AcvI CACGTG 1 cut(s) 124
AfaI GTAC 1 cut(s) 67
AfeI AGCGCT 1 cut(s) 274
AgsI TTSAA 2 cut(s) 229, 286
AjiI CACGTC 1 cut(s) 301
AluBI AGCT 1 cut(s) 217
AluI AGCT 1 cut(s) 217
Alw26I GTCTC 1 cut(s) 9
Aor51HI AGCGCT 1 cut(s) 274
AoxI GGCC 1 cut(s) 150
ApeKI GCWGC 1 cut(s) 270
AseI ATTAAT 1 cut(s) 117
AspLEI GCGC 2 cut(s) 275, 306
BalI TGGCCA 1 cut(s) 152
BbrPI CACGTG 1 cut(s) 124
BbvI GCAGC 1 cut(s) 282
BcgI CGANNNNNNTGC 2 cut(s) 233, 267
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 1 cut(s) 322
BfmI CTRYAG 1 cut(s) 165
BfoI RGCGCY 1 cut(s) 276
BisI GCNGC 1 cut(s) 271
BlsI GCNGC 1 cut(s) 272
BmgBI CACGTC 1 cut(s) 301
BmsI GCATC 1 cut(s) 241
BpmI CTGGAG 1 cut(s) 239
BsaAI YACGTR 2 cut(s) 65, 124
Bse1I ACTGG 1 cut(s) 153
BseGI GGATG 3 cut(s) 80, 256, 301
BseNI ACTGG 1 cut(s) 153
BseXI GCAGC 1 cut(s) 282
BshFI GGCC 1 cut(s) 152
BsmAI GTCTC 1 cut(s) 9
BsnI GGCC 1 cut(s) 152
BspANI GGCC 1 cut(s) 152
BspMAI CTGCAG 1 cut(s) 169
BsrI ACTGG 1 cut(s) 153
BstBAI YACGTR 2 cut(s) 65, 124
BstF5I GGATG 3 cut(s) 80, 256, 301
BstH2I RGCGCY 1 cut(s) 276
BstHHI GCGC 2 cut(s) 275, 306
BstMAI GTCTC 1 cut(s) 9
BstSFI CTRYAG 1 cut(s) 165
BstSNI TACGTA 1 cut(s) 65
BstV1I GCAGC 1 cut(s) 282
BsuRI GGCC 1 cut(s) 152
BtrI CACGTC 1 cut(s) 301
BtsCI GGATG 3 cut(s) 80, 256, 301
BtsI GCAGTG 2 cut(s) 162, 267
BtsIMutI CAGTG 2 cut(s) 162, 267
CfoI GCGC 2 cut(s) 275, 306
CseI GACGC 1 cut(s) 65
Csp6I GTAC 1 cut(s) 66
CviAII CATG 1 cut(s) 52
CviJI RGCY 2 cut(s) 152, 217
CviKI_1 RGCY 2 cut(s) 152, 217
CviQI GTAC 1 cut(s) 66
EaeI YGGCCR 1 cut(s) 150
Eco105I TACGTA 1 cut(s) 65
Eco47III AGCGCT 1 cut(s) 274
Eco72I CACGTG 1 cut(s) 124
FaeI CATG 1 cut(s) 55
FaiI YATR 4 cut(s) 12, 53, 185, 206
FatI CATG 1 cut(s) 51
Fnu4HI GCNGC 1 cut(s) 271
FokI GGATG 3 cut(s) 67, 263, 308
Fsp4HI GCNGC 1 cut(s) 271
FspBI CTAG 1 cut(s) 322
FspI TGCGCA 1 cut(s) 305
GlaI GCGC 2 cut(s) 274, 305
GluI GCNGC 1 cut(s) 271
GsuI CTGGAG 1 cut(s) 239
HaeII RGCGCY 1 cut(s) 276
HaeIII GGCC 1 cut(s) 152
HgaI GACGC 1 cut(s) 65
HhaI GCGC 2 cut(s) 275, 306
Hin1II CATG 1 cut(s) 55
Hin6I GCGC 2 cut(s) 273, 304
HinP1I GCGC 2 cut(s) 273, 304
HinfI GANTC 4 cut(s) 77, 140, 312, 318
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 1 cut(s) 317
Hpy188III TCNNGA 1 cut(s) 229
Hpy8I GTNNAC 1 cut(s) 130
HpyAV CCTTC 3 cut(s) 40, 193, 280
HpyCH4IV ACGT 3 cut(s) 64, 123, 300
HpyCH4V TGCA 3 cut(s) 167, 254, 270
HpySE526I ACGT 3 cut(s) 64, 123, 300
Hsp92II CATG 1 cut(s) 55
HspAI GCGC 2 cut(s) 273, 304
LpnPI CCDG 2 cut(s) 134, 203
Lsp1109I GCAGC 1 cut(s) 282
LweI GCATC 1 cut(s) 241
MaeI CTAG 1 cut(s) 322
MaeII ACGT 3 cut(s) 64, 123, 300
MaeIII GTNAC 1 cut(s) 179
MboII GAAGA 2 cut(s) 55, 244
MlsI TGGCCA 1 cut(s) 152
MluCI AATT 1 cut(s) 237
MluNI TGGCCA 1 cut(s) 152
MlyI GAGTC 2 cut(s) 86, 312
Mox20I TGGCCA 1 cut(s) 152
MscI TGGCCA 1 cut(s) 152
MseI TTAA 4 cut(s) 105, 117, 171, 194
Msp20I TGGCCA 1 cut(s) 152
NlaIII CATG 1 cut(s) 55
NmuCI GTSAC 1 cut(s) 179
NsbI TGCGCA 1 cut(s) 305
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PfeI GAWTC 2 cut(s) 140, 312
PkrI GCNGC 1 cut(s) 272
PleI GAGTC 2 cut(s) 85, 312
PmaCI CACGTG 1 cut(s) 124
PmlI CACGTG 1 cut(s) 124
PpsI GAGTC 2 cut(s) 85, 312
Ppu21I YACGTR 2 cut(s) 65, 124
PshBI ATTAAT 1 cut(s) 117
PspCI CACGTG 1 cut(s) 124
PstI CTGCAG 1 cut(s) 169
RsaI GTAC 1 cut(s) 67
RsaNI GTAC 1 cut(s) 66
SaqAI TTAA 4 cut(s) 105, 117, 171, 194
SatI GCNGC 1 cut(s) 271
SchI GAGTC 2 cut(s) 86, 312
SetI ASST 5 cut(s) 30, 67, 126, 219, 303
SfaNI GCATC 1 cut(s) 241
SfcI CTRYAG 1 cut(s) 165
SnaBI TACGTA 1 cut(s) 65
Sse9I AATT 1 cut(s) 237
SspMI CTAG 1 cut(s) 322
TaiI ACGT 3 cut(s) 67, 126, 303
TasI AATT 1 cut(s) 237
TfiI GAWTC 2 cut(s) 140, 312
Tru1I TTAA 4 cut(s) 105, 117, 171, 194
Tru9I TTAA 4 cut(s) 105, 117, 171, 194
TscAI CASTG 2 cut(s) 169, 267
TseFI GTSAC 1 cut(s) 179
TseI GCWGC 1 cut(s) 270
Tsp45I GTSAC 1 cut(s) 179
TspDTI ATGAA 2 cut(s) 212, 221
TspGWI ACGGA 1 cut(s) 104
TspRI CASTG 2 cut(s) 169, 267
VspI ATTAAT 1 cut(s) 117
XcmI CCANNNNNNNNNTGG 1 cut(s) 91
XspI CTAG 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.