Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007280.1

Orthogroup ID

OG0007486

Physical Location & Seq

Genomic Coordinates Forward (+)

38148 .. 39347

Gene Structure 1200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007280.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

atgggagagtcatataagaagcataatgaacagttgaaatcattcaaggatgacccagtcgtggaatcccttgccaacaacataagaatacgtgctgaggctgtcaacaacatacgtaagaaggagggtttttctatcgcttttctgaaagaagtgacggcatttgtttcctacatgaatggccaagctgcctctgtaatcttggcatgcaaacaagatatatcgactagcaacaagagctttaagctggtcgtcaatgagtacttgaacaatagtgagcagctgctggacttctgttctgcattggataagttcgtgaagtcagctcgggatagtcattcatatacacaatatgtggttcaacagtactttgacaacaagatggaaactgagtactgcctgaagattttggagaaactgaagaatcttaagtcctctgatgacatccatgctcattctgctgagagcttgcaccaaaagatcaaaggtttgatggcgcagtttgaaaaaatatgtaagaatttggagcaggaaattgttaagattgatgtagagaagaatcgtgttggtactcagaagaaacgcacaagtcttgtatataagagtgtttctgcgattggtctggtttttgcaggacttataggtgcggatttcttaccagatttagtagacattgtttctggtatgggagatgtttctgatgttgcagatactgcttctaatacagcggatgctgctactcaaccacatattgagtcaatacaagcagcatccttagagagtattaataatcatgagactgcttcaaagtatgctgtcaaggccgggtttacagcagttgctgcagtacctttaaacttagggcattcattagtgatgtctcattatgataataaacaaaaggttttggacaagaagaagaaggacatagacgcaatacgtagagaaagtgagtcatccattacggagttgggcaacattaagtttcgcattaatcaggtggtaaacgagattgattcactactggccaaaaccaacactgcagttaaaatgggtgacatagatttcttaatgaaggatatgaagcaaaagctggagatgttcatgaagaaaattgacaatttggatgcagaagcagtgaaatgcagcgctgaaacattgaaggcaagggatgacgtgcgcaacagaatcagactctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

399

Amino Acids

44.6

Weight (kDa)

8.07

Isoelectric Point (pI)

32.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007486)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08070 FvH4_2g08070
rosa_chinensis	RchiOBHm_Chr0c38g0503091 RchiOBHm_Chr6g0262571
rosa_laevigata	RLG00000014396 RLG00000014398 RLG00000014409 RLG00000014416
rosa_multiflora	Rmu_sc0000596.1_g000026 Rmu_sc0000596.1_g000060 Rmu_sc0003237.1_g000020 Rmu_sc0007280.1_g000009
rosa_roxburghii	Rroxscaffold_7G00205010 Rroxscaffold_7G00205150
rosa_rugosa	Rorug06G0000300
rosa_samantha	Rh6AG119600 Rh6AG120800 Rh6BG113900 Rh6BG117300 Rh6CG112100 Rh6CG115700 Rh6DG101700 Rh6DG104100
rosa_wichuraiana	Rw6G010370 Rw6G010740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1181
AccI	GTMKAC	1 cut(s)	669
AciI	CCGC	2 cut(s)	647, 728
AcoI	YGGCCR	2 cut(s)	181, 1026
AcsI	RAATTY	1 cut(s)	520
AcuI	CTGAAG	2 cut(s)	422, 440
AfaI	GTAC	5 cut(s)	263, 368, 395, 571, 849
AfeI	AGCGCT	1 cut(s)	1150
AfiI	CCNNNNNNNGG	1 cut(s)	61
AflII	CTTAAG	1 cut(s)	428
AgsI	TTSAA	7 cut(s)	37, 46, 268, 362, 506, 807, 1162
AjiI	CACGTC	1 cut(s)	1177
AluBI	AGCT	7 cut(s)	188, 240, 247, 283, 326, 468, 1093
AluI	AGCT	7 cut(s)	188, 240, 247, 283, 326, 468, 1093
Alw26I	GTCTC	2 cut(s)	791, 885
AlwNI	CAGNNNCTG	3 cut(s)	286, 713, 842
Ama87I	CYCGRG	1 cut(s)	327
Aor51HI	AGCGCT	1 cut(s)	1150
AoxI	GGCC	3 cut(s)	181, 822, 1026
ApeKI	GCWGC	7 cut(s)	188, 280, 283, 734, 767, 842, 1146
ApoI	RAATTY	1 cut(s)	520
AseI	ATTAAT	2 cut(s)	786, 993
Asp700I	GAANNNNTTC	1 cut(s)	41
AspLEI	GCGC	3 cut(s)	499, 1151, 1182
AsuC2I	CCSGG	1 cut(s)	826
AsuHPI	GGTGA	1 cut(s)	1067
AvaI	CYCGRG	1 cut(s)	327
BalI	TGGCCA	2 cut(s)	183, 1028
BbvCI	CCTCAGC	1 cut(s)	96
BbvI	GCAGC	7 cut(s)	175, 270, 292, 721, 779, 829, 1158
BccI	CCATC	2 cut(s)	376, 487
BceAI	ACGGC	1 cut(s)	174
BcnI	CCSGG	1 cut(s)	826
BcoDI	GTCTC	2 cut(s)	791, 885
BfaI	CTAG	2 cut(s)	228, 1198
BfmI	CTRYAG	2 cut(s)	843, 1041
BfoI	RGCGCY	1 cut(s)	1152
BfrI	CTTAAG	1 cut(s)	428
BisI	GCNGC	7 cut(s)	189, 281, 284, 735, 768, 843, 1147
BlsI	GCNGC	7 cut(s)	190, 282, 285, 736, 769, 844, 1148
BmcAI	AGTACT	3 cut(s)	263, 368, 395
Bme1390I	CCNGG	1 cut(s)	826
BmeT110I	CYCGRG	1 cut(s)	327
BmgBI	CACGTC	1 cut(s)	1177
BmrFI	CCNGG	1 cut(s)	826
BmrI	ACTGGG	1 cut(s)	50
BmsI	GCATC	3 cut(s)	721, 779, 1117
BmuI	ACTGGG	1 cut(s)	50
BpmI	CTGGAG	1 cut(s)	1115
Bpu10I	CCTNAGC	1 cut(s)	96
BpuMI	CCSGG	1 cut(s)	826
BsaAI	YACGTR	3 cut(s)	92, 116, 941
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse1I	ACTGG	2 cut(s)	56, 1029
BseGI	GGATG	7 cut(s)	55, 444, 736, 770, 956, 1132, 1177
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMII	CTCAG	4 cut(s)	87, 381, 453, 587
BseNI	ACTGG	2 cut(s)	56, 1029
BseXI	GCAGC	7 cut(s)	175, 270, 292, 721, 779, 829, 1158
BshFI	GGCC	3 cut(s)	183, 824, 1028
BsiHKCI	CYCGRG	1 cut(s)	327
BsiSI	CCGG	1 cut(s)	825
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmAI	GTCTC	2 cut(s)	791, 885
BsmI	GAATGC	1 cut(s)	865
BsnI	GGCC	3 cut(s)	183, 824, 1028
BsoBI	CYCGRG	1 cut(s)	327
Bsp143I	GATC	1 cut(s)	480
BspACI	CCGC	2 cut(s)	647, 728
BspANI	GGCC	3 cut(s)	183, 824, 1028
BspCNI	CTCAG	4 cut(s)	88, 382, 454, 586
BspHI	TCATGA	2 cut(s)	793, 1104
BspMAI	CTGCAG	2 cut(s)	847, 1045
BspTI	CTTAAG	1 cut(s)	428
BsrI	ACTGG	2 cut(s)	56, 1029
BssMI	GATC	1 cut(s)	480
Bst4CI	ACNGT	2 cut(s)	33, 366
BstAFI	CTTAAG	1 cut(s)	428
BstAPI	GCANNNNNTGC	2 cut(s)	713, 842
BstBAI	YACGTR	3 cut(s)	92, 116, 941
BstC8I	GCNNGC	2 cut(s)	208, 470
BstDEI	CTNAG	6 cut(s)	96, 390, 462, 573, 775, 859
BstF5I	GGATG	7 cut(s)	55, 444, 736, 770, 956, 1132, 1177
BstH2I	RGCGCY	1 cut(s)	1152
BstHHI	GCGC	3 cut(s)	499, 1151, 1182
BstKTI	GATC	1 cut(s)	483
BstMAI	GTCTC	2 cut(s)	791, 885
BstMBI	GATC	1 cut(s)	480
BstMWI	GCNNNNNNNGC	6 cut(s)	237, 458, 713, 734, 821, 842
BstNSI	RCATGY	1 cut(s)	210
BstSCI	CCNGG	1 cut(s)	824
BstSFI	CTRYAG	2 cut(s)	843, 1041
BstSNI	TACGTA	2 cut(s)	116, 941
BstV1I	GCAGC	7 cut(s)	175, 270, 292, 721, 779, 829, 1158
BsuRI	GGCC	3 cut(s)	183, 824, 1028
BtrI	CACGTC	1 cut(s)	1177
BtsCI	GGATG	7 cut(s)	55, 444, 736, 770, 956, 1132, 1177
BtsI	GCAGTG	2 cut(s)	1038, 1143
BtsIMutI	CAGTG	2 cut(s)	1038, 1143
Cac8I	GCNNGC	2 cut(s)	208, 470
CaiI	CAGNNNCTG	3 cut(s)	286, 713, 842
CciI	TCATGA	2 cut(s)	793, 1104
CfoI	GCGC	3 cut(s)	499, 1151, 1182
CseI	GACGC	1 cut(s)	941
Csp6I	GTAC	5 cut(s)	262, 367, 394, 570, 848
CviAII	CATG	5 cut(s)	175, 207, 449, 794, 1105
CviQI	GTAC	5 cut(s)	262, 367, 394, 570, 848
DdeI	CTNAG	6 cut(s)	96, 390, 462, 573, 775, 859
DpnI	GATC	1 cut(s)	482
DpnII	GATC	1 cut(s)	480
DraI	TTTAAA	1 cut(s)	855
EaeI	YGGCCR	2 cut(s)	181, 1026
Eco105I	TACGTA	2 cut(s)	116, 941
Eco47III	AGCGCT	1 cut(s)	1150
Eco57I	CTGAAG	2 cut(s)	422, 440
Eco88I	CYCGRG	1 cut(s)	327
FaeI	CATG	5 cut(s)	178, 210, 452, 797, 1108
FatI	CATG	5 cut(s)	174, 206, 448, 793, 1104
FblI	GTMKAC	1 cut(s)	669
Fnu4HI	GCNGC	7 cut(s)	189, 281, 284, 735, 768, 843, 1147
FokI	GGATG	7 cut(s)	62, 431, 743, 757, 943, 1139, 1184
Fsp4HI	GCNGC	7 cut(s)	189, 281, 284, 735, 768, 843, 1147
FspBI	CTAG	2 cut(s)	228, 1198
FspI	TGCGCA	1 cut(s)	1181
GlaI	GCGC	3 cut(s)	498, 1150, 1181
GluI	GCNGC	7 cut(s)	189, 281, 284, 735, 768, 843, 1147
GsuI	CTGGAG	1 cut(s)	1115
HaeII	RGCGCY	1 cut(s)	1152
HaeIII	GGCC	3 cut(s)	183, 824, 1028
HapII	CCGG	1 cut(s)	825
HgaI	GACGC	1 cut(s)	941
HhaI	GCGC	3 cut(s)	499, 1151, 1182
Hin1II	CATG	5 cut(s)	178, 210, 452, 797, 1108
Hin6I	GCGC	3 cut(s)	497, 1149, 1180
HinP1I	GCGC	3 cut(s)	497, 1149, 1180
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HinfI	GANTC	9 cut(s)	8, 65, 424, 559, 755, 953, 1016, 1188, 1194
HpaII	CCGG	1 cut(s)	825
HphI	GGTGA	1 cut(s)	1067
Hpy166II	GTNNAC	4 cut(s)	106, 670, 831, 1006
Hpy188I	TCNGA	5 cut(s)	147, 439, 576, 700, 1193
Hpy188III	TCNNGA	4 cut(s)	316, 329, 794, 1105
Hpy8I	GTNNAC	4 cut(s)	106, 670, 831, 1006
HpyAV	CCTTC	4 cut(s)	115, 916, 1069, 1156
HpyCH4III	ACNGT	2 cut(s)	33, 366
HpyCH4IV	ACGT	4 cut(s)	91, 115, 940, 1176
HpyCH4V	TGCA	9 cut(s)	210, 302, 472, 632, 707, 845, 1043, 1130, 1146
HpyF10VI	GCNNNNNNNGC	6 cut(s)	237, 458, 713, 734, 821, 842
HpyF3I	CTNAG	6 cut(s)	96, 390, 462, 573, 775, 859
HpySE526I	ACGT	4 cut(s)	91, 115, 940, 1176
Hsp92II	CATG	5 cut(s)	178, 210, 452, 797, 1108
HspAI	GCGC	3 cut(s)	497, 1149, 1180
Kzo9I	GATC	1 cut(s)	480
LmnI	GCTCC	1 cut(s)	526
Lsp1109I	GCAGC	7 cut(s)	175, 270, 292, 721, 779, 829, 1158
LweI	GCATC	3 cut(s)	721, 779, 1117
MaeI	CTAG	2 cut(s)	228, 1198
MaeII	ACGT	4 cut(s)	91, 115, 940, 1176
MaeIII	GTNAC	2 cut(s)	154, 1055
MalI	GATC	1 cut(s)	482
MboI	GATC	1 cut(s)	480
MboII	GAAGA	7 cut(s)	415, 433, 568, 589, 928, 931, 1120
MlsI	TGGCCA	2 cut(s)	183, 1028
MluCI	AATT	4 cut(s)	520, 534, 1113, 1120
MluNI	TGGCCA	2 cut(s)	183, 1028
MlyI	GAGTC	4 cut(s)	17, 764, 962, 1188
MnlI	CCTC	4 cut(s)	91, 118, 202, 445
Mox20I	TGGCCA	2 cut(s)	183, 1028
MroXI	GAANNNNTTC	1 cut(s)	41
MscI	TGGCCA	2 cut(s)	183, 1028
MseI	TTAA	9 cut(s)	243, 429, 540, 786, 854, 981, 993, 1047, 1070
Msp20I	TGGCCA	2 cut(s)	183, 1028
MspA1I	CMGCKG	2 cut(s)	283, 728
MspCI	CTTAAG	1 cut(s)	428
MspI	CCGG	1 cut(s)	825
MspR9I	CCNGG	1 cut(s)	826
Mva1269I	GAATGC	1 cut(s)	865
MwoI	GCNNNNNNNGC	6 cut(s)	237, 458, 713, 734, 821, 842
NciI	CCSGG	1 cut(s)	826
NdeII	GATC	1 cut(s)	480
NlaIII	CATG	5 cut(s)	178, 210, 452, 797, 1108
NmuCI	GTSAC	2 cut(s)	154, 1055
NsbI	TGCGCA	1 cut(s)	1181
NspI	RCATGY	1 cut(s)	210
PaeI	GCATGC	1 cut(s)	210
PagI	TCATGA	2 cut(s)	793, 1104
PctI	GAATGC	1 cut(s)	865
PdmI	GAANNNNTTC	1 cut(s)	41
PfeI	GAWTC	5 cut(s)	65, 424, 559, 1016, 1188
PflFI	GACNNNGTC	1 cut(s)	56
PkrI	GCNGC	7 cut(s)	190, 282, 285, 736, 769, 844, 1148
PleI	GAGTC	4 cut(s)	16, 763, 961, 1188
PpsI	GAGTC	4 cut(s)	16, 763, 961, 1188
Ppu21I	YACGTR	3 cut(s)	92, 116, 941
PshBI	ATTAAT	2 cut(s)	786, 993
PstI	CTGCAG	2 cut(s)	847, 1045
PstNI	CAGNNNCTG	3 cut(s)	286, 713, 842
PsyI	GACNNNGTC	1 cut(s)	56
PvuII	CAGCTG	1 cut(s)	283
RsaI	GTAC	5 cut(s)	263, 368, 395, 571, 849
RsaNI	GTAC	5 cut(s)	262, 367, 394, 570, 848
SaqAI	TTAA	9 cut(s)	243, 429, 540, 786, 854, 981, 993, 1047, 1070
SatI	GCNGC	7 cut(s)	189, 281, 284, 735, 768, 843, 1147
Sau3AI	GATC	1 cut(s)	480
ScaI	AGTACT	3 cut(s)	263, 368, 395
SchI	GAGTC	4 cut(s)	17, 764, 962, 1188
ScrFI	CCNGG	1 cut(s)	826
SfaNI	GCATC	3 cut(s)	721, 779, 1117
SfcI	CTRYAG	2 cut(s)	843, 1041
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
SnaBI	TACGTA	2 cut(s)	116, 941
SphI	GCATGC	1 cut(s)	210
Sse9I	AATT	4 cut(s)	520, 534, 1113, 1120
SsiI	CCGC	2 cut(s)	647, 728
SspMI	CTAG	2 cut(s)	228, 1198
StyD4I	CCNGG	1 cut(s)	824
TaaI	ACNGT	2 cut(s)	33, 366
TaiI	ACGT	4 cut(s)	94, 118, 943, 1179
TaqI	TCGA	1 cut(s)	224
TasI	AATT	4 cut(s)	520, 534, 1113, 1120
TatI	WGTACW	3 cut(s)	261, 366, 393
TfiI	GAWTC	5 cut(s)	65, 424, 559, 1016, 1188
Tru1I	TTAA	9 cut(s)	243, 429, 540, 786, 854, 981, 993, 1047, 1070
Tru9I	TTAA	9 cut(s)	243, 429, 540, 786, 854, 981, 993, 1047, 1070
TscAI	CASTG	2 cut(s)	1045, 1143
TseFI	GTSAC	2 cut(s)	154, 1055
TseI	GCWGC	7 cut(s)	188, 280, 283, 734, 767, 842, 1146
Tsp45I	GTSAC	2 cut(s)	154, 1055
TspDTI	ATGAA	8 cut(s)	42, 191, 330, 858, 1088, 1093, 1097, 1121
TspGWI	ACGGA	1 cut(s)	980
TspRI	CASTG	2 cut(s)	1045, 1143
Tth111I	GACNNNGTC	1 cut(s)	56
Vha464I	CTTAAG	1 cut(s)	428
VspI	ATTAAT	2 cut(s)	786, 993
XapI	RAATTY	1 cut(s)	520
XceI	RCATGY	1 cut(s)	210
XcmI	CCANNNNNNNNNTGG	1 cut(s)	967
XmiI	GTMKAC	1 cut(s)	669
XmnI	GAANNNNTTC	1 cut(s)	41
XspI	CTAG	2 cut(s)	228, 1198
ZrmI	AGTACT	3 cut(s)	263, 368, 395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.