Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0007486

Physical Location & Seq

Genomic Coordinates Forward (+)

17969641 .. 17981985

Gene Structure 12345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G010370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGGGGAGTCATATAAGAAGAAGCATAATGAACAGTTGAAATCATTCAAGGATGACCCAGATGTGAAACTTGCCAACGACAAAAGAATACATGGTTTTTCTCTAGCTTTTCTGAAAGAAGTGACGGCATTTGTTTCCTACATGAATGGCCAAGCTGCCTTTGCATTCTTGACATGCGAACAAGATATATCAACTAGCAACAAGAGCTTTAAGTTGGTTGTCAATGAGTACTTGAGCAATAGTGAGCAGCTGCTGGATTTCTGTTCCGCATTGGATAAGTTCGTGAAGTTAGAAATGGAAACTGAGTACTGCGACTACTGCCTGAAGATTTTGGAGAAATTGAAGAATCTCAAGTCCTCTGATGACATCCATGCTAATTCTGCTGAAAGCTTGCACCAAAAGATCAAAGGTTTGATTACGCAGTTTGAAAAACTATGCAAGAATTTGAAGCACGAAATTTTTAAGATTAGTATAGAGAAGAATCGTGTTAGTACTCAGAAGAAACACACAAGTCTTGCACATAAGAGTGTTTCTGCGATTGGTTTGGTATTTGCAGGACTTGTAGGTGCGAATTTCTTACCCGATTTAGCAGGCATTGTTTCTGGTATTGCAGAAATTGCTTCTAATGTTGCAGATGCTGCTTCTAATACGGCTGATGCTGCTTCATCATCCGTAGAATGTATTAATAATCATGAGACTGCTTCAAAGTATACTGTCAAGGCTGCGTTTACAGCAGTTGCTGCAGTACCTTTAAACTTAGGGCATTCATTAGTGATGTCTCATTATGATAACAAACAAAAGGTTTTGGACAACAAGAAGAAGGACATGGACGCAATACGTACAGAAAGTGAGTCATCCATTACGGAGTTGGGCAACATTAAGTTTCACATTAATCACGTGGTAAACGAGATTGATTCACTACTGGCCAAAACCAACACTGCAGTTAAAATGAGTGACATAGATTTCTTAATGAAGGATATGAAGCAAAAGCTGGAGATGTTCAAGAAGAAAATTGACGATTTGGATGCAGAAGCAGTGAAATGCAGCGCTGAAACATTGAAGGCAAGGGATGACGTGCGCAACAGAATCAGACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

365

Amino Acids

40.64

Weight (kDa)

7.62

Isoelectric Point (pI)

27.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF677	PF05055	23 - 97	1.3e-06	Protein of unknown function (DUF677)
DUF677	PF05055	241 - 363	2.6e-12	Protein of unknown function (DUF677)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007486)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08070 FvH4_2g08070
rosa_chinensis	RchiOBHm_Chr0c38g0503091 RchiOBHm_Chr6g0262571
rosa_laevigata	RLG00000014396 RLG00000014398 RLG00000014409 RLG00000014416
rosa_multiflora	Rmu_sc0000596.1_g000026 Rmu_sc0000596.1_g000060 Rmu_sc0003237.1_g000020 Rmu_sc0007280.1_g000009
rosa_roxburghii	Rroxscaffold_7G00205010 Rroxscaffold_7G00205150
rosa_rugosa	Rorug06G0000300
rosa_samantha	Rh6AG119600 Rh6AG120800 Rh6BG113900 Rh6BG117300 Rh6CG112100 Rh6CG115700 Rh6DG101700 Rh6DG104100
rosa_wichuraiana	Rw6G010370 Rw6G010740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1079
AccI	GTMKAC	1 cut(s)	710
AciI	CCGC	1 cut(s)	267
AcoI	YGGCCR	2 cut(s)	148, 924
AcsI	RAATTY	3 cut(s)	442, 456, 571
AcuI	CTGAAG	1 cut(s)	344
AcvI	CACGTG	1 cut(s)	898
AfaI	GTAC	5 cut(s)	230, 308, 493, 747, 841
AfeI	AGCGCT	1 cut(s)	1048
AgsI	TTSAA	8 cut(s)	40, 49, 343, 428, 448, 705, 1003, 1060
AjiI	CACGTC	1 cut(s)	1075
AluBI	AGCT	6 cut(s)	107, 155, 207, 250, 390, 991
AluI	AGCT	6 cut(s)	107, 155, 207, 250, 390, 991
Alw26I	GTCTC	2 cut(s)	689, 783
AlwNI	CAGNNNCTG	3 cut(s)	253, 638, 740
Aor51HI	AGCGCT	1 cut(s)	1048
AoxI	GGCC	2 cut(s)	148, 924
ApeKI	GCWGC	8 cut(s)	155, 247, 250, 638, 659, 722, 740, 1044
ApoI	RAATTY	3 cut(s)	442, 456, 571
AseI	ATTAAT	2 cut(s)	684, 891
Asp700I	GAANNNNTTC	1 cut(s)	44
AspLEI	GCGC	2 cut(s)	1049, 1080
BalI	TGGCCA	2 cut(s)	150, 926
BbrPI	CACGTG	1 cut(s)	898
BbvI	GCAGC	8 cut(s)	142, 237, 259, 625, 646, 709, 727, 1056
BceAI	ACGGC	2 cut(s)	141, 666
BcgI	CGANNNNNNTGC	2 cut(s)	1007, 1041
BcoDI	GTCTC	2 cut(s)	689, 783
BfaI	CTAG	3 cut(s)	104, 195, 1096
BfmI	CTRYAG	2 cut(s)	741, 939
BfoI	RGCGCY	1 cut(s)	1050
BisI	GCNGC	8 cut(s)	156, 248, 251, 639, 660, 723, 741, 1045
BlsI	GCNGC	8 cut(s)	157, 249, 252, 640, 661, 724, 742, 1046
BmcAI	AGTACT	3 cut(s)	230, 308, 493
BmgBI	CACGTC	1 cut(s)	1075
BmsI	GCATC	3 cut(s)	625, 646, 1015
BpmI	CTGGAG	1 cut(s)	1013
BpuEI	CTTGAG	2 cut(s)	253, 335
BsaAI	YACGTR	2 cut(s)	839, 898
Bse1I	ACTGG	1 cut(s)	927
BseGI	GGATG	6 cut(s)	58, 366, 668, 854, 1030, 1075
BseMII	CTCAG	2 cut(s)	294, 509
BseNI	ACTGG	1 cut(s)	927
BseXI	GCAGC	8 cut(s)	142, 237, 259, 625, 646, 709, 727, 1056
BshFI	GGCC	2 cut(s)	150, 926
BsmAI	GTCTC	2 cut(s)	689, 783
BsmI	GAATGC	2 cut(s)	164, 763
BsnI	GGCC	2 cut(s)	150, 926
Bsp143I	GATC	1 cut(s)	402
BspACI	CCGC	1 cut(s)	267
BspANI	GGCC	2 cut(s)	150, 926
BspCNI	CTCAG	2 cut(s)	295, 508
BspHI	TCATGA	1 cut(s)	691
BspMAI	CTGCAG	2 cut(s)	745, 943
BsrI	ACTGG	1 cut(s)	927
BssMI	GATC	1 cut(s)	402
BssNAI	GTATAC	1 cut(s)	711
Bst1107I	GTATAC	1 cut(s)	711
Bst4CI	ACNGT	2 cut(s)	36, 715
BstAPI	GCANNNNNTGC	3 cut(s)	617, 638, 740
BstBAI	YACGTR	2 cut(s)	839, 898
BstC8I	GCNNGC	2 cut(s)	392, 592
BstDEI	CTNAG	3 cut(s)	303, 495, 757
BstF5I	GGATG	6 cut(s)	58, 366, 668, 854, 1030, 1075
BstH2I	RGCGCY	1 cut(s)	1050
BstHHI	GCGC	2 cut(s)	1049, 1080
BstKTI	GATC	1 cut(s)	405
BstMAI	GTCTC	2 cut(s)	689, 783
BstMBI	GATC	1 cut(s)	402
BstMWI	GCNNNNNNNGC	9 cut(s)	161, 204, 318, 380, 617, 638, 659, 731, 740
BstNSI	RCATGY	1 cut(s)	177
BstSFI	CTRYAG	2 cut(s)	741, 939
BstSNI	TACGTA	1 cut(s)	839
BstV1I	GCAGC	8 cut(s)	142, 237, 259, 625, 646, 709, 727, 1056
BstZ17I	GTATAC	1 cut(s)	711
BsuRI	GGCC	2 cut(s)	150, 926
BtrI	CACGTC	1 cut(s)	1075
BtsCI	GGATG	6 cut(s)	58, 366, 668, 854, 1030, 1075
BtsI	GCAGTG	2 cut(s)	936, 1041
BtsIMutI	CAGTG	2 cut(s)	936, 1041
Cac8I	GCNNGC	2 cut(s)	392, 592
CaiI	CAGNNNCTG	3 cut(s)	253, 638, 740
CciI	TCATGA	1 cut(s)	691
CfoI	GCGC	2 cut(s)	1049, 1080
CseI	GACGC	1 cut(s)	839
Csp6I	GTAC	5 cut(s)	229, 307, 492, 746, 840
CviAII	CATG	6 cut(s)	92, 142, 174, 371, 692, 826
CviQI	GTAC	5 cut(s)	229, 307, 492, 746, 840
DdeI	CTNAG	3 cut(s)	303, 495, 757
DpnI	GATC	1 cut(s)	404
DpnII	GATC	1 cut(s)	402
DraI	TTTAAA	1 cut(s)	753
EaeI	YGGCCR	2 cut(s)	148, 924
Eco105I	TACGTA	1 cut(s)	839
Eco47III	AGCGCT	1 cut(s)	1048
Eco57I	CTGAAG	1 cut(s)	344
Eco72I	CACGTG	1 cut(s)	898
FaeI	CATG	6 cut(s)	95, 145, 177, 374, 695, 829
FatI	CATG	6 cut(s)	91, 141, 173, 370, 691, 825
FblI	GTMKAC	1 cut(s)	710
Fnu4HI	GCNGC	8 cut(s)	156, 248, 251, 639, 660, 723, 741, 1045
FokI	GGATG	6 cut(s)	65, 353, 655, 841, 1037, 1082
Fsp4HI	GCNGC	8 cut(s)	156, 248, 251, 639, 660, 723, 741, 1045
FspBI	CTAG	3 cut(s)	104, 195, 1096
FspI	TGCGCA	1 cut(s)	1079
GlaI	GCGC	2 cut(s)	1048, 1079
GluI	GCNGC	8 cut(s)	156, 248, 251, 639, 660, 723, 741, 1045
GsuI	CTGGAG	1 cut(s)	1013
HaeII	RGCGCY	1 cut(s)	1050
HaeIII	GGCC	2 cut(s)	150, 926
HgaI	GACGC	1 cut(s)	839
HhaI	GCGC	2 cut(s)	1049, 1080
Hin1II	CATG	6 cut(s)	95, 145, 177, 374, 695, 829
Hin6I	GCGC	2 cut(s)	1047, 1078
HinP1I	GCGC	2 cut(s)	1047, 1078
HindIII	AAGCTT	1 cut(s)	388
HinfI	GANTC	7 cut(s)	8, 346, 481, 851, 914, 1086, 1092
Hpy166II	GTNNAC	3 cut(s)	711, 729, 904
Hpy188I	TCNGA	4 cut(s)	114, 361, 498, 1091
Hpy188III	TCNNGA	4 cut(s)	169, 283, 692, 1003
Hpy8I	GTNNAC	3 cut(s)	711, 729, 904
HpyAV	CCTTC	3 cut(s)	814, 967, 1054
HpyCH4III	ACNGT	2 cut(s)	36, 715
HpyCH4IV	ACGT	3 cut(s)	838, 897, 1074
HpyF10VI	GCNNNNNNNGC	9 cut(s)	161, 204, 318, 380, 617, 638, 659, 731, 740
HpyF3I	CTNAG	3 cut(s)	303, 495, 757
HpySE526I	ACGT	3 cut(s)	838, 897, 1074
Hsp92II	CATG	6 cut(s)	95, 145, 177, 374, 695, 829
HspAI	GCGC	2 cut(s)	1047, 1078
Kzo9I	GATC	1 cut(s)	402
LpnPI	CCDG	8 cut(s)	72, 239, 335, 540, 576, 588, 908, 977
Lsp1109I	GCAGC	8 cut(s)	142, 237, 259, 625, 646, 709, 727, 1056
LweI	GCATC	3 cut(s)	625, 646, 1015
MaeI	CTAG	3 cut(s)	104, 195, 1096
MaeII	ACGT	3 cut(s)	838, 897, 1074
MaeIII	GTNAC	2 cut(s)	121, 953
MalI	GATC	1 cut(s)	404
MboI	GATC	1 cut(s)	402
MboII	GAAGA	7 cut(s)	31, 337, 355, 490, 511, 829, 1018
MlsI	TGGCCA	2 cut(s)	150, 926
MluCI	AATT	7 cut(s)	338, 376, 442, 456, 571, 615, 1011
MluNI	TGGCCA	2 cut(s)	150, 926
MlyI	GAGTC	3 cut(s)	17, 860, 1086
MnlI	CCTC	1 cut(s)	367
Mox20I	TGGCCA	2 cut(s)	150, 926
MroXI	GAANNNNTTC	1 cut(s)	44
MscI	TGGCCA	2 cut(s)	150, 926
MseI	TTAA	8 cut(s)	210, 462, 684, 752, 879, 891, 945, 968
MslI	CAYNNNNRTG	1 cut(s)	525
Msp20I	TGGCCA	2 cut(s)	150, 926
MspA1I	CMGCKG	1 cut(s)	250
Mva1269I	GAATGC	2 cut(s)	164, 763
MwoI	GCNNNNNNNGC	9 cut(s)	161, 204, 318, 380, 617, 638, 659, 731, 740
NdeII	GATC	1 cut(s)	402
NlaIII	CATG	6 cut(s)	95, 145, 177, 374, 695, 829
NmuCI	GTSAC	2 cut(s)	121, 953
NsbI	TGCGCA	1 cut(s)	1079
NspI	RCATGY	1 cut(s)	177
PagI	TCATGA	1 cut(s)	691
PcsI	WCGNNNNNNNCGW	1 cut(s)	903
PctI	GAATGC	2 cut(s)	164, 763
PdmI	GAANNNNTTC	1 cut(s)	44
PfeI	GAWTC	4 cut(s)	346, 481, 914, 1086
PkrI	GCNGC	8 cut(s)	157, 249, 252, 640, 661, 724, 742, 1046
PleI	GAGTC	3 cut(s)	16, 859, 1086
PmaCI	CACGTG	1 cut(s)	898
PmlI	CACGTG	1 cut(s)	898
PpsI	GAGTC	3 cut(s)	16, 859, 1086
Ppu21I	YACGTR	2 cut(s)	839, 898
PshBI	ATTAAT	2 cut(s)	684, 891
PspCI	CACGTG	1 cut(s)	898
PstI	CTGCAG	2 cut(s)	745, 943
PstNI	CAGNNNCTG	3 cut(s)	253, 638, 740
PvuII	CAGCTG	1 cut(s)	250
RsaI	GTAC	5 cut(s)	230, 308, 493, 747, 841
RsaNI	GTAC	5 cut(s)	229, 307, 492, 746, 840
RseI	CAYNNNNRTG	1 cut(s)	525
SaqAI	TTAA	8 cut(s)	210, 462, 684, 752, 879, 891, 945, 968
SatI	GCNGC	8 cut(s)	156, 248, 251, 639, 660, 723, 741, 1045
Sau3AI	GATC	1 cut(s)	402
ScaI	AGTACT	3 cut(s)	230, 308, 493
SchI	GAGTC	3 cut(s)	17, 860, 1086
SfaNI	GCATC	3 cut(s)	625, 646, 1015
SfcI	CTRYAG	2 cut(s)	741, 939
SmiMI	CAYNNNNRTG	1 cut(s)	525
SmlI	CTYRAG	2 cut(s)	232, 350
SmoI	CTYRAG	2 cut(s)	232, 350
SnaBI	TACGTA	1 cut(s)	839
Sse9I	AATT	7 cut(s)	338, 376, 442, 456, 571, 615, 1011
SsiI	CCGC	1 cut(s)	267
SspMI	CTAG	3 cut(s)	104, 195, 1096
TaaI	ACNGT	2 cut(s)	36, 715
TaiI	ACGT	3 cut(s)	841, 900, 1077
TasI	AATT	7 cut(s)	338, 376, 442, 456, 571, 615, 1011
TatI	WGTACW	3 cut(s)	228, 306, 491
TfiI	GAWTC	4 cut(s)	346, 481, 914, 1086
Tru1I	TTAA	8 cut(s)	210, 462, 684, 752, 879, 891, 945, 968
Tru9I	TTAA	8 cut(s)	210, 462, 684, 752, 879, 891, 945, 968
TscAI	CASTG	2 cut(s)	943, 1041
TseFI	GTSAC	2 cut(s)	121, 953
TseI	GCWGC	8 cut(s)	155, 247, 250, 638, 659, 722, 740, 1044
Tsp45I	GTSAC	2 cut(s)	121, 953
TspDTI	ATGAA	6 cut(s)	45, 158, 654, 756, 986, 995
TspGWI	ACGGA	2 cut(s)	661, 878
TspRI	CASTG	2 cut(s)	943, 1041
VspI	ATTAAT	2 cut(s)	684, 891
XapI	RAATTY	3 cut(s)	442, 456, 571
XceI	RCATGY	1 cut(s)	177
XcmI	CCANNNNNNNNNTGG	1 cut(s)	865
XmiI	GTMKAC	1 cut(s)	710
XmnI	GAANNNNTTC	1 cut(s)	44
XspI	CTAG	3 cut(s)	104, 195, 1096
ZrmI	AGTACT	3 cut(s)	230, 308, 493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.