Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0007486

Physical Location & Seq

Genomic Coordinates Reverse (-)

52607702 .. 52611247

Gene Structure 3546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014396

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGTGGAGATGAAGCAGGAAGGAGAGAAGGAGGGAATGACGATAATCAAAGGAAAAGAAGCTATTGGATTAAGAATCATAAACATGTTTGTGGCGATGGAGGAGGGGAGAGAGGAGATAAGGGAAGGGAAGAAGAAGAAGAGGACACGATATGGTGCTTCAAGTCCACAATGTGAGTTTCAGACATTAATTCATCTCGTGGGGGTGGCTCTCCACCATCTGAGTTTCCTTCAATTTGAAGCCCAGACCGTCAGTTCAAGTTTTTGTGGCTCTTTGCTGCTCCGGGCATCGGCGAATCTGAAGAACATCGCCATGATTTTATCTGCGAGATTTACAAAGCATTCTGGCCACACCAGTCCGCCCATTATGCCTCCCAGACTTGTAGGTGCGGATTTCTTACTCGATTTAGCAGACATTGTTTCTGGTATTGCAAAAATTGCTTCTGATGTTGTAGATGCTGCTTCTAATACAGTTGATGCTGCTTCATGTCCAGCTGATGTTGCTACTCATCCACATATTGAGTCAGTACAAGCAGTATCCTTAGAATGTATTAATAATCATAAGACTACTTCAAAGTGTGCTATCAGGGCCGGGTTTACAGCAGTTGCTGCAATACCTTTAAACTTAGGGCATTCATTAGTGATGTCTCATTATGATAATAAACAAAAGAATTTGGACAACAAGAAGAAGGACATGGATGCAATACGTAGAGAAAGTGAGTCATCCATTACGGAGTTGGGCAACATTAAGTTTCGCATTAATCAGGTGGTAAACGAGATTGATTCACTACTGGCCAAAACCAACACCGCAGTTAAAATGACTGACATAGATTTCTTAATAAAGGATATGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005811 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006996 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0031984 GO:0034389 GO:0042175 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0071704 GO:0071840 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 ko04975 map00561 map04975

Pfam Domains

Protein Families

DAGAT

Protein Analysis

285

Amino Acids

31.09

Weight (kDa)

8.22

Isoelectric Point (pI)

42.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007486)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08070 FvH4_2g08070
rosa_chinensis	RchiOBHm_Chr0c38g0503091 RchiOBHm_Chr6g0262571
rosa_laevigata	RLG00000014396 RLG00000014398 RLG00000014409 RLG00000014416
rosa_multiflora	Rmu_sc0000596.1_g000026 Rmu_sc0000596.1_g000060 Rmu_sc0003237.1_g000020 Rmu_sc0007280.1_g000009
rosa_roxburghii	Rroxscaffold_7G00205010 Rroxscaffold_7G00205150
rosa_rugosa	Rorug06G0000300
rosa_samantha	Rh6AG119600 Rh6AG120800 Rh6BG113900 Rh6BG117300 Rh6CG112100 Rh6CG115700 Rh6DG101700 Rh6DG104100
rosa_wichuraiana	Rw6G010370 Rw6G010740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	359, 389, 807
AcoI	YGGCCR	2 cut(s)	346, 792
AcsI	RAATTY	1 cut(s)	670
AcuI	CTGAAG	1 cut(s)	320
AdeI	CACNNNGTG	1 cut(s)	173
AfaI	GTAC	1 cut(s)	528
AfiI	CCNNNNNNNGG	1 cut(s)	289
AflIII	ACRYGT	1 cut(s)	84
AgsI	TTSAA	5 cut(s)	162, 233, 239, 258, 573
AluBI	AGCT	2 cut(s)	62, 494
AluI	AGCT	2 cut(s)	62, 494
Alw26I	GTCTC	1 cut(s)	651
AlwNI	CAGNNNCTG	1 cut(s)	608
AoxI	GGCC	3 cut(s)	346, 588, 792
ApeKI	GCWGC	4 cut(s)	277, 458, 479, 608
ApoI	RAATTY	1 cut(s)	670
AseI	ATTAAT	3 cut(s)	188, 552, 759
AspS9I	GGNCC	1 cut(s)	588
AsuC2I	CCSGG	2 cut(s)	284, 592
BalI	TGGCCA	2 cut(s)	348, 794
BauI	CACGAG	1 cut(s)	197
BbvI	GCAGC	4 cut(s)	264, 445, 466, 595
BccI	CCATC	2 cut(s)	91, 225
BciVI	GTATCC	1 cut(s)	547
BcnI	CCSGG	2 cut(s)	284, 592
BcoDI	GTCTC	1 cut(s)	651
BfuI	GTATCC	1 cut(s)	547
BisI	GCNGC	4 cut(s)	278, 459, 480, 609
BlsI	GCNGC	4 cut(s)	279, 460, 481, 610
Bme1390I	CCNGG	2 cut(s)	284, 592
BmgT120I	GGNCC	1 cut(s)	588
BmrFI	CCNGG	2 cut(s)	284, 592
BmsI	GCATC	4 cut(s)	296, 445, 466, 688
BpuMI	CCSGG	2 cut(s)	284, 592
BsaAI	YACGTR	1 cut(s)	707
Bsc4I	CCNNNNNNNGG	1 cut(s)	289
Bse1I	ACTGG	2 cut(s)	354, 795
BseGI	GGATG	3 cut(s)	508, 703, 722
BseLI	CCNNNNNNNGG	1 cut(s)	289
BseMII	CTCAG	1 cut(s)	212
BseNI	ACTGG	2 cut(s)	354, 795
BseRI	GAGGAG	2 cut(s)	116, 128
BseXI	GCAGC	4 cut(s)	264, 445, 466, 595
BshFI	GGCC	3 cut(s)	348, 590, 794
BsiSI	CCGG	2 cut(s)	283, 591
BslI	CCNNNNNNNGG	1 cut(s)	289
BsmAI	GTCTC	1 cut(s)	651
BsmI	GAATGC	2 cut(s)	340, 631
BsnI	GGCC	3 cut(s)	348, 590, 794
BspACI	CCGC	3 cut(s)	359, 389, 807
BspANI	GGCC	3 cut(s)	348, 590, 794
BspCNI	CTCAG	1 cut(s)	213
BsrI	ACTGG	2 cut(s)	354, 795
BssSI	CACGAG	1 cut(s)	197
Bst2BI	CACGAG	1 cut(s)	197
Bst4CI	ACNGT	2 cut(s)	250, 472
Bst6I	CTCTTC	1 cut(s)	134
BstAPI	GCANNNNNTGC	2 cut(s)	437, 608
BstBAI	YACGTR	1 cut(s)	707
BstDEI	CTNAG	3 cut(s)	221, 541, 625
BstF5I	GGATG	3 cut(s)	508, 703, 722
BstMAI	GTCTC	1 cut(s)	651
BstMWI	GCNNNNNNNGC	5 cut(s)	367, 437, 500, 587, 608
BstNSI	RCATGY	1 cut(s)	88
BstSCI	CCNGG	2 cut(s)	282, 590
BstSNI	TACGTA	1 cut(s)	707
BstV1I	GCAGC	4 cut(s)	264, 445, 466, 595
BsuI	GTATCC	1 cut(s)	547
BsuRI	GGCC	3 cut(s)	348, 590, 794
BtgZI	GCGATG	2 cut(s)	110, 292
BtsCI	GGATG	3 cut(s)	508, 703, 722
CaiI	CAGNNNCTG	1 cut(s)	608
Cfr13I	GGNCC	1 cut(s)	588
Csp6I	GTAC	1 cut(s)	527
CviAII	CATG	4 cut(s)	85, 313, 486, 694
CviJI	RGCY	8 cut(s)	62, 209, 242, 270, 348, 494, 590, 794
CviKI_1	RGCY	8 cut(s)	62, 209, 242, 270, 348, 494, 590, 794
CviQI	GTAC	1 cut(s)	527
DdeI	CTNAG	3 cut(s)	221, 541, 625
DraI	TTTAAA	1 cut(s)	621
DraIII	CACNNNGTG	1 cut(s)	173
EaeI	YGGCCR	2 cut(s)	346, 792
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
EciI	GGCGGA	1 cut(s)	348
Eco105I	TACGTA	1 cut(s)	707
Eco57I	CTGAAG	1 cut(s)	320
FaeI	CATG	4 cut(s)	88, 316, 489, 697
FatI	CATG	4 cut(s)	84, 312, 485, 693
Fnu4HI	GCNGC	4 cut(s)	278, 459, 480, 609
FokI	GGATG	3 cut(s)	495, 709, 710
Fsp4HI	GCNGC	4 cut(s)	278, 459, 480, 609
GluI	GCNGC	4 cut(s)	278, 459, 480, 609
HaeIII	GGCC	3 cut(s)	348, 590, 794
HapII	CCGG	2 cut(s)	283, 591
Hin1II	CATG	4 cut(s)	88, 316, 489, 697
HinfI	GANTC	5 cut(s)	75, 295, 521, 719, 782
HpaII	CCGG	2 cut(s)	283, 591
Hpy166II	GTNNAC	3 cut(s)	167, 597, 772
Hpy188I	TCNGA	4 cut(s)	183, 222, 300, 445
Hpy8I	GTNNAC	3 cut(s)	167, 597, 772
HpyAV	CCTTC	5 cut(s)	14, 22, 119, 239, 682
HpyCH4III	ACNGT	2 cut(s)	250, 472
HpyCH4IV	ACGT	1 cut(s)	706
HpyCH4V	TGCA	3 cut(s)	431, 611, 701
HpyF10VI	GCNNNNNNNGC	5 cut(s)	367, 437, 500, 587, 608
HpyF3I	CTNAG	3 cut(s)	221, 541, 625
HpySE526I	ACGT	1 cut(s)	706
Hsp92II	CATG	4 cut(s)	88, 316, 489, 697
LmnI	GCTCC	1 cut(s)	285
Lsp1109I	GCAGC	4 cut(s)	264, 445, 466, 595
LweI	GCATC	4 cut(s)	296, 445, 466, 688
MaeII	ACGT	1 cut(s)	706
MboII	GAAGA	6 cut(s)	142, 145, 148, 151, 313, 697
MlsI	TGGCCA	2 cut(s)	348, 794
MluCI	AATT	4 cut(s)	189, 233, 435, 670
MluNI	TGGCCA	2 cut(s)	348, 794
MlyI	GAGTC	2 cut(s)	530, 728
MnlI	CCTC	6 cut(s)	25, 94, 97, 106, 135, 381
Mox20I	TGGCCA	2 cut(s)	348, 794
MscI	TGGCCA	2 cut(s)	348, 794
MseI	TTAA	8 cut(s)	71, 188, 552, 620, 747, 759, 813, 836
MslI	CAYNNNNRTG	3 cut(s)	83, 89, 311
Msp20I	TGGCCA	2 cut(s)	348, 794
MspA1I	CMGCKG	1 cut(s)	494
MspI	CCGG	2 cut(s)	283, 591
MspR9I	CCNGG	2 cut(s)	284, 592
Mva1269I	GAATGC	2 cut(s)	340, 631
MwoI	GCNNNNNNNGC	5 cut(s)	367, 437, 500, 587, 608
NciI	CCSGG	2 cut(s)	284, 592
NlaIII	CATG	4 cut(s)	88, 316, 489, 697
NspI	RCATGY	1 cut(s)	88
PciI	ACATGT	1 cut(s)	84
PctI	GAATGC	2 cut(s)	340, 631
PfeI	GAWTC	3 cut(s)	75, 295, 782
PkrI	GCNGC	4 cut(s)	279, 460, 481, 610
PleI	GAGTC	2 cut(s)	529, 727
PpsI	GAGTC	2 cut(s)	529, 727
Ppu21I	YACGTR	1 cut(s)	707
PscI	ACATGT	1 cut(s)	84
PshBI	ATTAAT	3 cut(s)	188, 552, 759
PspPI	GGNCC	1 cut(s)	588
PstNI	CAGNNNCTG	1 cut(s)	608
PvuII	CAGCTG	1 cut(s)	494
RsaI	GTAC	1 cut(s)	528
RsaNI	GTAC	1 cut(s)	527
RseI	CAYNNNNRTG	3 cut(s)	83, 89, 311
SaqAI	TTAA	8 cut(s)	71, 188, 552, 620, 747, 759, 813, 836
SatI	GCNGC	4 cut(s)	278, 459, 480, 609
Sau96I	GGNCC	1 cut(s)	588
SchI	GAGTC	2 cut(s)	530, 728
ScrFI	CCNGG	2 cut(s)	284, 592
SetI	ASST	6 cut(s)	64, 388, 496, 619, 709, 768
SfaNI	GCATC	4 cut(s)	296, 445, 466, 688
SmiMI	CAYNNNNRTG	3 cut(s)	83, 89, 311
SnaBI	TACGTA	1 cut(s)	707
Sse9I	AATT	4 cut(s)	189, 233, 435, 670
SsiI	CCGC	3 cut(s)	359, 389, 807
StyD4I	CCNGG	2 cut(s)	282, 590
TaaI	ACNGT	2 cut(s)	250, 472
TaiI	ACGT	1 cut(s)	709
TaqI	TCGA	1 cut(s)	402
TasI	AATT	4 cut(s)	189, 233, 435, 670
TatI	WGTACW	1 cut(s)	526
TfiI	GAWTC	3 cut(s)	75, 295, 782
Tru1I	TTAA	8 cut(s)	71, 188, 552, 620, 747, 759, 813, 836
Tru9I	TTAA	8 cut(s)	71, 188, 552, 620, 747, 759, 813, 836
TseI	GCWGC	4 cut(s)	277, 458, 479, 608
TspDTI	ATGAA	4 cut(s)	26, 182, 474, 624
TspGWI	ACGGA	1 cut(s)	746
VspI	ATTAAT	3 cut(s)	188, 552, 759
XapI	RAATTY	1 cut(s)	670
XceI	RCATGY	1 cut(s)	88
XcmI	CCANNNNNNNNNTGG	1 cut(s)	733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.