Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0007486

Physical Location & Seq

Genomic Coordinates Forward (+)

18113591 .. 18114796

Gene Structure 1206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG117300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGGAGAGTCATATAAGAAGAAGCATAATGAGCAGTTGAATTCATTCAAGGATGACCCAGCCGTGAAATCCCTTGCCGACGACATAAAAATACGTGGTGAGGCTGTCAACAACATACGTAAGAAGGAGGGTTTTTCTATCGCTTTTCTGAAAGAAGTGACGGCATTTGTTTCCTACATGAATGGCCAAGCTGCCTCTGTAATCTTGGCATGCAAACAGGATATATCGACTAGCAACAAGAGCTTTAATCTGGTCGTCAATGAGTACTTGAACAATAGTGAGCAGCTGCTGGACTTCTGTTCTGCATTGGATAAGTTCGTGAAGTCAGCTCGGAATAGTCATTCATATACACAATATGTGGTTCAACAGTACTTTGACAAAAAGATGGAAACTGAGTACTGCCAGAAGATTTTGGAGAAACTGAAGAATCTCAAGTCCTCTGATGACATCCATGCTCATTCTGCTGAGAGCTTGCACCAAAAGATCAAAGGTTTGATTTCGCAGTTTGAAAACCTGTGCAAGAATTTGGAGCAGGAAATTGCTAAGATTGTTGAAGAGAAGAATCGTGTTGGTACTCAGAAGAAACGCACAAGTCTTGTATATAAGAGTGTTTCTGCGATTGTTATGGTTGTTGCAGTACTTACAGGTTTGGATTTCTTACCAGATTTAGCAGACATTGTTTCTGGTACTGGAGATGTTGTTTCTGATGTTGCAGATGCTACTTCTAATACAGAGGATGCTGCTACTCATCCACATATTGAGTCAATACAAGCAGCATCCTTAGACAGTATTAATAATCATGAGACTGCTTCAGAGTATGCTGTCAAGGCAGGGTTTACAGCAGTTGCTGGAGTATCTTTAAACGTAGGGCATTCATTAGTGATGTCTCATTATGATAATAAACAAAAGCATTTGGACAACAAGAAGGAGGACATGGACGCAATACGTAGAGAAAGTAAGTCATCCATTACGGAGTTGGGCAACATTAAGTTTCTCATTAATCAGGTGGTAAACGAGATTGATTCACTACTGGCCGAAACCAACACTGCAGTTAAAATGAGTGACATAGATTTCTTAATGAAGGATATGAAGCAAAAGCTGGAGATGTTCATGAAGAAAATTGACGATTTGGATGCAGAAGCACAGAAATGCAGTGCTGAAACATTGAAGACAAGGGATGACGTGCGCAACAGAATCAGACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

401

Amino Acids

44.86

Weight (kDa)

6.04

Isoelectric Point (pI)

32.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF677	PF05055	44 - 214	2.1e-16	Protein of unknown function (DUF677)
DUF677	PF05055	279 - 399	1.1e-10	Protein of unknown function (DUF677)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007486)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08070 FvH4_2g08070
rosa_chinensis	RchiOBHm_Chr0c38g0503091 RchiOBHm_Chr6g0262571
rosa_laevigata	RLG00000014396 RLG00000014398 RLG00000014409 RLG00000014416
rosa_multiflora	Rmu_sc0000596.1_g000026 Rmu_sc0000596.1_g000060 Rmu_sc0003237.1_g000020 Rmu_sc0007280.1_g000009
rosa_roxburghii	Rroxscaffold_7G00205010 Rroxscaffold_7G00205150
rosa_rugosa	Rorug06G0000300
rosa_samantha	Rh6AG119600 Rh6AG120800 Rh6BG113900 Rh6BG117300 Rh6CG112100 Rh6CG115700 Rh6DG101700 Rh6DG104100
rosa_wichuraiana	Rw6G010370 Rw6G010740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1187
AcoI	YGGCCR	2 cut(s)	184, 1032
AcsI	RAATTY	2 cut(s)	40, 523
AcuI	CTGAAG	2 cut(s)	443, 795
AfaI	GTAC	6 cut(s)	266, 371, 398, 574, 639, 688
AgsI	TTSAA	7 cut(s)	40, 49, 271, 365, 509, 554, 1168
AjiI	CACGTC	1 cut(s)	1183
AluBI	AGCT	6 cut(s)	191, 243, 286, 329, 471, 1099
AluI	AGCT	6 cut(s)	191, 243, 286, 329, 471, 1099
Alw26I	GTCTC	2 cut(s)	797, 891
AlwNI	CAGNNNCTG	2 cut(s)	289, 848
AoxI	GGCC	2 cut(s)	184, 1032
ApeKI	GCWGC	5 cut(s)	191, 283, 286, 740, 773
ApoI	RAATTY	2 cut(s)	40, 523
AseI	ATTAAT	2 cut(s)	792, 999
Asp700I	GAANNNNTTC	1 cut(s)	44
AspLEI	GCGC	1 cut(s)	1188
AsuHPI	GGTGA	1 cut(s)	110
BalI	TGGCCA	1 cut(s)	186
BbsI	GAAGAC	1 cut(s)	1175
BbvI	GCAGC	5 cut(s)	178, 273, 295, 727, 785
BccI	CCATC	1 cut(s)	379
BceAI	ACGGC	2 cut(s)	47, 177
BcgI	CGANNNNNNTGC	2 cut(s)	1115, 1149
BcoDI	GTCTC	2 cut(s)	797, 891
BfaI	CTAG	2 cut(s)	231, 1204
BfmI	CTRYAG	1 cut(s)	1047
BisI	GCNGC	5 cut(s)	192, 284, 287, 741, 774
BlsI	GCNGC	5 cut(s)	193, 285, 288, 742, 775
BmcAI	AGTACT	4 cut(s)	266, 371, 398, 639
BmgBI	CACGTC	1 cut(s)	1183
BmsI	GCATC	4 cut(s)	706, 727, 785, 1123
BpiI	GAAGAC	1 cut(s)	1175
BpmI	CTGGAG	3 cut(s)	711, 870, 1121
BpuEI	CTTGAG	1 cut(s)	416
BsaAI	YACGTR	3 cut(s)	95, 119, 947
BsaXI	ACNNNNNCTCC	2 cut(s)	684, 714
Bse1I	ACTGG	2 cut(s)	694, 1035
BseGI	GGATG	8 cut(s)	58, 447, 742, 748, 776, 962, 1138, 1183
BseMII	CTCAG	3 cut(s)	384, 456, 590
BseNI	ACTGG	2 cut(s)	694, 1035
BseXI	GCAGC	5 cut(s)	178, 273, 295, 727, 785
BseYI	CCCAGC	1 cut(s)	58
BshFI	GGCC	2 cut(s)	186, 1034
BsmAI	GTCTC	2 cut(s)	797, 891
BsmI	GAATGC	1 cut(s)	871
BsnI	GGCC	2 cut(s)	186, 1034
Bsp143I	GATC	1 cut(s)	483
BspANI	GGCC	2 cut(s)	186, 1034
BspCNI	CTCAG	3 cut(s)	385, 457, 589
BspHI	TCATGA	2 cut(s)	799, 1110
BspMAI	CTGCAG	1 cut(s)	1051
BsrI	ACTGG	2 cut(s)	694, 1035
BssMI	GATC	1 cut(s)	483
Bst4CI	ACNGT	2 cut(s)	369, 788
Bst6I	CTCTTC	1 cut(s)	549
BstBAI	YACGTR	3 cut(s)	95, 119, 947
BstC8I	GCNNGC	2 cut(s)	211, 473
BstDEI	CTNAG	5 cut(s)	393, 465, 543, 576, 781
BstF5I	GGATG	8 cut(s)	58, 447, 742, 748, 776, 962, 1138, 1183
BstHHI	GCGC	1 cut(s)	1188
BstKTI	GATC	1 cut(s)	486
BstMAI	GTCTC	2 cut(s)	797, 891
BstMBI	GATC	1 cut(s)	483
BstMWI	GCNNNNNNNGC	4 cut(s)	31, 240, 461, 827
BstNSI	RCATGY	1 cut(s)	213
BstSFI	CTRYAG	1 cut(s)	1047
BstSNI	TACGTA	2 cut(s)	119, 947
BstV1I	GCAGC	5 cut(s)	178, 273, 295, 727, 785
BstV2I	GAAGAC	1 cut(s)	1175
BsuRI	GGCC	2 cut(s)	186, 1034
BtrI	CACGTC	1 cut(s)	1183
BtsCI	GGATG	8 cut(s)	58, 447, 742, 748, 776, 962, 1138, 1183
BtsI	GCAGTG	2 cut(s)	1044, 1159
BtsIMutI	CAGTG	2 cut(s)	1044, 1159
Cac8I	GCNNGC	2 cut(s)	211, 473
CaiI	CAGNNNCTG	2 cut(s)	289, 848
CciI	TCATGA	2 cut(s)	799, 1110
CfoI	GCGC	1 cut(s)	1188
CseI	GACGC	1 cut(s)	947
Csp6I	GTAC	6 cut(s)	265, 370, 397, 573, 638, 687
CviAII	CATG	6 cut(s)	178, 210, 452, 800, 934, 1111
CviQI	GTAC	6 cut(s)	265, 370, 397, 573, 638, 687
DdeI	CTNAG	5 cut(s)	393, 465, 543, 576, 781
DpnI	GATC	1 cut(s)	485
DpnII	GATC	1 cut(s)	483
DraI	TTTAAA	1 cut(s)	861
EaeI	YGGCCR	2 cut(s)	184, 1032
Eam1104I	CTCTTC	1 cut(s)	549
EarI	CTCTTC	1 cut(s)	549
Eco105I	TACGTA	2 cut(s)	119, 947
Eco57I	CTGAAG	2 cut(s)	443, 795
EcoRI	GAATTC	1 cut(s)	40
FaeI	CATG	6 cut(s)	181, 213, 455, 803, 937, 1114
FatI	CATG	6 cut(s)	177, 209, 451, 799, 933, 1110
Fnu4HI	GCNGC	5 cut(s)	192, 284, 287, 741, 774
FokI	GGATG	8 cut(s)	65, 434, 735, 749, 763, 949, 1145, 1190
Fsp4HI	GCNGC	5 cut(s)	192, 284, 287, 741, 774
FspBI	CTAG	2 cut(s)	231, 1204
FspI	TGCGCA	1 cut(s)	1187
GlaI	GCGC	1 cut(s)	1187
GluI	GCNGC	5 cut(s)	192, 284, 287, 741, 774
GsaI	CCCAGC	1 cut(s)	62
GsuI	CTGGAG	3 cut(s)	711, 870, 1121
HaeIII	GGCC	2 cut(s)	186, 1034
HgaI	GACGC	1 cut(s)	947
HhaI	GCGC	1 cut(s)	1188
Hin1II	CATG	6 cut(s)	181, 213, 455, 803, 937, 1114
Hin6I	GCGC	1 cut(s)	1186
HinP1I	GCGC	1 cut(s)	1186
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HinfI	GANTC	7 cut(s)	8, 427, 562, 761, 1022, 1194, 1200
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	3 cut(s)	109, 837, 1012
Hpy188I	TCNGA	7 cut(s)	150, 333, 442, 579, 706, 814, 1199
Hpy188III	TCNNGA	3 cut(s)	319, 800, 1111
Hpy8I	GTNNAC	3 cut(s)	109, 837, 1012
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	3 cut(s)	118, 919, 1075
HpyCH4III	ACNGT	2 cut(s)	369, 788
HpyCH4IV	ACGT	5 cut(s)	94, 118, 864, 946, 1182
HpyCH4V	TGCA	9 cut(s)	213, 305, 475, 519, 635, 713, 1049, 1136, 1152
HpyF10VI	GCNNNNNNNGC	4 cut(s)	31, 240, 461, 827
HpyF3I	CTNAG	5 cut(s)	393, 465, 543, 576, 781
HpySE526I	ACGT	5 cut(s)	94, 118, 864, 946, 1182
Hsp92II	CATG	6 cut(s)	181, 213, 455, 803, 937, 1114
HspAI	GCGC	1 cut(s)	1186
Kzo9I	GATC	1 cut(s)	483
LmnI	GCTCC	1 cut(s)	529
Lsp1109I	GCAGC	5 cut(s)	178, 273, 295, 727, 785
LweI	GCATC	4 cut(s)	706, 727, 785, 1123
MaeI	CTAG	2 cut(s)	231, 1204
MaeII	ACGT	5 cut(s)	94, 118, 864, 946, 1182
MaeIII	GTNAC	2 cut(s)	157, 1061
MalI	GATC	1 cut(s)	485
MboI	GATC	1 cut(s)	483
MboII	GAAGA	8 cut(s)	31, 418, 436, 566, 571, 592, 1126, 1180
MlsI	TGGCCA	1 cut(s)	186
MluCI	AATT	4 cut(s)	40, 523, 537, 1119
MluNI	TGGCCA	1 cut(s)	186
MlyI	GAGTC	3 cut(s)	17, 770, 1194
MnlI	CCTC	6 cut(s)	94, 121, 205, 448, 727, 922
Mox20I	TGGCCA	1 cut(s)	186
MroXI	GAANNNNTTC	1 cut(s)	44
MscI	TGGCCA	1 cut(s)	186
MseI	TTAA	7 cut(s)	246, 792, 860, 987, 999, 1053, 1076
MslI	CAYNNNNRTG	1 cut(s)	1147
Msp20I	TGGCCA	1 cut(s)	186
MspA1I	CMGCKG	1 cut(s)	286
Mva1269I	GAATGC	1 cut(s)	871
MwoI	GCNNNNNNNGC	4 cut(s)	31, 240, 461, 827
NdeII	GATC	1 cut(s)	483
NlaIII	CATG	6 cut(s)	181, 213, 455, 803, 937, 1114
NmuCI	GTSAC	2 cut(s)	157, 1061
NsbI	TGCGCA	1 cut(s)	1187
NspI	RCATGY	1 cut(s)	213
PaeI	GCATGC	1 cut(s)	213
PagI	TCATGA	2 cut(s)	799, 1110
PctI	GAATGC	1 cut(s)	871
PdmI	GAANNNNTTC	1 cut(s)	44
PfeI	GAWTC	4 cut(s)	427, 562, 1022, 1194
PkrI	GCNGC	5 cut(s)	193, 285, 288, 742, 775
PleI	GAGTC	3 cut(s)	16, 769, 1194
PpsI	GAGTC	3 cut(s)	16, 769, 1194
Ppu21I	YACGTR	3 cut(s)	95, 119, 947
PshBI	ATTAAT	2 cut(s)	792, 999
PspFI	CCCAGC	1 cut(s)	58
PstI	CTGCAG	1 cut(s)	1051
PstNI	CAGNNNCTG	2 cut(s)	289, 848
PvuII	CAGCTG	1 cut(s)	286
RsaI	GTAC	6 cut(s)	266, 371, 398, 574, 639, 688
RsaNI	GTAC	6 cut(s)	265, 370, 397, 573, 638, 687
RseI	CAYNNNNRTG	1 cut(s)	1147
SaqAI	TTAA	7 cut(s)	246, 792, 860, 987, 999, 1053, 1076
SatI	GCNGC	5 cut(s)	192, 284, 287, 741, 774
Sau3AI	GATC	1 cut(s)	483
ScaI	AGTACT	4 cut(s)	266, 371, 398, 639
SchI	GAGTC	3 cut(s)	17, 770, 1194
SfaNI	GCATC	4 cut(s)	706, 727, 785, 1123
SfcI	CTRYAG	1 cut(s)	1047
SmiMI	CAYNNNNRTG	1 cut(s)	1147
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
SnaBI	TACGTA	2 cut(s)	119, 947
SphI	GCATGC	1 cut(s)	213
Sse9I	AATT	4 cut(s)	40, 523, 537, 1119
SspMI	CTAG	2 cut(s)	231, 1204
TaaI	ACNGT	2 cut(s)	369, 788
TaiI	ACGT	5 cut(s)	97, 121, 867, 949, 1185
TaqI	TCGA	1 cut(s)	227
TasI	AATT	4 cut(s)	40, 523, 537, 1119
TatI	WGTACW	4 cut(s)	264, 369, 396, 637
TfiI	GAWTC	4 cut(s)	427, 562, 1022, 1194
Tru1I	TTAA	7 cut(s)	246, 792, 860, 987, 999, 1053, 1076
Tru9I	TTAA	7 cut(s)	246, 792, 860, 987, 999, 1053, 1076
TscAI	CASTG	2 cut(s)	1051, 1159
TseFI	GTSAC	2 cut(s)	157, 1061
TseI	GCWGC	5 cut(s)	191, 283, 286, 740, 773
Tsp45I	GTSAC	2 cut(s)	157, 1061
TspDTI	ATGAA	8 cut(s)	33, 194, 333, 864, 1094, 1099, 1103, 1127
TspGWI	ACGGA	1 cut(s)	986
TspRI	CASTG	2 cut(s)	1051, 1159
VspI	ATTAAT	2 cut(s)	792, 999
XapI	RAATTY	2 cut(s)	40, 523
XceI	RCATGY	1 cut(s)	213
XcmI	CCANNNNNNNNNTGG	1 cut(s)	973
XmnI	GAANNNNTTC	1 cut(s)	44
XspI	CTAG	2 cut(s)	231, 1204
ZrmI	AGTACT	4 cut(s)	266, 371, 398, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.