Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0007486

Physical Location & Seq

Genomic Coordinates Forward (+)

17734935 .. 17735718

Gene Structure 784 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG113900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGCATGCTAATTCTGCTGAAAGCTTGCACCAAAAGATCAAAGGACTTGTAGGTGCGGATTTCTTACCCGATTTAGCAGACATTGTTTCCGGTATTGCAGAAATTGCTTCTGATGTTGCAGATGCTGCTTCTAATACAGCTGATGCTGCTTCATGTGCAGCTGATGCTGCTACTCATCCACATATTGAGTCAGTACAAGCAACATCCTTAGAATGTATTAATAATCATGAGACTGCTTCAAAGTATGCTGTCAGGGTCGGGTTTACAGCAGTTGCTGCAGTACCTTTAAACTTAGGGCATTCATTAGTGATGTCTCATTATGATAATAAACAAAAGGATTTGGACAACAAGAAGAAGGACACGGACGCAATACGTAGAGAAAGTGAGTCATCCATTACGGAGTTGGGCAACATTAAGTTTCGCATTAATCAGGTGGTAAACGAGATTGATTCACTACTGGCCAAAACCAACACTGCAGTTAAAATGAGTGACCTAGATTTCTTAATGAAGGATATGAAGCAAAAGCTGGAGATGTTCATGAAGAAAATTAACGATTTGGATGCAGAAGCAGTGAAATGCAGCGCTGAAACATTGAAGGCAAGGGATGACGTGCGCAACAGAATCAGACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

210

Amino Acids

22.88

Weight (kDa)

5.64

Isoelectric Point (pI)

39.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF677	PF05055	85 - 208	8.4e-12	Protein of unknown function (DUF677)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007486)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08070 FvH4_2g08070
rosa_chinensis	RchiOBHm_Chr0c38g0503091 RchiOBHm_Chr6g0262571
rosa_laevigata	RLG00000014396 RLG00000014398 RLG00000014409 RLG00000014416
rosa_multiflora	Rmu_sc0000596.1_g000026 Rmu_sc0000596.1_g000060 Rmu_sc0003237.1_g000020 Rmu_sc0007280.1_g000009
rosa_roxburghii	Rroxscaffold_7G00205010 Rroxscaffold_7G00205150
rosa_rugosa	Rorug06G0000300
rosa_samantha	Rh6AG119600 Rh6AG120800 Rh6BG113900 Rh6BG117300 Rh6CG112100 Rh6CG115700 Rh6DG101700 Rh6DG104100
rosa_wichuraiana	Rw6G010370 Rw6G010740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	614
AciI	CCGC	1 cut(s)	56
AcoI	YGGCCR	1 cut(s)	459
AfaI	GTAC	2 cut(s)	195, 282
AfeI	AGCGCT	1 cut(s)	583
AgsI	TTSAA	2 cut(s)	240, 595
AjiI	CACGTC	1 cut(s)	610
AluBI	AGCT	4 cut(s)	24, 140, 161, 526
AluI	AGCT	4 cut(s)	24, 140, 161, 526
Alw26I	GTCTC	2 cut(s)	224, 318
AlwNI	CAGNNNCTG	2 cut(s)	125, 275
Aor51HI	AGCGCT	1 cut(s)	583
AoxI	GGCC	1 cut(s)	459
ApeKI	GCWGC	6 cut(s)	125, 146, 158, 167, 275, 579
AseI	ATTAAT	2 cut(s)	219, 426
AspLEI	GCGC	2 cut(s)	584, 615
BalI	TGGCCA	1 cut(s)	461
BbvI	GCAGC	6 cut(s)	112, 133, 154, 170, 262, 591
BcgI	CGANNNNNNTGC	2 cut(s)	542, 576
BcoDI	GTCTC	2 cut(s)	224, 318
BfaI	CTAG	1 cut(s)	494
BfmI	CTRYAG	2 cut(s)	276, 474
BfoI	RGCGCY	1 cut(s)	585
BisI	GCNGC	6 cut(s)	126, 147, 159, 168, 276, 580
BlsI	GCNGC	6 cut(s)	127, 148, 160, 169, 277, 581
BmgBI	CACGTC	1 cut(s)	610
BmsI	GCATC	4 cut(s)	112, 133, 154, 550
BpmI	CTGGAG	1 cut(s)	548
BsaAI	YACGTR	1 cut(s)	374
BsaWI	WCCGGW	1 cut(s)	89
Bse1I	ACTGG	1 cut(s)	462
BseGI	GGATG	5 cut(s)	175, 203, 389, 565, 610
BseNI	ACTGG	1 cut(s)	462
BseXI	GCAGC	6 cut(s)	112, 133, 154, 170, 262, 591
BsgI	GTGCAG	1 cut(s)	177
BshFI	GGCC	1 cut(s)	461
BsiSI	CCGG	1 cut(s)	90
BsmAI	GTCTC	2 cut(s)	224, 318
BsmI	GAATGC	1 cut(s)	298
BsnI	GGCC	1 cut(s)	461
Bsp143I	GATC	1 cut(s)	36
BspACI	CCGC	1 cut(s)	56
BspANI	GGCC	1 cut(s)	461
BspHI	TCATGA	2 cut(s)	226, 537
BspMAI	CTGCAG	2 cut(s)	280, 478
BsrI	ACTGG	1 cut(s)	462
BssMI	GATC	1 cut(s)	36
BstAPI	GCANNNNNTGC	4 cut(s)	104, 125, 164, 275
BstBAI	YACGTR	1 cut(s)	374
BstC8I	GCNNGC	2 cut(s)	6, 26
BstDEI	CTNAG	2 cut(s)	208, 292
BstF5I	GGATG	5 cut(s)	175, 203, 389, 565, 610
BstH2I	RGCGCY	1 cut(s)	585
BstHHI	GCGC	2 cut(s)	584, 615
BstKTI	GATC	1 cut(s)	39
BstMAI	GTCTC	2 cut(s)	224, 318
BstMBI	GATC	1 cut(s)	36
BstMWI	GCNNNNNNNGC	8 cut(s)	14, 104, 125, 146, 155, 164, 167, 275
BstNSI	RCATGY	1 cut(s)	8
BstSFI	CTRYAG	2 cut(s)	276, 474
BstSNI	TACGTA	1 cut(s)	374
BstV1I	GCAGC	6 cut(s)	112, 133, 154, 170, 262, 591
BsuRI	GGCC	1 cut(s)	461
BtrI	CACGTC	1 cut(s)	610
BtsCI	GGATG	5 cut(s)	175, 203, 389, 565, 610
BtsI	GCAGTG	2 cut(s)	471, 576
BtsIMutI	CAGTG	2 cut(s)	471, 576
Cac8I	GCNNGC	2 cut(s)	6, 26
CaiI	CAGNNNCTG	2 cut(s)	125, 275
CciI	TCATGA	2 cut(s)	226, 537
CfoI	GCGC	2 cut(s)	584, 615
CseI	GACGC	1 cut(s)	374
Csp6I	GTAC	2 cut(s)	194, 281
CviAII	CATG	4 cut(s)	5, 153, 227, 538
CviJI	RGCY	5 cut(s)	24, 140, 161, 461, 526
CviKI_1	RGCY	5 cut(s)	24, 140, 161, 461, 526
CviQI	GTAC	2 cut(s)	194, 281
DdeI	CTNAG	2 cut(s)	208, 292
DpnI	GATC	1 cut(s)	38
DpnII	GATC	1 cut(s)	36
DraI	TTTAAA	1 cut(s)	288
EaeI	YGGCCR	1 cut(s)	459
Eco105I	TACGTA	1 cut(s)	374
Eco47III	AGCGCT	1 cut(s)	583
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	4 cut(s)	8, 156, 230, 541
FaiI	YATR	8 cut(s)	6, 154, 183, 228, 246, 321, 515, 539
FatI	CATG	4 cut(s)	4, 152, 226, 537
Fnu4HI	GCNGC	6 cut(s)	126, 147, 159, 168, 276, 580
FokI	GGATG	5 cut(s)	162, 190, 376, 572, 617
Fsp4HI	GCNGC	6 cut(s)	126, 147, 159, 168, 276, 580
FspBI	CTAG	1 cut(s)	494
FspI	TGCGCA	1 cut(s)	614
GlaI	GCGC	2 cut(s)	583, 614
GluI	GCNGC	6 cut(s)	126, 147, 159, 168, 276, 580
GsuI	CTGGAG	1 cut(s)	548
HaeII	RGCGCY	1 cut(s)	585
HaeIII	GGCC	1 cut(s)	461
HapII	CCGG	1 cut(s)	90
HgaI	GACGC	1 cut(s)	374
HhaI	GCGC	2 cut(s)	584, 615
Hin1II	CATG	4 cut(s)	8, 156, 230, 541
Hin6I	GCGC	2 cut(s)	582, 613
HinP1I	GCGC	2 cut(s)	582, 613
HindIII	AAGCTT	1 cut(s)	22
HinfI	GANTC	5 cut(s)	188, 386, 449, 621, 627
HpaII	CCGG	1 cut(s)	90
Hpy166II	GTNNAC	2 cut(s)	264, 439
Hpy188I	TCNGA	2 cut(s)	112, 626
Hpy188III	TCNNGA	2 cut(s)	227, 538
Hpy8I	GTNNAC	2 cut(s)	264, 439
HpyAV	CCTTC	3 cut(s)	349, 502, 589
HpyCH4IV	ACGT	2 cut(s)	373, 609
HpyCH4V	TGCA	9 cut(s)	4, 28, 98, 119, 158, 278, 476, 563, 579
HpyF10VI	GCNNNNNNNGC	8 cut(s)	14, 104, 125, 146, 155, 164, 167, 275
HpyF3I	CTNAG	2 cut(s)	208, 292
HpySE526I	ACGT	2 cut(s)	373, 609
Hsp92II	CATG	4 cut(s)	8, 156, 230, 541
HspAI	GCGC	2 cut(s)	582, 613
Kzo9I	GATC	1 cut(s)	36
LpnPI	CCDG	5 cut(s)	103, 238, 416, 443, 512
Lsp1109I	GCAGC	6 cut(s)	112, 133, 154, 170, 262, 591
LweI	GCATC	4 cut(s)	112, 133, 154, 550
MaeI	CTAG	1 cut(s)	494
MaeII	ACGT	2 cut(s)	373, 609
MaeIII	GTNAC	1 cut(s)	488
MalI	GATC	1 cut(s)	38
MboI	GATC	1 cut(s)	36
MboII	GAAGA	2 cut(s)	364, 553
MlsI	TGGCCA	1 cut(s)	461
MluCI	AATT	3 cut(s)	10, 102, 546
MluNI	TGGCCA	1 cut(s)	461
MlyI	GAGTC	3 cut(s)	197, 395, 621
Mox20I	TGGCCA	1 cut(s)	461
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	461
MseI	TTAA	7 cut(s)	219, 287, 414, 426, 480, 503, 549
Msp20I	TGGCCA	1 cut(s)	461
MspA1I	CMGCKG	2 cut(s)	140, 161
MspI	CCGG	1 cut(s)	90
Mva1269I	GAATGC	1 cut(s)	298
MwoI	GCNNNNNNNGC	8 cut(s)	14, 104, 125, 146, 155, 164, 167, 275
NdeII	GATC	1 cut(s)	36
NlaIII	CATG	4 cut(s)	8, 156, 230, 541
NmuCI	GTSAC	1 cut(s)	488
NsbI	TGCGCA	1 cut(s)	614
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
PaeI	GCATGC	1 cut(s)	8
PagI	TCATGA	2 cut(s)	226, 537
PctI	GAATGC	1 cut(s)	298
PfeI	GAWTC	2 cut(s)	449, 621
PkrI	GCNGC	6 cut(s)	127, 148, 160, 169, 277, 581
PleI	GAGTC	3 cut(s)	196, 394, 621
PpsI	GAGTC	3 cut(s)	196, 394, 621
Ppu21I	YACGTR	1 cut(s)	374
PshBI	ATTAAT	2 cut(s)	219, 426
PstI	CTGCAG	2 cut(s)	280, 478
PstNI	CAGNNNCTG	2 cut(s)	125, 275
PvuII	CAGCTG	2 cut(s)	140, 161
RsaI	GTAC	2 cut(s)	195, 282
RsaNI	GTAC	2 cut(s)	194, 281
SaqAI	TTAA	7 cut(s)	219, 287, 414, 426, 480, 503, 549
SatI	GCNGC	6 cut(s)	126, 147, 159, 168, 276, 580
Sau3AI	GATC	1 cut(s)	36
SchI	GAGTC	3 cut(s)	197, 395, 621
SfaNI	GCATC	4 cut(s)	112, 133, 154, 550
SfcI	CTRYAG	2 cut(s)	276, 474
SnaBI	TACGTA	1 cut(s)	374
SphI	GCATGC	1 cut(s)	8
Sse9I	AATT	3 cut(s)	10, 102, 546
SsiI	CCGC	1 cut(s)	56
SspMI	CTAG	1 cut(s)	494
TaiI	ACGT	2 cut(s)	376, 612
TasI	AATT	3 cut(s)	10, 102, 546
TatI	WGTACW	1 cut(s)	193
TfiI	GAWTC	2 cut(s)	449, 621
Tru1I	TTAA	7 cut(s)	219, 287, 414, 426, 480, 503, 549
Tru9I	TTAA	7 cut(s)	219, 287, 414, 426, 480, 503, 549
TscAI	CASTG	2 cut(s)	478, 576
TseFI	GTSAC	1 cut(s)	488
TseI	GCWGC	6 cut(s)	125, 146, 158, 167, 275, 579
Tsp45I	GTSAC	1 cut(s)	488
TspDTI	ATGAA	6 cut(s)	141, 291, 521, 526, 530, 554
TspGWI	ACGGA	2 cut(s)	377, 413
TspRI	CASTG	2 cut(s)	478, 576
VspI	ATTAAT	2 cut(s)	219, 426
XceI	RCATGY	1 cut(s)	8
XcmI	CCANNNNNNNNNTGG	1 cut(s)	400
XspI	CTAG	1 cut(s)	494
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.