Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0007486

Physical Location & Seq

Genomic Coordinates Reverse (-)

52922391 .. 52923584

Gene Structure 1194 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014416

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGGAGAGTCATATAAGAAGCATAATGAACAGTTGAAATCATTCAAGGATGACCCAGTCGTGGAATCCCTTGCCAACAACATAAAATTACGTGCTGAAGCTGTCAACAACATACGTAAGAAGGAGGGTTTTTCTATCGCTTTTCTGAAAGAAGTGACGGCATTTGTTTCCTACATGAATGGCCAAGCTGCCTCTGTAATCTTGGCATGCAAACAGGATATATCGACTAGCAACAAGAGCTTTAAGCTGGTCGTCAATGAGTACTTGAACAATAGTGAGCAGCTGCTGGACTTCTGTTCTGCATTGGATAAGTTCGTGAAGTCAGCTCGGGATAGTCATTCATATACACAATATGTGGTTCAACAGTACTTTGACAACAAGATGGAAACTGAGTACTGCCTGAAGATTTTGGAGAAACTGAAGAATCTCAAGTCCTCTGATGACATCCATGCTCATTCTGCTGAGAGCTTGTACCAAAAGATCAAAGGTTTGATTGCGCAGTTTGAAAAAATATGCAAGAATTTGGAGCAGGAAATTGTTAAGATTGATGAAGAGAAGAATCGTGTTGGTACTCAGAAGAAACGCACAAGTCTTGTATATAAGAGTGTTTCTGCGATTGGTCTGGTTTTTGCAGGACTTATAGGTGCGGATTTCTTACCAGATTTAGCAGACATTGTTTCTGGTATTGGAGATGTTTCTGATGTTGCAGATGCTGTTTCTAATACAGCGGATGCTACTACTCAACCACATATTGAGTCAACAACATCCTTAGAAAGTATTAATAATAATGAGACTGCTTCAAAGTATGCTGTCAAGGCCGGGTTTACAGCAGTTGCTGCAGTACCTTTAAACTTAGGGCATTCATTAGTGATGTCTCATTATGATAATAAACAAAAGGTTTTGGACAACAAGAAGAAGGACATGGACGCAATACGTAGAGAAAGTGAGTCATCCATTACGGAGTTGGGCAACATTAAGTTTTGCATTAATCAGGTGGTAAACGAGATTGATTCACTACTGGCCAAAACCAACACTGCAGTTAAAATGGGTGACATAGATTTCTTAATGAAGGATATGAAGCAAAAGCTGGAGATGTTCATGAAGAAAATTGACAATTTGGATGCAGAAGCAGTGAAATGCAGCGCTGAAACATTGAAGGCAAGGGATGACGTGCGCAACAGAATCAGACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

398

Amino Acids

44.34

Weight (kDa)

6.68

Isoelectric Point (pI)

34.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF677	PF05055	44 - 211	2.6e-16	Protein of unknown function (DUF677)
DUF677	PF05055	272 - 395	2.2e-11	Protein of unknown function (DUF677)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007486)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08070 FvH4_2g08070
rosa_chinensis	RchiOBHm_Chr0c38g0503091 RchiOBHm_Chr6g0262571
rosa_laevigata	RLG00000014396 RLG00000014398 RLG00000014409 RLG00000014416
rosa_multiflora	Rmu_sc0000596.1_g000026 Rmu_sc0000596.1_g000060 Rmu_sc0003237.1_g000020 Rmu_sc0007280.1_g000009
rosa_roxburghii	Rroxscaffold_7G00205010 Rroxscaffold_7G00205150
rosa_rugosa	Rorug06G0000300
rosa_samantha	Rh6AG119600 Rh6AG120800 Rh6BG113900 Rh6BG117300 Rh6CG112100 Rh6CG115700 Rh6DG101700 Rh6DG104100
rosa_wichuraiana	Rw6G010370 Rw6G010740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	498, 1175
AciI	CCGC	2 cut(s)	647, 728
AcoI	YGGCCR	2 cut(s)	181, 1020
AcsI	RAATTY	1 cut(s)	520
AcuI	CTGAAG	3 cut(s)	117, 422, 440
AfaI	GTAC	6 cut(s)	263, 368, 395, 473, 571, 843
AfeI	AGCGCT	1 cut(s)	1144
AfiI	CCNNNNNNNGG	1 cut(s)	61
AgsI	TTSAA	7 cut(s)	37, 46, 268, 362, 506, 801, 1156
AjiI	CACGTC	1 cut(s)	1171
AluBI	AGCT	8 cut(s)	101, 188, 240, 247, 283, 326, 468, 1087
AluI	AGCT	8 cut(s)	101, 188, 240, 247, 283, 326, 468, 1087
Alw26I	GTCTC	2 cut(s)	785, 879
AlwNI	CAGNNNCTG	3 cut(s)	286, 713, 836
Ama87I	CYCGRG	1 cut(s)	327
Aor51HI	AGCGCT	1 cut(s)	1144
AoxI	GGCC	3 cut(s)	181, 816, 1020
ApeKI	GCWGC	5 cut(s)	188, 280, 283, 836, 1140
ApoI	RAATTY	1 cut(s)	520
AseI	ATTAAT	2 cut(s)	780, 987
Asp700I	GAANNNNTTC	1 cut(s)	41
AspLEI	GCGC	3 cut(s)	499, 1145, 1176
AsuC2I	CCSGG	1 cut(s)	820
AsuHPI	GGTGA	1 cut(s)	1061
AvaI	CYCGRG	1 cut(s)	327
BalI	TGGCCA	2 cut(s)	183, 1022
BbvI	GCAGC	5 cut(s)	175, 270, 292, 823, 1152
BccI	CCATC	1 cut(s)	376
BceAI	ACGGC	1 cut(s)	174
BcnI	CCSGG	1 cut(s)	820
BcoDI	GTCTC	2 cut(s)	785, 879
BfaI	CTAG	2 cut(s)	228, 1192
BfmI	CTRYAG	2 cut(s)	837, 1035
BfoI	RGCGCY	1 cut(s)	1146
BisI	GCNGC	5 cut(s)	189, 281, 284, 837, 1141
BlsI	GCNGC	5 cut(s)	190, 282, 285, 838, 1142
BmcAI	AGTACT	3 cut(s)	263, 368, 395
Bme1390I	CCNGG	1 cut(s)	820
BmeT110I	CYCGRG	1 cut(s)	327
BmgBI	CACGTC	1 cut(s)	1171
BmrFI	CCNGG	1 cut(s)	820
BmrI	ACTGGG	1 cut(s)	50
BmsI	GCATC	3 cut(s)	700, 721, 1111
BmuI	ACTGGG	1 cut(s)	50
BpmI	CTGGAG	1 cut(s)	1109
BpuEI	CTTGAG	1 cut(s)	413
BpuMI	CCSGG	1 cut(s)	820
BsaAI	YACGTR	3 cut(s)	92, 116, 935
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse1I	ACTGG	2 cut(s)	56, 1023
BseGI	GGATG	7 cut(s)	55, 444, 736, 764, 950, 1126, 1171
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMII	CTCAG	3 cut(s)	381, 453, 587
BseNI	ACTGG	2 cut(s)	56, 1023
BseXI	GCAGC	5 cut(s)	175, 270, 292, 823, 1152
BshFI	GGCC	3 cut(s)	183, 818, 1022
BsiHKCI	CYCGRG	1 cut(s)	327
BsiSI	CCGG	1 cut(s)	819
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmAI	GTCTC	2 cut(s)	785, 879
BsmI	GAATGC	1 cut(s)	859
BsnI	GGCC	3 cut(s)	183, 818, 1022
BsoBI	CYCGRG	1 cut(s)	327
Bsp143I	GATC	1 cut(s)	480
BspACI	CCGC	2 cut(s)	647, 728
BspANI	GGCC	3 cut(s)	183, 818, 1022
BspCNI	CTCAG	3 cut(s)	382, 454, 586
BspHI	TCATGA	1 cut(s)	1098
BspMAI	CTGCAG	2 cut(s)	841, 1039
BsrI	ACTGG	2 cut(s)	56, 1023
BssMI	GATC	1 cut(s)	480
Bst4CI	ACNGT	2 cut(s)	33, 366
Bst6I	CTCTTC	1 cut(s)	546
BstAPI	GCANNNNNTGC	1 cut(s)	836
BstBAI	YACGTR	3 cut(s)	92, 116, 935
BstC8I	GCNNGC	1 cut(s)	208
BstDEI	CTNAG	5 cut(s)	390, 462, 573, 769, 853
BstF5I	GGATG	7 cut(s)	55, 444, 736, 764, 950, 1126, 1171
BstH2I	RGCGCY	1 cut(s)	1146
BstHHI	GCGC	3 cut(s)	499, 1145, 1176
BstKTI	GATC	1 cut(s)	483
BstMAI	GTCTC	2 cut(s)	785, 879
BstMBI	GATC	1 cut(s)	480
BstMWI	GCNNNNNNNGC	4 cut(s)	237, 458, 815, 836
BstNSI	RCATGY	1 cut(s)	210
BstSCI	CCNGG	1 cut(s)	818
BstSFI	CTRYAG	2 cut(s)	837, 1035
BstSNI	TACGTA	2 cut(s)	116, 935
BstV1I	GCAGC	5 cut(s)	175, 270, 292, 823, 1152
BsuRI	GGCC	3 cut(s)	183, 818, 1022
BtrI	CACGTC	1 cut(s)	1171
BtsCI	GGATG	7 cut(s)	55, 444, 736, 764, 950, 1126, 1171
BtsI	GCAGTG	2 cut(s)	1032, 1137
BtsIMutI	CAGTG	2 cut(s)	1032, 1137
Cac8I	GCNNGC	1 cut(s)	208
CaiI	CAGNNNCTG	3 cut(s)	286, 713, 836
CciI	TCATGA	1 cut(s)	1098
CfoI	GCGC	3 cut(s)	499, 1145, 1176
CseI	GACGC	1 cut(s)	935
Csp6I	GTAC	6 cut(s)	262, 367, 394, 472, 570, 842
CviAII	CATG	5 cut(s)	175, 207, 449, 922, 1099
CviQI	GTAC	6 cut(s)	262, 367, 394, 472, 570, 842
DdeI	CTNAG	5 cut(s)	390, 462, 573, 769, 853
DpnI	GATC	1 cut(s)	482
DpnII	GATC	1 cut(s)	480
DraI	TTTAAA	1 cut(s)	849
EaeI	YGGCCR	2 cut(s)	181, 1020
Eam1104I	CTCTTC	1 cut(s)	546
EarI	CTCTTC	1 cut(s)	546
Eco105I	TACGTA	2 cut(s)	116, 935
Eco47III	AGCGCT	1 cut(s)	1144
Eco57I	CTGAAG	3 cut(s)	117, 422, 440
Eco88I	CYCGRG	1 cut(s)	327
FaeI	CATG	5 cut(s)	178, 210, 452, 925, 1102
FatI	CATG	5 cut(s)	174, 206, 448, 921, 1098
Fnu4HI	GCNGC	5 cut(s)	189, 281, 284, 837, 1141
FokI	GGATG	7 cut(s)	62, 431, 743, 751, 937, 1133, 1178
Fsp4HI	GCNGC	5 cut(s)	189, 281, 284, 837, 1141
FspBI	CTAG	2 cut(s)	228, 1192
FspI	TGCGCA	2 cut(s)	498, 1175
GlaI	GCGC	3 cut(s)	498, 1144, 1175
GluI	GCNGC	5 cut(s)	189, 281, 284, 837, 1141
GsuI	CTGGAG	1 cut(s)	1109
HaeII	RGCGCY	1 cut(s)	1146
HaeIII	GGCC	3 cut(s)	183, 818, 1022
HapII	CCGG	1 cut(s)	819
HgaI	GACGC	1 cut(s)	935
HhaI	GCGC	3 cut(s)	499, 1145, 1176
Hin1II	CATG	5 cut(s)	178, 210, 452, 925, 1102
Hin6I	GCGC	3 cut(s)	497, 1143, 1174
HinP1I	GCGC	3 cut(s)	497, 1143, 1174
HincII	GTYRAC	2 cut(s)	106, 759
HindII	GTYRAC	2 cut(s)	106, 759
HinfI	GANTC	9 cut(s)	8, 65, 424, 559, 755, 947, 1010, 1182, 1188
HpaII	CCGG	1 cut(s)	819
HphI	GGTGA	1 cut(s)	1061
Hpy166II	GTNNAC	4 cut(s)	106, 759, 825, 1000
Hpy188I	TCNGA	5 cut(s)	147, 439, 576, 700, 1187
Hpy188III	TCNNGA	3 cut(s)	316, 329, 1099
Hpy8I	GTNNAC	4 cut(s)	106, 759, 825, 1000
HpyAV	CCTTC	4 cut(s)	115, 910, 1063, 1150
HpyCH4III	ACNGT	2 cut(s)	33, 366
HpyCH4IV	ACGT	4 cut(s)	91, 115, 934, 1170
HpyF10VI	GCNNNNNNNGC	4 cut(s)	237, 458, 815, 836
HpyF3I	CTNAG	5 cut(s)	390, 462, 573, 769, 853
HpySE526I	ACGT	4 cut(s)	91, 115, 934, 1170
Hsp92II	CATG	5 cut(s)	178, 210, 452, 925, 1102
HspAI	GCGC	3 cut(s)	497, 1143, 1174
Kzo9I	GATC	1 cut(s)	480
LmnI	GCTCC	1 cut(s)	526
Lsp1109I	GCAGC	5 cut(s)	175, 270, 292, 823, 1152
LweI	GCATC	3 cut(s)	700, 721, 1111
MaeI	CTAG	2 cut(s)	228, 1192
MaeII	ACGT	4 cut(s)	91, 115, 934, 1170
MaeIII	GTNAC	2 cut(s)	154, 1049
MalI	GATC	1 cut(s)	482
MboI	GATC	1 cut(s)	480
MboII	GAAGA	7 cut(s)	415, 433, 563, 568, 589, 925, 1114
MlsI	TGGCCA	2 cut(s)	183, 1022
MluCI	AATT	5 cut(s)	86, 520, 534, 1107, 1114
MluNI	TGGCCA	2 cut(s)	183, 1022
MlyI	GAGTC	4 cut(s)	17, 764, 956, 1182
MnlI	CCTC	3 cut(s)	118, 202, 445
Mox20I	TGGCCA	2 cut(s)	183, 1022
MroXI	GAANNNNTTC	1 cut(s)	41
MscI	TGGCCA	2 cut(s)	183, 1022
MseI	TTAA	8 cut(s)	243, 540, 780, 848, 975, 987, 1041, 1064
Msp20I	TGGCCA	2 cut(s)	183, 1022
MspA1I	CMGCKG	2 cut(s)	283, 728
MspI	CCGG	1 cut(s)	819
MspR9I	CCNGG	1 cut(s)	820
Mva1269I	GAATGC	1 cut(s)	859
MwoI	GCNNNNNNNGC	4 cut(s)	237, 458, 815, 836
NciI	CCSGG	1 cut(s)	820
NdeII	GATC	1 cut(s)	480
NlaIII	CATG	5 cut(s)	178, 210, 452, 925, 1102
NmuCI	GTSAC	2 cut(s)	154, 1049
NsbI	TGCGCA	2 cut(s)	498, 1175
NspI	RCATGY	1 cut(s)	210
PaeI	GCATGC	1 cut(s)	210
PagI	TCATGA	1 cut(s)	1098
PctI	GAATGC	1 cut(s)	859
PdmI	GAANNNNTTC	1 cut(s)	41
PfeI	GAWTC	5 cut(s)	65, 424, 559, 1010, 1182
PflFI	GACNNNGTC	1 cut(s)	56
PkrI	GCNGC	5 cut(s)	190, 282, 285, 838, 1142
PleI	GAGTC	4 cut(s)	16, 763, 955, 1182
PpsI	GAGTC	4 cut(s)	16, 763, 955, 1182
Ppu21I	YACGTR	3 cut(s)	92, 116, 935
PshBI	ATTAAT	2 cut(s)	780, 987
PstI	CTGCAG	2 cut(s)	841, 1039
PstNI	CAGNNNCTG	3 cut(s)	286, 713, 836
PsyI	GACNNNGTC	1 cut(s)	56
PvuII	CAGCTG	1 cut(s)	283
RsaI	GTAC	6 cut(s)	263, 368, 395, 473, 571, 843
RsaNI	GTAC	6 cut(s)	262, 367, 394, 472, 570, 842
SaqAI	TTAA	8 cut(s)	243, 540, 780, 848, 975, 987, 1041, 1064
SatI	GCNGC	5 cut(s)	189, 281, 284, 837, 1141
Sau3AI	GATC	1 cut(s)	480
ScaI	AGTACT	3 cut(s)	263, 368, 395
SchI	GAGTC	4 cut(s)	17, 764, 956, 1182
ScrFI	CCNGG	1 cut(s)	820
SfaNI	GCATC	3 cut(s)	700, 721, 1111
SfcI	CTRYAG	2 cut(s)	837, 1035
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
SnaBI	TACGTA	2 cut(s)	116, 935
SphI	GCATGC	1 cut(s)	210
Sse9I	AATT	5 cut(s)	86, 520, 534, 1107, 1114
SsiI	CCGC	2 cut(s)	647, 728
SspMI	CTAG	2 cut(s)	228, 1192
StyD4I	CCNGG	1 cut(s)	818
TaaI	ACNGT	2 cut(s)	33, 366
TaiI	ACGT	4 cut(s)	94, 118, 937, 1173
TaqI	TCGA	1 cut(s)	224
TasI	AATT	5 cut(s)	86, 520, 534, 1107, 1114
TatI	WGTACW	3 cut(s)	261, 366, 393
TfiI	GAWTC	5 cut(s)	65, 424, 559, 1010, 1182
Tru1I	TTAA	8 cut(s)	243, 540, 780, 848, 975, 987, 1041, 1064
Tru9I	TTAA	8 cut(s)	243, 540, 780, 848, 975, 987, 1041, 1064
TscAI	CASTG	2 cut(s)	1039, 1137
TseFI	GTSAC	2 cut(s)	154, 1049
TseI	GCWGC	5 cut(s)	188, 280, 283, 836, 1140
Tsp45I	GTSAC	2 cut(s)	154, 1049
TspDTI	ATGAA	9 cut(s)	42, 191, 330, 564, 852, 1082, 1087, 1091, 1115
TspGWI	ACGGA	1 cut(s)	974
TspRI	CASTG	2 cut(s)	1039, 1137
Tth111I	GACNNNGTC	1 cut(s)	56
VspI	ATTAAT	2 cut(s)	780, 987
XapI	RAATTY	1 cut(s)	520
XceI	RCATGY	1 cut(s)	210
XcmI	CCANNNNNNNNNTGG	1 cut(s)	961
XmnI	GAANNNNTTC	1 cut(s)	41
XspI	CTAG	2 cut(s)	228, 1192
ZrmI	AGTACT	3 cut(s)	263, 368, 395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.