Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002714

Physical Location & Seq

Genomic Coordinates Reverse (-)

8275917 .. 8276550

Gene Structure 634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g09340.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGATCCAATCAATGGGGTTGTCCCGGTCGAACAGAAATCCCCGTCTAAACCAATTTCCGTTGAGGAGGGTGAACGCCAAGAGGGTAAGCATGAAAATCATCACAAAAATATCTGCTCTTAATTTTGGCGCATCATCTTACAACTCGTGCTGTGACATCGTAGAGGAGAGTGCTCCACCCGAGAGGCAGGTCTCCCCTCAAAAGCTCTACCGCGCAGCTTTATTGAGGAATCGGTTTGCAGACACAATATTTAAAGCGAAGGAGAAGGCACTACTTGAAAAGGGTGATAAGTTGGATCCAGAAAAATTACGAATTGAGAGGGAGGAACTTGAAAGGAGGCATAAAGAAGGTGTGCTTTCTATAGTTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0008150 GO:0009266 GO:0009267 GO:0009409 GO:0009605 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0033993 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051365 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0080090 GO:0097305 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

124

Amino Acids

14.15

Weight (kDa)

10.07

Isoelectric Point (pI)

55.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63320 AT5G63320 AT5G63320
fragaria_vesca	FvH4_2g09340 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g15310 FvH4_7g03961
malus_domestica	MD06G1147900.v1.1 MD14G1162200.v1.1
prunus_persica	Prupe.5G154800_v2.0.a1
pyrus_communis	pycom06g13720 pycom06g13730 pycom14g13510 pycom72g00010
rosa_chinensis	RchiOBHm_Chr7g0190781
rosa_laevigata	RLG00000004496 RLG00000004499
rosa_multiflora	Rmu_co8422347.1_g000001 Rmu_sc0002819.1_g000007
rosa_roxburghii	Rroxscaffold_3G00264320
rosa_rugosa	Rorug06G0506700 Rorug06G0506700 Rorug06G0506700 Rorug06G0506800
rosa_samantha	Rh7AG113500 Rh7BG116000 Rh7CG118600 Rh7DG117500
rosa_wichuraiana	Rw7G009910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	178
AccB7I	CCANNNNNTGG	1 cut(s)	13
AccII	CGCG	1 cut(s)	213
AciI	CCGC	1 cut(s)	211
AclWI	GGATC	2 cut(s)	290, 303
AfiI	CCNNNNNNNGG	1 cut(s)	13
AgsI	TTSAA	2 cut(s)	278, 332
AluBI	AGCT	2 cut(s)	205, 218
AluI	AGCT	2 cut(s)	205, 218
Alw21I	GWGCWC	1 cut(s)	175
Alw26I	GTCTC	1 cut(s)	196
AlwI	GGATC	2 cut(s)	290, 303
Ama87I	CYCGRG	1 cut(s)	179
ApeKI	GCWGC	1 cut(s)	215
AspLEI	GCGC	2 cut(s)	131, 215
AsuC2I	CCSGG	1 cut(s)	25
AsuHPI	GGTGA	2 cut(s)	82, 296
AvaI	CYCGRG	1 cut(s)	179
BamHI	GGATCC	1 cut(s)	295
BauI	CACGAG	1 cut(s)	145
Bbv12I	GWGCWC	1 cut(s)	175
BbvI	GCAGC	1 cut(s)	227
BcnI	CCSGG	1 cut(s)	25
BcoDI	GTCTC	1 cut(s)	196
BfmI	CTRYAG	1 cut(s)	360
BfuAI	ACCTGC	1 cut(s)	178
BisI	GCNGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	217
Bme1390I	CCNGG	1 cut(s)	25
BmeT110I	CYCGRG	1 cut(s)	179
BmiI	GGNNCC	1 cut(s)	297
BmrFI	CCNGG	1 cut(s)	25
BmsI	GCATC	1 cut(s)	140
BpuMI	CCSGG	1 cut(s)	25
BsaI	GGTCTC	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	1 cut(s)	13
BseLI	CCNNNNNNNGG	1 cut(s)	13
BseRI	GAGGAG	2 cut(s)	79, 179
BseXI	GCAGC	1 cut(s)	227
Bsh1236I	CGCG	1 cut(s)	213
Bsh1285I	CGRYCG	1 cut(s)	29
BsiEI	CGRYCG	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	175
BsiHKCI	CYCGRG	1 cut(s)	179
BsiSI	CCGG	1 cut(s)	25
BslFI	GGGAC	1 cut(s)	7
BslI	CCNNNNNNNGG	1 cut(s)	13
BsmAI	GTCTC	1 cut(s)	196
BsmFI	GGGAC	1 cut(s)	7
Bso31I	GGTCTC	1 cut(s)	196
BsoBI	CYCGRG	1 cut(s)	179
Bsp1286I	GDGCHC	1 cut(s)	175
Bsp143I	GATC	2 cut(s)	3, 295
BspACI	CCGC	1 cut(s)	211
BspFNI	CGCG	1 cut(s)	213
BspLI	GGNNCC	1 cut(s)	297
BspMI	ACCTGC	1 cut(s)	178
BspPI	GGATC	2 cut(s)	290, 303
BspTNI	GGTCTC	1 cut(s)	196
BssMI	GATC	2 cut(s)	3, 295
BssSI	CACGAG	1 cut(s)	145
Bst2BI	CACGAG	1 cut(s)	145
BstFNI	CGCG	1 cut(s)	213
BstHHI	GCGC	2 cut(s)	131, 215
BstKTI	GATC	2 cut(s)	6, 298
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	2 cut(s)	3, 295
BstMCI	CGRYCG	1 cut(s)	29
BstSCI	CCNGG	1 cut(s)	23
BstSFI	CTRYAG	1 cut(s)	360
BstUI	CGCG	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	227
BstX2I	RGATCY	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	295
BveI	ACCTGC	1 cut(s)	178
CfoI	GCGC	2 cut(s)	131, 215
CviAII	CATG	1 cut(s)	91
CviJI	RGCY	2 cut(s)	205, 218
CviKI_1	RGCY	2 cut(s)	205, 218
DpnI	GATC	2 cut(s)	5, 297
DpnII	GATC	2 cut(s)	3, 295
DraI	TTTAAA	1 cut(s)	253
Eco31I	GGTCTC	1 cut(s)	196
Eco88I	CYCGRG	1 cut(s)	179
FaeI	CATG	1 cut(s)	94
FaiI	YATR	3 cut(s)	92, 342, 362
FalI	AAGNNNNNCTT	2 cut(s)	339, 371
FaqI	GGGAC	1 cut(s)	7
FatI	CATG	1 cut(s)	90
Fnu4HI	GCNGC	1 cut(s)	216
Fsp4HI	GCNGC	1 cut(s)	216
GlaI	GCGC	2 cut(s)	130, 214
GluI	GCNGC	1 cut(s)	216
HapII	CCGG	1 cut(s)	25
HhaI	GCGC	2 cut(s)	131, 215
Hin1II	CATG	1 cut(s)	94
Hin6I	GCGC	2 cut(s)	129, 213
HinP1I	GCGC	2 cut(s)	129, 213
HinfI	GANTC	1 cut(s)	229
HpaII	CCGG	1 cut(s)	25
HphI	GGTGA	2 cut(s)	82, 296
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188III	TCNNGA	1 cut(s)	299
Hpy8I	GTNNAC	1 cut(s)	73
HpyAV	CCTTC	3 cut(s)	253, 259, 341
HpyCH4V	TGCA	1 cut(s)	239
Hsp92II	CATG	1 cut(s)	94
HspAI	GCGC	2 cut(s)	129, 213
Kzo9I	GATC	2 cut(s)	3, 295
LmnI	GCTCC	1 cut(s)	178
LpnPI	CCDG	3 cut(s)	38, 173, 312
Lsp1109I	GCAGC	1 cut(s)	227
LweI	GCATC	1 cut(s)	140
MaeIII	GTNAC	1 cut(s)	152
MalI	GATC	2 cut(s)	5, 297
MboI	GATC	2 cut(s)	3, 295
MflI	RGATCY	1 cut(s)	295
MhlI	GDGCHC	1 cut(s)	175
MluCI	AATT	4 cut(s)	53, 121, 305, 312
MmeI	TCCRAC	1 cut(s)	273
MseI	TTAA	2 cut(s)	120, 252
MspI	CCGG	1 cut(s)	25
MspR9I	CCNGG	1 cut(s)	25
MvnI	CGCG	1 cut(s)	213
NciI	CCSGG	1 cut(s)	25
NdeII	GATC	2 cut(s)	3, 295
NlaIII	CATG	1 cut(s)	94
NlaIV	GGNNCC	1 cut(s)	297
NmuCI	GTSAC	1 cut(s)	152
PfeI	GAWTC	1 cut(s)	229
PflMI	CCANNNNNTGG	1 cut(s)	13
PkrI	GCNGC	1 cut(s)	217
PspN4I	GGNNCC	1 cut(s)	297
PsuI	RGATCY	1 cut(s)	295
SaqAI	TTAA	2 cut(s)	120, 252
SatI	GCNGC	1 cut(s)	216
Sau3AI	GATC	2 cut(s)	3, 295
ScrFI	CCNGG	1 cut(s)	25
SduI	GDGCHC	1 cut(s)	175
SetI	ASST	4 cut(s)	192, 207, 220, 352
SfaNI	GCATC	1 cut(s)	140
SfcI	CTRYAG	1 cut(s)	360
Sse9I	AATT	4 cut(s)	53, 121, 305, 312
SsiI	CCGC	1 cut(s)	211
SspI	AATATT	1 cut(s)	249
StyD4I	CCNGG	1 cut(s)	23
TaqI	TCGA	1 cut(s)	29
TasI	AATT	4 cut(s)	53, 121, 305, 312
TfiI	GAWTC	1 cut(s)	229
Tru1I	TTAA	2 cut(s)	120, 252
Tru9I	TTAA	2 cut(s)	120, 252
TseFI	GTSAC	1 cut(s)	152
TseI	GCWGC	1 cut(s)	215
Tsp45I	GTSAC	1 cut(s)	152
TspDTI	ATGAA	1 cut(s)	107
TspGWI	ACGGA	1 cut(s)	48
Van91I	CCANNNNNTGG	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.