Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002714

Physical Location & Seq

Genomic Coordinates Forward (+)

8673164 .. 8681785

Gene Structure 8622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g15310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGTCATTGAAGCAATCAAAGAAAAGCTTGGTTCTGAAGCAAATTCAGAACCGAAGAGAAGTGATCCAGGTGGTTCTGAAATTGGCAATGATCCAATCAATGGGGTTGTCCCGGTCGAACAGAAATCCCCGTCTAAACCAATTTCCGTTGAGGAGGGTGAACACCAAGAGGGTAAGCATGAAAATCATCACAAAAATATATGCTCTTAATTTCGGCGCATCATCTTACAACTCGTGCTGTGACATCGTAGAGGAGAGTGCTCCACCCGAGAGGCAGGTCTCCCCTCAAAAGCTCTACCGCGTAGCTTTATTGAGGAATCGGTTTGCAGACACAATATTTAAAACGAAGGAGAAGGCACTACTTGAAAAGGGTGATAAGTTGGATCCAGAAAAACTACGAATTGAGAGGGAGGAACTTGAAAGGAGGCGTAAAGAAGGCTCGAAAAAAACACGCTTGCAAGCCGAGGCCAGAGCTGCAGAAGAAGCTCAAAAAAAGGCTGCAGCTGAAGCTAGAGGGCAAAGGGAACTAGAGAGAGAAGTTGCTCGCCAGGCATTGCAAATGATGGAAAAGACTGTTGAAATCAATAAGAACAGTCGTTTCATGGGAGATCTAGAAATGTTTAAGGCTGGTGACGATGATCATTTACCACATTACATCGAGGAAACCAGCCCTGAGCATTCTCATAATGAGCCTGGTAGTTTCAAACTGCAGGGAAGCAGTAATCCCTTAGAGCAACTTGGCTTATTCATGAAGGCCGATGATGATATAGAAATAGAGGATGTGCTTGTTGTTGGTTGTATGGAATTGTTTTGGTGTATTTTGCAGGTTGCTTGGAATGTTGCATCCCTATCGGCAACAATCTTTGGTGCGCCGCCCTTCACAGAAGCTTGCCCCTCGTTTTTATGGACCCTTCTAGATTGCTGCAAAGGTAAGCTCCTTCTACCAGATAATTGCAAGTTGCATCCCATTTTTCATGTGTCTCTCCTTAAACGCCGCATTGGTGACCATGCACCGGTTGCTTCTACATTGCCTCAATTTGATGATCATGGCGTCATTGAGTGGAAACCAGAGCGTGTGCTTGACATGGCTATCTTCACCAAACATCGGCGCTCAATTACGAAATGGCTTGTGGCTTGGGAGGGACTCCCTCTGGAAGATGCGACTTGGGAGGAAGCTCGTGCCATGGTTCGCAGATTTCCAGACTTTCAAGCTTGTCCTTATGGGGGGAGGACTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0008150 GO:0009266 GO:0009267 GO:0009409 GO:0009605 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0033993 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051365 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0080090 GO:0097305 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

413

Amino Acids

47.25

Weight (kDa)

8.89

Isoelectric Point (pI)

59.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63320 AT5G63320 AT5G63320
fragaria_vesca	FvH4_2g09340 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g15310 FvH4_7g03961
malus_domestica	MD06G1147900.v1.1 MD14G1162200.v1.1
prunus_persica	Prupe.5G154800_v2.0.a1
pyrus_communis	pycom06g13720 pycom06g13730 pycom14g13510 pycom72g00010
rosa_chinensis	RchiOBHm_Chr7g0190781
rosa_laevigata	RLG00000004496 RLG00000004499
rosa_multiflora	Rmu_co8422347.1_g000001 Rmu_sc0002819.1_g000007
rosa_roxburghii	Rroxscaffold_3G00264320
rosa_rugosa	Rorug06G0506700 Rorug06G0506700 Rorug06G0506700 Rorug06G0506800
rosa_samantha	Rh7AG113500 Rh7BG116000 Rh7CG118600 Rh7DG117500
rosa_wichuraiana	Rw7G009910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	265, 814
AccB7I	CCANNNNNTGG	1 cut(s)	100
AccII	CGCG	1 cut(s)	300
AciI	CCGC	3 cut(s)	298, 872, 994
AclWI	GGATC	4 cut(s)	58, 85, 377, 390
AcsI	RAATTY	1 cut(s)	42
AcuI	CTGAAG	2 cut(s)	56, 525
AcyI	GRCGYC	1 cut(s)	1050
AfiI	CCNNNNNNNGG	4 cut(s)	100, 1012, 1104, 1223
AgeI	ACCGGT	1 cut(s)	1012
AgsI	TTSAA	6 cut(s)	10, 365, 419, 578, 703, 1208
AjnI	CCWGG	3 cut(s)	66, 546, 691
Alw21I	GWGCWC	1 cut(s)	262
Alw26I	GTCTC	2 cut(s)	283, 984
AlwI	GGATC	4 cut(s)	58, 85, 377, 390
Ama87I	CYCGRG	1 cut(s)	266
AoxI	GGCC	2 cut(s)	465, 753
ApeKI	GCWGC	4 cut(s)	473, 497, 500, 921
ApoI	RAATTY	1 cut(s)	42
AsiGI	ACCGGT	1 cut(s)	1012
AspLEI	GCGC	3 cut(s)	218, 871, 1110
AspS9I	GGNCC	1 cut(s)	906
AsuC2I	CCSGG	1 cut(s)	112
AsuHPI	GGTGA	5 cut(s)	169, 383, 641, 1013, 1087
AvaI	CYCGRG	1 cut(s)	266
AvaII	GGWCC	1 cut(s)	906
BamHI	GGATCC	1 cut(s)	382
BauI	CACGAG	2 cut(s)	232, 1176
Bbv12I	GWGCWC	1 cut(s)	262
BbvI	GCAGC	4 cut(s)	460, 484, 512, 908
BccI	CCATC	1 cut(s)	556
BcgI	CGANNNNNNTGC	2 cut(s)	831, 865
BciT130I	CCWGG	3 cut(s)	68, 548, 693
BclI	TGATCA	2 cut(s)	637, 1042
BcnI	CCSGG	1 cut(s)	112
BcoDI	GTCTC	2 cut(s)	283, 984
BfaI	CTAG	4 cut(s)	510, 527, 611, 914
BfmI	CTRYAG	3 cut(s)	474, 498, 707
BfoI	RGCGCY	1 cut(s)	1111
BfuAI	ACCTGC	2 cut(s)	265, 814
BglII	AGATCT	1 cut(s)	607
BisI	GCNGC	6 cut(s)	474, 498, 501, 872, 922, 994
BlsI	GCNGC	6 cut(s)	475, 499, 502, 873, 923, 995
Bme1390I	CCNGG	4 cut(s)	68, 112, 548, 693
Bme18I	GGWCC	1 cut(s)	906
BmeT110I	CYCGRG	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	906
BmiI	GGNNCC	2 cut(s)	384, 908
BmrFI	CCNGG	4 cut(s)	68, 112, 548, 693
BmsI	GCATC	4 cut(s)	227, 851, 970, 1147
Bpu10I	CCTNAGC	1 cut(s)	672
BpuMI	CCSGG	1 cut(s)	112
BsaHI	GRCGYC	1 cut(s)	1050
BsaI	GGTCTC	1 cut(s)	283
BsaJI	CCNNGG	2 cut(s)	462, 1182
BsaWI	WCCGGW	1 cut(s)	1012
BsaXI	ACNNNNNCTCC	1 cut(s)	1219
Bsc4I	CCNNNNNNNGG	4 cut(s)	100, 1012, 1104, 1223
Bse118I	RCCGGY	1 cut(s)	1012
Bse3DI	GCAATG	3 cut(s)	93, 551, 1025
BseBI	CCWGG	3 cut(s)	68, 548, 693
BseDI	CCNNGG	2 cut(s)	462, 1182
BseGI	GGATG	3 cut(s)	784, 842, 961
BseLI	CCNNNNNNNGG	4 cut(s)	100, 1012, 1104, 1223
BseMI	GCAATG	3 cut(s)	93, 551, 1025
BseMII	CTCAG	1 cut(s)	663
BseRI	GAGGAG	2 cut(s)	166, 266
BseXI	GCAGC	4 cut(s)	460, 484, 512, 908
Bsh1236I	CGCG	1 cut(s)	300
Bsh1285I	CGRYCG	1 cut(s)	116
BshFI	GGCC	2 cut(s)	467, 755
BshTI	ACCGGT	1 cut(s)	1012
BsiEI	CGRYCG	1 cut(s)	116
BsiHKAI	GWGCWC	1 cut(s)	262
BsiHKCI	CYCGRG	1 cut(s)	266
BsiSI	CCGG	2 cut(s)	112, 1013
BslFI	GGGAC	2 cut(s)	94, 1155
BslI	CCNNNNNNNGG	4 cut(s)	100, 1012, 1104, 1223
BsmAI	GTCTC	2 cut(s)	283, 984
BsmFI	GGGAC	2 cut(s)	94, 1155
BsmI	GAATGC	1 cut(s)	676
BsnI	GGCC	2 cut(s)	467, 755
Bso31I	GGTCTC	1 cut(s)	283
BsoBI	CYCGRG	1 cut(s)	266
Bsp1286I	GDGCHC	1 cut(s)	262
Bsp143I	GATC	6 cut(s)	63, 90, 382, 607, 637, 1042
Bsp19I	CCATGG	1 cut(s)	1182
BspACI	CCGC	3 cut(s)	298, 872, 994
BspANI	GGCC	2 cut(s)	467, 755
BspCNI	CTCAG	1 cut(s)	664
BspFNI	CGCG	1 cut(s)	300
BspHI	TCATGA	1 cut(s)	747
BspLI	GGNNCC	2 cut(s)	384, 908
BspMAI	CTGCAG	3 cut(s)	478, 502, 711
BspMI	ACCTGC	2 cut(s)	265, 814
BspPI	GGATC	4 cut(s)	58, 85, 377, 390
BspTNI	GGTCTC	1 cut(s)	283
BsrDI	GCAATG	3 cut(s)	93, 551, 1025
BsrFI	RCCGGY	1 cut(s)	1012
BssAI	RCCGGY	1 cut(s)	1012
BssECI	CCNNGG	2 cut(s)	462, 1182
BssMI	GATC	6 cut(s)	63, 90, 382, 607, 637, 1042
BssNI	GRCGYC	1 cut(s)	1050
BssSI	CACGAG	2 cut(s)	232, 1176
BssT1I	CCWWGG	1 cut(s)	1182
Bst2BI	CACGAG	2 cut(s)	232, 1176
Bst2UI	CCWGG	3 cut(s)	68, 548, 693
Bst4CI	ACNGT	2 cut(s)	574, 593
Bst6I	CTCTTC	1 cut(s)	49
BstACI	GRCGYC	1 cut(s)	1050
BstAPI	GCANNNNNTGC	1 cut(s)	1016
BstC8I	GCNNGC	4 cut(s)	455, 459, 544, 889
BstDEI	CTNAG	2 cut(s)	672, 727
BstDSI	CCRYGG	1 cut(s)	1182
BstEII	GGTNACC	1 cut(s)	1001
BstF5I	GGATG	3 cut(s)	784, 842, 961
BstFNI	CGCG	1 cut(s)	300
BstH2I	RGCGCY	1 cut(s)	1111
BstHHI	GCGC	3 cut(s)	218, 871, 1110
BstKTI	GATC	6 cut(s)	66, 93, 385, 610, 640, 1045
BstMAI	GTCTC	2 cut(s)	283, 984
BstMBI	GATC	6 cut(s)	63, 90, 382, 607, 637, 1042
BstMCI	CGRYCG	1 cut(s)	116
BstMWI	GCNNNNNNNGC	5 cut(s)	473, 482, 506, 548, 1016
BstNI	CCWGG	3 cut(s)	68, 548, 693
BstPI	GGTNACC	1 cut(s)	1001
BstSCI	CCNGG	4 cut(s)	66, 110, 546, 691
BstSFI	CTRYAG	3 cut(s)	474, 498, 707
BstUI	CGCG	1 cut(s)	300
BstV1I	GCAGC	4 cut(s)	460, 484, 512, 908
BstX2I	RGATCY	2 cut(s)	382, 607
BstYI	RGATCY	2 cut(s)	382, 607
BsuRI	GGCC	2 cut(s)	467, 755
BtgI	CCRYGG	1 cut(s)	1182
BtsCI	GGATG	3 cut(s)	784, 842, 961
BveI	ACCTGC	2 cut(s)	265, 814
Cac8I	GCNNGC	4 cut(s)	455, 459, 544, 889
CciI	TCATGA	1 cut(s)	747
CfoI	GCGC	3 cut(s)	218, 871, 1110
Cfr10I	RCCGGY	1 cut(s)	1012
Cfr13I	GGNCC	1 cut(s)	906
CseI	GACGC	1 cut(s)	1039
CspAI	ACCGGT	1 cut(s)	1012
CviAII	CATG	8 cut(s)	178, 601, 748, 974, 1007, 1046, 1084, 1183
DdeI	CTNAG	2 cut(s)	672, 727
DpnI	GATC	6 cut(s)	65, 92, 384, 609, 639, 1044
DpnII	GATC	6 cut(s)	63, 90, 382, 607, 637, 1042
DraI	TTTAAA	1 cut(s)	340
Eam1104I	CTCTTC	1 cut(s)	49
EarI	CTCTTC	1 cut(s)	49
Eco130I	CCWWGG	1 cut(s)	1182
Eco31I	GGTCTC	1 cut(s)	283
Eco47I	GGWCC	1 cut(s)	906
Eco57I	CTGAAG	2 cut(s)	56, 525
Eco88I	CYCGRG	1 cut(s)	266
Eco91I	GGTNACC	1 cut(s)	1001
EcoO65I	GGTNACC	1 cut(s)	1001
EcoRII	CCWGG	3 cut(s)	66, 546, 691
EcoT14I	CCWWGG	1 cut(s)	1182
ErhI	CCWWGG	1 cut(s)	1182
FaeI	CATG	8 cut(s)	181, 604, 751, 977, 1010, 1049, 1087, 1186
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FaqI	GGGAC	2 cut(s)	94, 1155
FatI	CATG	8 cut(s)	177, 600, 747, 973, 1006, 1045, 1083, 1182
FbaI	TGATCA	2 cut(s)	637, 1042
Fnu4HI	GCNGC	6 cut(s)	474, 498, 501, 872, 922, 994
FokI	GGATG	3 cut(s)	791, 829, 948
Fsp4HI	GCNGC	6 cut(s)	474, 498, 501, 872, 922, 994
FspBI	CTAG	4 cut(s)	510, 527, 611, 914
GlaI	GCGC	3 cut(s)	217, 870, 1109
GluI	GCNGC	6 cut(s)	474, 498, 501, 872, 922, 994
HaeII	RGCGCY	1 cut(s)	1111
HaeIII	GGCC	2 cut(s)	467, 755
HapII	CCGG	2 cut(s)	112, 1013
HgaI	GACGC	1 cut(s)	1039
HhaI	GCGC	3 cut(s)	218, 871, 1110
Hin1I	GRCGYC	1 cut(s)	1050
Hin1II	CATG	8 cut(s)	181, 604, 751, 977, 1010, 1049, 1087, 1186
Hin6I	GCGC	3 cut(s)	216, 869, 1108
HinP1I	GCGC	3 cut(s)	216, 869, 1108
HindIII	AAGCTT	3 cut(s)	25, 885, 1209
HinfI	GANTC	2 cut(s)	316, 1143
HpaII	CCGG	2 cut(s)	112, 1013
HphI	GGTGA	5 cut(s)	169, 383, 641, 1013, 1087
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	3 cut(s)	36, 48, 78
Hpy188III	TCNNGA	6 cut(s)	386, 611, 748, 914, 1151, 1199
Hpy8I	GTNNAC	1 cut(s)	160
HpyAV	CCTTC	7 cut(s)	340, 346, 428, 745, 886, 920, 947
HpyCH4III	ACNGT	2 cut(s)	574, 593
HpyF10VI	GCNNNNNNNGC	5 cut(s)	473, 482, 506, 548, 1016
HpyF3I	CTNAG	2 cut(s)	672, 727
Hsp92I	GRCGYC	1 cut(s)	1050
Hsp92II	CATG	8 cut(s)	181, 604, 751, 977, 1010, 1049, 1087, 1186
HspAI	GCGC	3 cut(s)	216, 869, 1108
Ksp22I	TGATCA	2 cut(s)	637, 1042
Kzo9I	GATC	6 cut(s)	63, 90, 382, 607, 637, 1042
LmnI	GCTCC	2 cut(s)	265, 939
Lsp1109I	GCAGC	4 cut(s)	460, 484, 512, 908
LweI	GCATC	4 cut(s)	227, 851, 970, 1147
MaeI	CTAG	4 cut(s)	510, 527, 611, 914
MaeIII	GTNAC	3 cut(s)	239, 629, 1001
MalI	GATC	6 cut(s)	65, 92, 384, 609, 639, 1044
MboI	GATC	6 cut(s)	63, 90, 382, 607, 637, 1042
MboII	GAAGA	4 cut(s)	66, 491, 1084, 1166
MflI	RGATCY	2 cut(s)	382, 607
MhlI	GDGCHC	1 cut(s)	262
MluCI	AATT	9 cut(s)	42, 80, 140, 208, 399, 803, 949, 1034, 1113
MlyI	GAGTC	1 cut(s)	1137
MmeI	TCCRAC	1 cut(s)	360
MseI	TTAA	4 cut(s)	207, 339, 621, 987
MspA1I	CMGCKG	1 cut(s)	503
MspI	CCGG	2 cut(s)	112, 1013
MspR9I	CCNGG	4 cut(s)	68, 112, 548, 693
Mva1269I	GAATGC	1 cut(s)	676
MvaI	CCWGG	3 cut(s)	68, 548, 693
MvnI	CGCG	1 cut(s)	300
MwoI	GCNNNNNNNGC	5 cut(s)	473, 482, 506, 548, 1016
NciI	CCSGG	1 cut(s)	112
NcoI	CCATGG	1 cut(s)	1182
NdeII	GATC	6 cut(s)	63, 90, 382, 607, 637, 1042
NlaIII	CATG	8 cut(s)	181, 604, 751, 977, 1010, 1049, 1087, 1186
NlaIV	GGNNCC	2 cut(s)	384, 908
NmeAIII	GCCGAG	1 cut(s)	487
NmuCI	GTSAC	3 cut(s)	239, 629, 1001
PagI	TCATGA	1 cut(s)	747
PctI	GAATGC	1 cut(s)	676
PfeI	GAWTC	1 cut(s)	316
PflMI	CCANNNNNTGG	1 cut(s)	100
PinAI	ACCGGT	1 cut(s)	1012
PkrI	GCNGC	6 cut(s)	475, 499, 502, 873, 923, 995
PleI	GAGTC	1 cut(s)	1137
PpsI	GAGTC	1 cut(s)	1137
Psp6I	CCWGG	3 cut(s)	66, 546, 691
PspEI	GGTNACC	1 cut(s)	1001
PspGI	CCWGG	3 cut(s)	66, 546, 691
PspN4I	GGNNCC	2 cut(s)	384, 908
PspPI	GGNCC	1 cut(s)	906
PstI	CTGCAG	3 cut(s)	478, 502, 711
PsuI	RGATCY	2 cut(s)	382, 607
PvuII	CAGCTG	1 cut(s)	503
SaqAI	TTAA	4 cut(s)	207, 339, 621, 987
SatI	GCNGC	6 cut(s)	474, 498, 501, 872, 922, 994
Sau3AI	GATC	6 cut(s)	63, 90, 382, 607, 637, 1042
Sau96I	GGNCC	1 cut(s)	906
SchI	GAGTC	1 cut(s)	1137
ScrFI	CCNGG	4 cut(s)	68, 112, 548, 693
SduI	GDGCHC	1 cut(s)	262
SfaNI	GCATC	4 cut(s)	227, 851, 970, 1147
SfcI	CTRYAG	3 cut(s)	474, 498, 707
SinI	GGWCC	1 cut(s)	906
Sse9I	AATT	9 cut(s)	42, 80, 140, 208, 399, 803, 949, 1034, 1113
SsiI	CCGC	3 cut(s)	298, 872, 994
SspI	AATATT	1 cut(s)	336
SspMI	CTAG	4 cut(s)	510, 527, 611, 914
StyD4I	CCNGG	4 cut(s)	66, 110, 546, 691
StyI	CCWWGG	1 cut(s)	1182
TaaI	ACNGT	2 cut(s)	574, 593
TaqI	TCGA	3 cut(s)	116, 440, 657
TasI	AATT	9 cut(s)	42, 80, 140, 208, 399, 803, 949, 1034, 1113
TauI	GCSGC	2 cut(s)	874, 996
TfiI	GAWTC	1 cut(s)	316
Tru1I	TTAA	4 cut(s)	207, 339, 621, 987
Tru9I	TTAA	4 cut(s)	207, 339, 621, 987
TseFI	GTSAC	3 cut(s)	239, 629, 1001
TseI	GCWGC	4 cut(s)	473, 497, 500, 921
Tsp45I	GTSAC	3 cut(s)	239, 629, 1001
TspDTI	ATGAA	5 cut(s)	194, 589, 736, 764, 962
TspGWI	ACGGA	1 cut(s)	135
Van91I	CCANNNNNTGG	1 cut(s)	100
VpaK11BI	GGWCC	1 cut(s)	906
XapI	RAATTY	1 cut(s)	42
XbaI	TCTAGA	2 cut(s)	610, 913
XspI	CTAG	4 cut(s)	510, 527, 611, 914

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.