Transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G63320 AT5G63320 AT5G63320 |
| fragaria_vesca | FvH4_2g09340 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g15310 FvH4_7g03961 |
| malus_domestica | MD06G1147900.v1.1 MD14G1162200.v1.1 |
| prunus_persica | Prupe.5G154800_v2.0.a1 |
| pyrus_communis | pycom06g13720 pycom06g13730 pycom14g13510 pycom72g00010 |
| rosa_chinensis | RchiOBHm_Chr7g0190781 |
| rosa_laevigata | RLG00000004496 RLG00000004499 |
| rosa_multiflora | Rmu_co8422347.1_g000001 Rmu_sc0002819.1_g000007 |
| rosa_roxburghii | Rroxscaffold_3G00264320 |
| rosa_rugosa | Rorug06G0506700 Rorug06G0506700 Rorug06G0506700 Rorug06G0506800 |
| rosa_samantha | Rh7AG113500 Rh7BG116000 Rh7CG118600 Rh7DG117500 |
| rosa_wichuraiana | Rw7G009910 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 4, 271, 536 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1279 |
| AccII | CGCG | 1 cut(s) | 981 |
| AciI | CCGC | 8 cut(s) | 361, 529, 541, 646, 817, 1822, 1930, 2273 |
| AclWI | GGATC | 6 cut(s) | 358, 371, 1457, 1713, 1883, 1896 |
| AcoI | YGGCCR | 2 cut(s) | 526, 876 |
| AcsI | RAATTY | 5 cut(s) | 378, 488, 607, 1630, 2158 |
| AcuI | CTGAAG | 4 cut(s) | 186, 353, 1080, 2019 |
| AfaI | GTAC | 3 cut(s) | 89, 1033, 1621 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1279, 1373, 1861 |
| AflIII | ACRYGT | 1 cut(s) | 2149 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1717 |
| AhlI | ACTAGT | 1 cut(s) | 1046 |
| AjiI | CACGTC | 1 cut(s) | 2057 |
| AjnI | CCWGG | 4 cut(s) | 523, 853, 1384, 2204 |
| Alw21I | GWGCWC | 3 cut(s) | 351, 1771, 2320 |
| Alw26I | GTCTC | 4 cut(s) | 134, 875, 1792, 2165 |
| AlwI | GGATC | 6 cut(s) | 358, 371, 1457, 1713, 1883, 1896 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2009 |
| Ama87I | CYCGRG | 1 cut(s) | 1854 |
| AoxI | GGCC | 7 cut(s) | 455, 526, 563, 643, 876, 1695, 1965 |
| ApeKI | GCWGC | 8 cut(s) | 806, 998, 1811, 1973, 2009, 2012, 2051, 2375 |
| ApoI | RAATTY | 5 cut(s) | 378, 488, 607, 1630, 2158 |
| AspLEI | GCGC | 2 cut(s) | 220, 499 |
| AspS9I | GGNCC | 3 cut(s) | 456, 563, 1696 |
| AsuC2I | CCSGG | 1 cut(s) | 1717 |
| AsuHPI | GGTGA | 2 cut(s) | 709, 1889 |
| AvaI | CYCGRG | 1 cut(s) | 1854 |
| BaeGI | GKGCMC | 2 cut(s) | 541, 755 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1035, 1068 |
| BamHI | GGATCC | 2 cut(s) | 363, 1888 |
| BanI | GGYRCC | 3 cut(s) | 4, 271, 536 |
| BanII | GRGCYC | 2 cut(s) | 351, 520 |
| Bbv12I | GWGCWC | 3 cut(s) | 351, 1771, 2320 |
| BbvCI | CCTCAGC | 1 cut(s) | 1962 |
| BbvI | GCAGC | 8 cut(s) | 793, 985, 1823, 1960, 1996, 2024, 2038, 2387 |
| BceAI | ACGGC | 2 cut(s) | 274, 2390 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 128, 162 |
| BciT130I | CCWGG | 4 cut(s) | 525, 855, 1386, 2206 |
| BcnI | CCSGG | 1 cut(s) | 1717 |
| BcoDI | GTCTC | 4 cut(s) | 134, 875, 1792, 2165 |
| BcuI | ACTAGT | 1 cut(s) | 1046 |
| BfaI | CTAG | 6 cut(s) | 641, 1047, 1868, 2039, 2120, 2175 |
| BfmI | CTRYAG | 2 cut(s) | 1974, 2010 |
| BglII | AGATCT | 1 cut(s) | 2116 |
| BmcAI | AGTACT | 1 cut(s) | 89 |
| Bme1390I | CCNGG | 5 cut(s) | 525, 855, 1386, 1717, 2206 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1717 |
| BmeT110I | CYCGRG | 1 cut(s) | 1854 |
| BmgBI | CACGTC | 1 cut(s) | 2057 |
| BmgT120I | GGNCC | 3 cut(s) | 456, 563, 1696 |
| BmiI | GGNNCC | 9 cut(s) | 6, 273, 365, 458, 519, 538, 591, 1698, 1890 |
| BmrFI | CCNGG | 5 cut(s) | 525, 855, 1386, 1717, 2206 |
| BmsI | GCATC | 5 cut(s) | 745, 1411, 1564, 2374, 2392 |
| BpmI | CTGGAG | 6 cut(s) | 576, 1301, 1428, 1489, 1644, 2304 |
| Bpu10I | CCTNAGC | 2 cut(s) | 172, 1962 |
| BpuEI | CTTGAG | 1 cut(s) | 1480 |
| BpuMI | CCSGG | 1 cut(s) | 1717 |
| BsaAI | YACGTR | 1 cut(s) | 83 |
| BsaBI | GATNNNNATC | 2 cut(s) | 471, 1272 |
| BsaI | GGTCTC | 1 cut(s) | 134 |
| BsaJI | CCNNGG | 2 cut(s) | 1107, 1384 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 424, 454 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1279, 1373, 1861 |
| Bse118I | RCCGGY | 2 cut(s) | 126, 583 |
| Bse1I | ACTGG | 8 cut(s) | 34, 420, 935, 1445, 1506, 1530, 1627, 1707 |
| Bse3DI | GCAATG | 5 cut(s) | 144, 538, 1384, 1681, 2063 |
| Bse8I | GATNNNNATC | 2 cut(s) | 471, 1272 |
| BseBI | CCWGG | 4 cut(s) | 525, 855, 1386, 2206 |
| BseDI | CCNNGG | 2 cut(s) | 1107, 1384 |
| BseGI | GGATG | 7 cut(s) | 256, 306, 416, 736, 1273, 1526, 2281 |
| BseJI | GATNNNNATC | 2 cut(s) | 471, 1272 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1279, 1373, 1861 |
| BseMI | GCAATG | 5 cut(s) | 144, 538, 1384, 1681, 2063 |
| BseMII | CTCAG | 4 cut(s) | 186, 1767, 1953, 2204 |
| BseNI | ACTGG | 8 cut(s) | 34, 420, 935, 1445, 1506, 1530, 1627, 1707 |
| BseRI | GAGGAG | 4 cut(s) | 510, 1103, 1754, 2183 |
| BseSI | GKGCMC | 2 cut(s) | 541, 755 |
| BseXI | GCAGC | 8 cut(s) | 793, 985, 1823, 1960, 1996, 2024, 2038, 2387 |
| BseYI | CCCAGC | 1 cut(s) | 2209 |
| BsgI | GTGCAG | 4 cut(s) | 971, 984, 1830, 2037 |
| Bsh1236I | CGCG | 1 cut(s) | 981 |
| BshFI | GGCC | 7 cut(s) | 457, 528, 565, 645, 878, 1697, 1967 |
| BshNI | GGYRCC | 3 cut(s) | 4, 271, 536 |
| BsiHKAI | GWGCWC | 3 cut(s) | 351, 1771, 2320 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1854 |
| BsiSI | CCGG | 3 cut(s) | 127, 584, 1716 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1279, 1373, 1861 |
| BsmAI | GTCTC | 4 cut(s) | 134, 875, 1792, 2165 |
| BsmBI | CGTCTC | 1 cut(s) | 875 |
| BsmI | GAATGC | 1 cut(s) | 2185 |
| BsnI | GGCC | 7 cut(s) | 457, 528, 565, 645, 878, 1697, 1967 |
| Bso31I | GGTCTC | 1 cut(s) | 134 |
| BsoBI | CYCGRG | 1 cut(s) | 1854 |
| Bsp1286I | GDGCHC | 6 cut(s) | 351, 520, 541, 755, 1771, 2320 |
| Bsp143I | GATC | 7 cut(s) | 363, 479, 1206, 1462, 1705, 1888, 2116 |
| Bsp19I | CCATGG | 1 cut(s) | 1107 |
| BspACI | CCGC | 8 cut(s) | 361, 529, 541, 646, 817, 1822, 1930, 2273 |
| BspANI | GGCC | 7 cut(s) | 457, 528, 565, 645, 878, 1697, 1967 |
| BspCNI | CTCAG | 4 cut(s) | 185, 1768, 1954, 2203 |
| BspFNI | CGCG | 1 cut(s) | 981 |
| BspHI | TCATGA | 1 cut(s) | 2265 |
| BspLI | GGNNCC | 9 cut(s) | 6, 273, 365, 458, 519, 538, 591, 1698, 1890 |
| BspMAI | CTGCAG | 2 cut(s) | 1978, 2014 |
| BspPI | GGATC | 6 cut(s) | 358, 371, 1457, 1713, 1883, 1896 |
| BspQI | GCTCTTC | 3 cut(s) | 755, 981, 1528 |
| BspT107I | GGYRCC | 3 cut(s) | 4, 271, 536 |
| BspTNI | GGTCTC | 1 cut(s) | 134 |
| BsrDI | GCAATG | 5 cut(s) | 144, 538, 1384, 1681, 2063 |
| BsrFI | RCCGGY | 2 cut(s) | 126, 583 |
| BsrI | ACTGG | 8 cut(s) | 34, 420, 935, 1445, 1506, 1530, 1627, 1707 |
| BssAI | RCCGGY | 2 cut(s) | 126, 583 |
| BssECI | CCNNGG | 2 cut(s) | 1107, 1384 |
| BssMI | GATC | 7 cut(s) | 363, 479, 1206, 1462, 1705, 1888, 2116 |
| BssT1I | CCWWGG | 1 cut(s) | 1107 |
| Bst2UI | CCWGG | 4 cut(s) | 525, 855, 1386, 2206 |
| Bst4CI | ACNGT | 9 cut(s) | 13, 309, 388, 727, 757, 991, 1481, 1808, 2086 |
| Bst6I | CTCTTC | 5 cut(s) | 755, 981, 1528, 1935, 1974 |
| BstAPI | GCANNNNNTGC | 5 cut(s) | 286, 958, 2009, 2384, 2402 |
| BstBAI | YACGTR | 1 cut(s) | 83 |
| BstC8I | GCNNGC | 5 cut(s) | 132, 541, 632, 1299, 2202 |
| BstDEI | CTNAG | 6 cut(s) | 172, 507, 1776, 1962, 2190, 2245 |
| BstDSI | CCRYGG | 1 cut(s) | 1107 |
| BstF5I | GGATG | 7 cut(s) | 256, 306, 416, 736, 1273, 1526, 2281 |
| BstFNI | CGCG | 1 cut(s) | 981 |
| BstHHI | GCGC | 2 cut(s) | 220, 499 |
| BstKTI | GATC | 7 cut(s) | 366, 482, 1209, 1465, 1708, 1891, 2119 |
| BstMAI | GTCTC | 4 cut(s) | 134, 875, 1792, 2165 |
| BstMBI | GATC | 7 cut(s) | 363, 479, 1206, 1462, 1705, 1888, 2116 |
| BstNI | CCWGG | 4 cut(s) | 525, 855, 1386, 2206 |
| BstNSI | RCATGY | 4 cut(s) | 134, 559, 1078, 2153 |
| BstSCI | CCNGG | 5 cut(s) | 523, 853, 1384, 1715, 2204 |
| BstSFI | CTRYAG | 2 cut(s) | 1974, 2010 |
| BstSLI | GKGCMC | 2 cut(s) | 541, 755 |
| BstUI | CGCG | 1 cut(s) | 981 |
| BstV1I | GCAGC | 8 cut(s) | 793, 985, 1823, 1960, 1996, 2024, 2038, 2387 |
| BstX2I | RGATCY | 4 cut(s) | 363, 1462, 1888, 2116 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1114 |
| BstYI | RGATCY | 4 cut(s) | 363, 1462, 1888, 2116 |
| BsuRI | GGCC | 7 cut(s) | 457, 528, 565, 645, 878, 1697, 1967 |
| BtgI | CCRYGG | 1 cut(s) | 1107 |
| BtgZI | GCGATG | 1 cut(s) | 1404 |
| BtrI | CACGTC | 1 cut(s) | 2057 |
| BtsCI | GGATG | 7 cut(s) | 256, 306, 416, 736, 1273, 1526, 2281 |
| BtsI | GCAGTG | 1 cut(s) | 445 |
| BtsIMutI | CAGTG | 7 cut(s) | 27, 427, 445, 753, 1452, 1537, 1700 |
| Cac8I | GCNNGC | 5 cut(s) | 132, 541, 632, 1299, 2202 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2009 |
| CciI | TCATGA | 1 cut(s) | 2265 |
| CfoI | GCGC | 2 cut(s) | 220, 499 |
| Cfr10I | RCCGGY | 2 cut(s) | 126, 583 |
| Cfr13I | GGNCC | 3 cut(s) | 456, 563, 1696 |
| CseI | GACGC | 1 cut(s) | 1139 |
| Csp6I | GTAC | 3 cut(s) | 88, 1032, 1620 |
| CviAII | CATG | 9 cut(s) | 131, 213, 556, 789, 1075, 1108, 1368, 2150, 2266 |
| CviQI | GTAC | 3 cut(s) | 88, 1032, 1620 |
| DdeI | CTNAG | 6 cut(s) | 172, 507, 1776, 1962, 2190, 2245 |
| DpnI | GATC | 7 cut(s) | 365, 481, 1208, 1464, 1707, 1890, 2118 |
| DpnII | GATC | 7 cut(s) | 363, 479, 1206, 1462, 1705, 1888, 2116 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1717 |
| EaeI | YGGCCR | 2 cut(s) | 526, 876 |
| Eam1104I | CTCTTC | 5 cut(s) | 755, 981, 1528, 1935, 1974 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1717 |
| EarI | CTCTTC | 5 cut(s) | 755, 981, 1528, 1935, 1974 |
| EciI | GGCGGA | 1 cut(s) | 2288 |
| Ecl136II | GAGCTC | 1 cut(s) | 349 |
| Eco130I | CCWWGG | 1 cut(s) | 1107 |
| Eco24I | GRGCYC | 2 cut(s) | 351, 520 |
| Eco31I | GGTCTC | 1 cut(s) | 134 |
| Eco53kI | GAGCTC | 1 cut(s) | 349 |
| Eco57I | CTGAAG | 4 cut(s) | 186, 353, 1080, 2019 |
| Eco88I | CYCGRG | 1 cut(s) | 1854 |
| EcoICRI | GAGCTC | 1 cut(s) | 349 |
| EcoO109I | RGGNCCY | 1 cut(s) | 456 |
| EcoRII | CCWGG | 4 cut(s) | 523, 853, 1384, 2204 |
| EcoT14I | CCWWGG | 1 cut(s) | 1107 |
| EcoT22I | ATGCAT | 1 cut(s) | 236 |
| EcoT38I | GRGCYC | 2 cut(s) | 351, 520 |
| ErhI | CCWWGG | 1 cut(s) | 1107 |
| Esp3I | CGTCTC | 1 cut(s) | 875 |
| FaeI | CATG | 9 cut(s) | 134, 216, 559, 792, 1078, 1111, 1371, 2153, 2269 |
| FatI | CATG | 9 cut(s) | 130, 212, 555, 788, 1074, 1107, 1367, 2149, 2265 |
| FauI | CCCGC | 1 cut(s) | 548 |
| FokI | GGATG | 7 cut(s) | 263, 313, 403, 723, 1280, 1513, 2288 |
| FriOI | GRGCYC | 2 cut(s) | 351, 520 |
| FspBI | CTAG | 6 cut(s) | 641, 1047, 1868, 2039, 2120, 2175 |
| GlaI | GCGC | 2 cut(s) | 219, 498 |
| GsaI | CCCAGC | 1 cut(s) | 2213 |
| GsuI | CTGGAG | 6 cut(s) | 576, 1301, 1428, 1489, 1644, 2304 |
| HaeIII | GGCC | 7 cut(s) | 457, 528, 565, 645, 878, 1697, 1967 |
| HapII | CCGG | 3 cut(s) | 127, 584, 1716 |
| HgaI | GACGC | 1 cut(s) | 1139 |
| HhaI | GCGC | 2 cut(s) | 220, 499 |
| Hin1II | CATG | 9 cut(s) | 134, 216, 559, 792, 1078, 1111, 1371, 2153, 2269 |
| Hin6I | GCGC | 2 cut(s) | 218, 497 |
| HinP1I | GCGC | 2 cut(s) | 218, 497 |
| HincII | GTYRAC | 3 cut(s) | 184, 1080, 1216 |
| HindII | GTYRAC | 3 cut(s) | 184, 1080, 1216 |
| HindIII | AAGCTT | 4 cut(s) | 929, 1224, 1259, 1435 |
| HpaII | CCGG | 3 cut(s) | 127, 584, 1716 |
| HphI | GGTGA | 2 cut(s) | 709, 1889 |
| Hpy166II | GTNNAC | 6 cut(s) | 184, 1034, 1080, 1216, 1748, 1955 |
| Hpy188III | TCNNGA | 9 cut(s) | 119, 139, 174, 1341, 1709, 1892, 2120, 2266, 2321 |
| Hpy8I | GTNNAC | 6 cut(s) | 184, 1034, 1080, 1216, 1748, 1955 |
| HpyAV | CCTTC | 8 cut(s) | 313, 377, 972, 1087, 1178, 1987, 2263, 2423 |
| HpyCH4III | ACNGT | 9 cut(s) | 13, 309, 388, 727, 757, 991, 1481, 1808, 2086 |
| HpyCH4IV | ACGT | 3 cut(s) | 82, 1951, 2056 |
| HpyF3I | CTNAG | 6 cut(s) | 172, 507, 1776, 1962, 2190, 2245 |
| HpySE526I | ACGT | 3 cut(s) | 82, 1951, 2056 |
| Hsp92II | CATG | 9 cut(s) | 134, 216, 559, 792, 1078, 1111, 1371, 2153, 2269 |
| HspAI | GCGC | 2 cut(s) | 218, 497 |
| Kzo9I | GATC | 7 cut(s) | 363, 479, 1206, 1462, 1705, 1888, 2116 |
| LguI | GCTCTTC | 3 cut(s) | 755, 981, 1528 |
| LmnI | GCTCC | 8 cut(s) | 346, 523, 595, 1429, 1508, 1625, 1774, 2323 |
| Lsp1109I | GCAGC | 8 cut(s) | 793, 985, 1823, 1960, 1996, 2024, 2038, 2387 |
| LweI | GCATC | 5 cut(s) | 745, 1411, 1564, 2374, 2392 |
| MaeI | CTAG | 6 cut(s) | 641, 1047, 1868, 2039, 2120, 2175 |
| MaeII | ACGT | 3 cut(s) | 82, 1951, 2056 |
| MaeIII | GTNAC | 7 cut(s) | 78, 294, 303, 654, 937, 991, 1532 |
| MalI | GATC | 7 cut(s) | 365, 481, 1208, 1464, 1707, 1890, 2118 |
| MboI | GATC | 7 cut(s) | 363, 479, 1206, 1462, 1705, 1888, 2116 |
| MflI | RGATCY | 4 cut(s) | 363, 1462, 1888, 2116 |
| MhlI | GDGCHC | 6 cut(s) | 351, 520, 541, 755, 1771, 2320 |
| MlyI | GAGTC | 4 cut(s) | 1346, 1529, 1535, 1706 |
| MmeI | TCCRAC | 2 cut(s) | 1095, 1563 |
| Mph1103I | ATGCAT | 1 cut(s) | 236 |
| MseI | TTAA | 3 cut(s) | 732, 1155, 1332 |
| MslI | CAYNNNNRTG | 1 cut(s) | 191 |
| MspI | CCGG | 3 cut(s) | 127, 584, 1716 |
| MspR9I | CCNGG | 5 cut(s) | 525, 855, 1386, 1717, 2206 |
| Mva1269I | GAATGC | 1 cut(s) | 2185 |
| MvaI | CCWGG | 4 cut(s) | 525, 855, 1386, 2206 |
| MvnI | CGCG | 1 cut(s) | 981 |
| NciI | CCSGG | 1 cut(s) | 1717 |
| NcoI | CCATGG | 1 cut(s) | 1107 |
| NdeII | GATC | 7 cut(s) | 363, 479, 1206, 1462, 1705, 1888, 2116 |
| NlaIII | CATG | 9 cut(s) | 134, 216, 559, 792, 1078, 1111, 1371, 2153, 2269 |
| NlaIV | GGNNCC | 9 cut(s) | 6, 273, 365, 458, 519, 538, 591, 1698, 1890 |
| NmeAIII | GCCGAG | 1 cut(s) | 904 |
| NmuCI | GTSAC | 6 cut(s) | 78, 294, 303, 654, 991, 1532 |
| NsiI | ATGCAT | 1 cut(s) | 236 |
| NspI | RCATGY | 4 cut(s) | 134, 559, 1078, 2153 |
| PaeI | GCATGC | 1 cut(s) | 134 |
| PagI | TCATGA | 1 cut(s) | 2265 |
| PciI | ACATGT | 1 cut(s) | 2149 |
| PciSI | GCTCTTC | 3 cut(s) | 755, 981, 1528 |
| PctI | GAATGC | 1 cut(s) | 2185 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1279 |
| PleI | GAGTC | 4 cut(s) | 1345, 1529, 1535, 1706 |
| PpsI | GAGTC | 4 cut(s) | 1345, 1529, 1535, 1706 |
| Ppu21I | YACGTR | 1 cut(s) | 83 |
| PscI | ACATGT | 1 cut(s) | 2149 |
| Psp124BI | GAGCTC | 1 cut(s) | 351 |
| Psp6I | CCWGG | 4 cut(s) | 523, 853, 1384, 2204 |
| PspFI | CCCAGC | 1 cut(s) | 2209 |
| PspGI | CCWGG | 4 cut(s) | 523, 853, 1384, 2204 |
| PspN4I | GGNNCC | 9 cut(s) | 6, 273, 365, 458, 519, 538, 591, 1698, 1890 |
| PspPI | GGNCC | 3 cut(s) | 456, 563, 1696 |
| PstI | CTGCAG | 2 cut(s) | 1978, 2014 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2009 |
| PsuI | RGATCY | 4 cut(s) | 363, 1462, 1888, 2116 |
| RsaI | GTAC | 3 cut(s) | 89, 1033, 1621 |
| RsaNI | GTAC | 3 cut(s) | 88, 1032, 1620 |
| RseI | CAYNNNNRTG | 1 cut(s) | 191 |
| SacI | GAGCTC | 1 cut(s) | 351 |
| SapI | GCTCTTC | 3 cut(s) | 755, 981, 1528 |
| SaqAI | TTAA | 3 cut(s) | 732, 1155, 1332 |
| Sau3AI | GATC | 7 cut(s) | 363, 479, 1206, 1462, 1705, 1888, 2116 |
| Sau96I | GGNCC | 3 cut(s) | 456, 563, 1696 |
| ScaI | AGTACT | 1 cut(s) | 89 |
| SchI | GAGTC | 4 cut(s) | 1346, 1529, 1535, 1706 |
| ScrFI | CCNGG | 5 cut(s) | 525, 855, 1386, 1717, 2206 |
| SduI | GDGCHC | 6 cut(s) | 351, 520, 541, 755, 1771, 2320 |
| SfaNI | GCATC | 5 cut(s) | 745, 1411, 1564, 2374, 2392 |
| SfcI | CTRYAG | 2 cut(s) | 1974, 2010 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 191 |
| SmlI | CTYRAG | 1 cut(s) | 1495 |
| SmoI | CTYRAG | 1 cut(s) | 1495 |
| SpeI | ACTAGT | 1 cut(s) | 1046 |
| SphI | GCATGC | 1 cut(s) | 134 |
| SsiI | CCGC | 8 cut(s) | 361, 529, 541, 646, 817, 1822, 1930, 2273 |
| SspI | AATATT | 2 cut(s) | 896, 1150 |
| SspMI | CTAG | 6 cut(s) | 641, 1047, 1868, 2039, 2120, 2175 |
| SstI | GAGCTC | 1 cut(s) | 351 |
| StyD4I | CCNGG | 5 cut(s) | 523, 853, 1384, 1715, 2204 |
| StyI | CCWWGG | 1 cut(s) | 1107 |
| TaaI | ACNGT | 9 cut(s) | 13, 309, 388, 727, 757, 991, 1481, 1808, 2086 |
| TaiI | ACGT | 3 cut(s) | 85, 1954, 2059 |
| TaqI | TCGA | 8 cut(s) | 138, 332, 351, 570, 1209, 1987, 2301, 2352 |
| TatI | WGTACW | 2 cut(s) | 87, 1031 |
| TauI | GCSGC | 4 cut(s) | 531, 648, 820, 1933 |
| Tru1I | TTAA | 3 cut(s) | 732, 1155, 1332 |
| Tru9I | TTAA | 3 cut(s) | 732, 1155, 1332 |
| TscAI | CASTG | 7 cut(s) | 34, 427, 445, 760, 1452, 1537, 1707 |
| TseFI | GTSAC | 6 cut(s) | 78, 294, 303, 654, 991, 1532 |
| TseI | GCWGC | 8 cut(s) | 806, 998, 1811, 1973, 2009, 2012, 2051, 2375 |
| Tsp45I | GTSAC | 6 cut(s) | 78, 294, 303, 654, 991, 1532 |
| TspDTI | ATGAA | 6 cut(s) | 201, 1515, 1581, 2160, 2254, 2282 |
| TspGWI | ACGGA | 3 cut(s) | 313, 1270, 2180 |
| TspRI | CASTG | 7 cut(s) | 34, 427, 445, 760, 1452, 1537, 1707 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1279 |
| XapI | RAATTY | 5 cut(s) | 378, 488, 607, 1630, 2158 |
| XbaI | TCTAGA | 1 cut(s) | 2119 |
| XceI | RCATGY | 4 cut(s) | 134, 559, 1078, 2153 |
| XspI | CTAG | 6 cut(s) | 641, 1047, 1868, 2039, 2120, 2175 |
| ZrmI | AGTACT | 1 cut(s) | 89 |
| Zsp2I | ATGCAT | 1 cut(s) | 236 |