pycom72g00010

Transcription factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00000072
Physical Location & Seq
Forward (+)
24706 .. 26329
1624 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom72g00010.1

Sequence Viewer

Length: 1338 bp
ATGGCACCAACTGTTCCAATAGAATTCACTGGACAGAAGGAAAGGAAGTGTTTTCTTTCGCAGATGATGGGAAAGTCGCGGAAGTACTCTAAAGGGCAGTTGTCCGGTTTTGTTCCAGATTACCGGCATGCTGTTGAGACCTTGGCTGAATCGGAGGGGTTTGGAAGCTCAGGACGCGTAGACACAGAAATGACAGCTTCGGAGGATTCATGTGGGCCTAAAAGGAAATCCATTAGTTTGAATGTGGATGGTTATGATGGTTATGGGGTGCCAATGCAAGTATTGCCGTTGTCACGGATGTCGCTGTCTGAAAGGAAGGATTTGGGATTGAGGCTGCAATTGGAACTTGAACAGGTACGGGTTCTTCAGAAGAGAATTGCTACTATGAGTTCCAGTGTTGCTGTACTATCCCCATCTAGTGATATTCGGAGTTGCAGTGATGGGAAAAAGAAACCTCCACACGATGGATATCAAACATCATCCGCATTTTCTGCGCCTCAAGGTAAGAGAAAGGCTCCTCCTGGGCGTAATGGTGGTCGCACGAAAAAAAGCATGTCGGGACCTTTGGAGCCATCAAGGCCATTGGCTCCAGCCACCAATTCAAATGCTATGTTGATGAAACAATGCGAACAATTGCTAACCCGCTTAATTAAACATCAGTTTGGTTGGGTTTTTGAGAATCCAGTTGACGTGGTGAAGTTGAACATACCAGATTATTTTACAGTCATTAAGCATCCAATGGATTTGGGCACTGTGAAGAGCAAGTTGAATTCAGGCATGTACTCTTCTCCATTAGAGTTTGCTGCTGATGTGCGGCTTACTTTCTCAAATGCTTTGACTTACAACCCACCTGGAAATGAGTATCACATTATGGCCGAGACCCTCAGTAAATATTTTGAGCAGAGATGGAAAGCCATACAGAAGAAGCTTCCAGGAACAACTGTTATGCAGTCTTTGCCTTCAAGAGCAAGACCGGCTGTTCGTGAAGAAACCAATACTGCCCTATTGCCACCCTCAAAAAAGAAGAAAAGTACACCTGTTGATACTGCTATCAGGTCTGAATCTTTTAAATGCATCTTGACTGTTGAGGAGAAGGTTAAACTCACTCAGGAGCTGGATGATTTGCTGGGAGAATTGCCTGAAAATATTGTTAATTTCCTAAAAGAGCATAGCAGTAATGAAGGGCAAACTGACGAGGATGAGATTGAGATCGACCTTGATGCCCTTAGTGATGATACCTTGTTCGCCTTACGGAAGCTTATGGATGACCATCTTTTGGAGAAACAGAAAAGGCAGGAGAAAGTTGAACCTTGTGAAATGGAGCCTTGGTGGGAATGA

Protein Analysis

446

Amino Acids

49.84

Weight (kDa)

8.05

Isoelectric Point (pI)

51.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 209 - 293 4.8e-21 Bromodomain
BET PF17035 360 - 422 2.5e-15 Bromodomain extra-terminal - transcription regulation
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 4, 268
AccB7I CCANNNNNTGG 2 cut(s) 464, 1276
AccI GTMKAC 1 cut(s) 180
AccII CGCG 2 cut(s) 79, 177
AciI CCGC 4 cut(s) 79, 483, 643, 814
AcoI YGGCCR 1 cut(s) 873
AcsI RAATTY 2 cut(s) 23, 769
AcuI CTGAAG 1 cut(s) 350
AfaI GTAC 5 cut(s) 86, 357, 405, 782, 1033
AfiI CCNNNNNNNGG 2 cut(s) 464, 1276
AflIII ACRYGT 1 cut(s) 175
AgsI TTSAA 7 cut(s) 241, 350, 603, 703, 769, 963, 1307
AjiI CACGTC 1 cut(s) 691
AjnI CCWGG 3 cut(s) 520, 850, 931
AluBI AGCT 5 cut(s) 168, 197, 928, 1114, 1258
AluI AGCT 5 cut(s) 168, 197, 928, 1114, 1258
Alw26I GTCTC 2 cut(s) 131, 872
AlwNI CAGNNNCTG 1 cut(s) 1114
AoxI GGCC 3 cut(s) 215, 578, 873
ApeKI GCWGC 2 cut(s) 334, 803
ApoI RAATTY 2 cut(s) 23, 769
ArsI GACNNNNNNTTYG 2 cut(s) 963, 995
AspLEI GCGC 1 cut(s) 496
AspS9I GGNCC 2 cut(s) 215, 560
AsuHPI GGTGA 1 cut(s) 706
AvaII GGWCC 1 cut(s) 560
BaeGI GKGCMC 1 cut(s) 752
BanI GGYRCC 2 cut(s) 4, 268
BarI GAAGNNNNNNTAC 2 cut(s) 348, 380
BbvI GCAGC 2 cut(s) 321, 790
BccI CCATC 9 cut(s) 61, 242, 251, 421, 434, 458, 580, 900, 1278
BceAI ACGGC 1 cut(s) 271
BcgI CGANNNNNNTGC 2 cut(s) 1202, 1236
BciT130I CCWGG 3 cut(s) 522, 852, 933
BcoDI GTCTC 2 cut(s) 131, 872
BfaI CTAG 1 cut(s) 417
BglI GCCNNNNNGGC 1 cut(s) 577
BisI GCNGC 3 cut(s) 335, 804, 815
BlsI GCNGC 3 cut(s) 336, 805, 816
BmcAI AGTACT 1 cut(s) 86
Bme1390I CCNGG 3 cut(s) 522, 852, 933
Bme18I GGWCC 1 cut(s) 560
BmgBI CACGTC 1 cut(s) 691
BmgT120I GGNCC 2 cut(s) 215, 560
BmiI GGNNCC 7 cut(s) 6, 270, 516, 561, 570, 588, 1323
BmrFI CCNGG 3 cut(s) 522, 852, 933
BmsI GCATC 3 cut(s) 742, 1083, 1210
BplI GAGNNNNNCTC 2 cut(s) 499, 531
BpmI CTGGAG 1 cut(s) 573
Bpu10I CCTNAGC 1 cut(s) 169
BpuEI CTTGAG 1 cut(s) 483
BsaBI GATNNNNATC 3 cut(s) 468, 1208, 1269
BsaI GGTCTC 2 cut(s) 131, 872
BsaJI CCNNGG 3 cut(s) 141, 521, 1325
BsaWI WCCGGW 1 cut(s) 104
BsaXI ACNNNNNCTCC 3 cut(s) 421, 451, 1313
Bsc4I CCNNNNNNNGG 2 cut(s) 464, 1276
Bse118I RCCGGY 2 cut(s) 123, 973
Bse1I ACTGG 3 cut(s) 34, 393, 683
Bse8I GATNNNNATC 3 cut(s) 468, 1208, 1269
BseBI CCWGG 3 cut(s) 522, 852, 933
BseDI CCNNGG 3 cut(s) 141, 521, 1325
BseGI GGATG 7 cut(s) 253, 303, 479, 733, 1123, 1204, 1270
BseJI GATNNNNATC 3 cut(s) 468, 1208, 1269
BseLI CCNNNNNNNGG 2 cut(s) 464, 1276
BseMII CTCAG 3 cut(s) 183, 898, 1121
BseNI ACTGG 3 cut(s) 34, 393, 683
BseRI GAGGAG 2 cut(s) 507, 1103
BseSI GKGCMC 1 cut(s) 752
BseXI GCAGC 2 cut(s) 321, 790
BseYI CCCAGC 1 cut(s) 1126
Bsh1236I CGCG 2 cut(s) 79, 177
BshFI GGCC 3 cut(s) 217, 580, 875
BshNI GGYRCC 2 cut(s) 4, 268
BsiSI CCGG 3 cut(s) 105, 124, 974
BslFI GGGAC 1 cut(s) 573
BslI CCNNNNNNNGG 2 cut(s) 464, 1276
BsmAI GTCTC 2 cut(s) 131, 872
BsmFI GGGAC 1 cut(s) 573
BsnI GGCC 3 cut(s) 217, 580, 875
Bso31I GGTCTC 2 cut(s) 131, 872
Bsp1286I GDGCHC 1 cut(s) 752
Bsp143I GATC 1 cut(s) 1209
BspACI CCGC 4 cut(s) 79, 483, 643, 814
BspANI GGCC 3 cut(s) 217, 580, 875
BspCNI CTCAG 3 cut(s) 182, 897, 1120
BspFNI CGCG 2 cut(s) 79, 177
BspLI GGNNCC 7 cut(s) 6, 270, 516, 561, 570, 588, 1323
BspQI GCTCTTC 1 cut(s) 752
BspT107I GGYRCC 2 cut(s) 4, 268
BspTNI GGTCTC 2 cut(s) 131, 872
BsrFI RCCGGY 2 cut(s) 123, 973
BsrI ACTGG 3 cut(s) 34, 393, 683
BssAI RCCGGY 2 cut(s) 123, 973
BssECI CCNNGG 3 cut(s) 141, 521, 1325
BssMI GATC 1 cut(s) 1209
BssT1I CCWWGG 2 cut(s) 141, 1325
Bst2UI CCWGG 3 cut(s) 522, 852, 933
Bst4CI ACNGT 5 cut(s) 13, 724, 754, 943, 1084
Bst6I CTCTTC 3 cut(s) 365, 752, 790
BstAPI GCANNNNNTGC 3 cut(s) 283, 491, 955
BstC8I GCNNGC 1 cut(s) 129
BstDEI CTNAG 4 cut(s) 169, 884, 1107, 1226
BstF5I GGATG 7 cut(s) 253, 303, 479, 733, 1123, 1204, 1270
BstFNI CGCG 2 cut(s) 79, 177
BstHHI GCGC 1 cut(s) 496
BstKTI GATC 1 cut(s) 1212
BstMAI GTCTC 2 cut(s) 131, 872
BstMBI GATC 1 cut(s) 1209
BstMWI GCNNNNNNNGC 6 cut(s) 174, 283, 491, 577, 955, 974
BstNI CCWGG 3 cut(s) 522, 852, 933
BstNSI RCATGY 3 cut(s) 131, 556, 781
BstSCI CCNGG 3 cut(s) 520, 850, 931
BstSLI GKGCMC 1 cut(s) 752
BstUI CGCG 2 cut(s) 79, 177
BstV1I GCAGC 2 cut(s) 321, 790
BsuRI GGCC 3 cut(s) 217, 580, 875
BtrI CACGTC 1 cut(s) 691
BtsCI GGATG 7 cut(s) 253, 303, 479, 733, 1123, 1204, 1270
BtsI GCAGTG 1 cut(s) 442
BtsIMutI CAGTG 4 cut(s) 27, 400, 442, 750
Cac8I GCNNGC 1 cut(s) 129
CaiI CAGNNNCTG 1 cut(s) 1114
CfoI GCGC 1 cut(s) 496
Cfr10I RCCGGY 2 cut(s) 123, 973
Cfr13I GGNCC 2 cut(s) 215, 560
CseI GACGC 1 cut(s) 183
Csp6I GTAC 5 cut(s) 85, 356, 404, 781, 1032
CviAII CATG 4 cut(s) 128, 210, 553, 778
CviQI GTAC 5 cut(s) 85, 356, 404, 781, 1032
DdeI CTNAG 4 cut(s) 169, 884, 1107, 1226
DpnI GATC 1 cut(s) 1211
DpnII GATC 1 cut(s) 1209
DraI TTTAAA 1 cut(s) 1069
EaeI YGGCCR 1 cut(s) 873
Eam1104I CTCTTC 3 cut(s) 365, 752, 790
EarI CTCTTC 3 cut(s) 365, 752, 790
Eco130I CCWWGG 2 cut(s) 141, 1325
Eco31I GGTCTC 2 cut(s) 131, 872
Eco32I GATATC 1 cut(s) 470
Eco47I GGWCC 1 cut(s) 560
Eco57I CTGAAG 1 cut(s) 350
EcoO109I RGGNCCY 1 cut(s) 560
EcoRI GAATTC 2 cut(s) 23, 769
EcoRII CCWGG 3 cut(s) 520, 850, 931
EcoRV GATATC 1 cut(s) 470
EcoT14I CCWWGG 2 cut(s) 141, 1325
EcoT22I ATGCAT 1 cut(s) 1076
ErhI CCWWGG 2 cut(s) 141, 1325
FaeI CATG 4 cut(s) 131, 213, 556, 781
FaqI GGGAC 1 cut(s) 573
FatI CATG 4 cut(s) 127, 209, 552, 777
FauI CCCGC 1 cut(s) 650
FblI GTMKAC 1 cut(s) 180
Fnu4HI GCNGC 3 cut(s) 335, 804, 815
FokI GGATG 7 cut(s) 260, 310, 466, 720, 1130, 1211, 1277
Fsp4HI GCNGC 3 cut(s) 335, 804, 815
FspBI CTAG 1 cut(s) 417
GlaI GCGC 1 cut(s) 495
GluI GCNGC 3 cut(s) 335, 804, 815
GsaI CCCAGC 1 cut(s) 1130
GsuI CTGGAG 1 cut(s) 573
HaeIII GGCC 3 cut(s) 217, 580, 875
HapII CCGG 3 cut(s) 105, 124, 974
HgaI GACGC 1 cut(s) 183
HhaI GCGC 1 cut(s) 496
Hin1II CATG 4 cut(s) 131, 213, 556, 781
Hin6I GCGC 1 cut(s) 494
HinP1I GCGC 1 cut(s) 494
HincII GTYRAC 1 cut(s) 688
HindII GTYRAC 1 cut(s) 688
HindIII AAGCTT 2 cut(s) 926, 1256
HinfI GANTC 4 cut(s) 149, 206, 679, 1061
HpaII CCGG 3 cut(s) 105, 124, 974
HphI GGTGA 1 cut(s) 706
Hpy166II GTNNAC 3 cut(s) 181, 688, 1034
Hpy188I TCNGA 6 cut(s) 154, 202, 310, 369, 429, 1060
Hpy188III TCNNGA 7 cut(s) 116, 171, 558, 963, 983, 1078, 1109
Hpy8I GTNNAC 3 cut(s) 181, 688, 1034
HpyAV CCTTC 5 cut(s) 31, 310, 969, 1087, 1175
HpyCH4III ACNGT 5 cut(s) 13, 724, 754, 943, 1084
HpyCH4IV ACGT 1 cut(s) 690
HpyCH4V TGCA 5 cut(s) 277, 337, 435, 949, 1074
HpyF10VI GCNNNNNNNGC 6 cut(s) 174, 283, 491, 577, 955, 974
HpyF3I CTNAG 4 cut(s) 169, 884, 1107, 1226
HpySE526I ACGT 1 cut(s) 690
Hsp92II CATG 4 cut(s) 131, 213, 556, 781
HspAI GCGC 1 cut(s) 494
Kzo9I GATC 1 cut(s) 1209
LguI GCTCTTC 1 cut(s) 752
LmnI GCTCC 5 cut(s) 520, 568, 592, 1111, 1321
Lsp1109I GCAGC 2 cut(s) 321, 790
LweI GCATC 3 cut(s) 742, 1083, 1210
MaeI CTAG 1 cut(s) 417
MaeII ACGT 1 cut(s) 690
MaeIII GTNAC 1 cut(s) 291
MalI GATC 1 cut(s) 1211
MboI GATC 1 cut(s) 1209
MboII GAAGA 7 cut(s) 356, 382, 769, 777, 934, 998, 1036
MfeI CAATTG 2 cut(s) 338, 632
MhlI GDGCHC 1 cut(s) 752
MluCI AATT 9 cut(s) 23, 338, 375, 598, 632, 648, 769, 1133, 1153
MluI ACGCGT 1 cut(s) 175
Mph1103I ATGCAT 1 cut(s) 1076
MseI TTAA 6 cut(s) 647, 651, 729, 1068, 1098, 1152
MslI CAYNNNNRTG 1 cut(s) 188
MspI CCGG 3 cut(s) 105, 124, 974
MspR9I CCNGG 3 cut(s) 522, 852, 933
MunI CAATTG 2 cut(s) 338, 632
MvaI CCWGG 3 cut(s) 522, 852, 933
MvnI CGCG 2 cut(s) 79, 177
MwoI GCNNNNNNNGC 6 cut(s) 174, 283, 491, 577, 955, 974
NdeII GATC 1 cut(s) 1209
NlaIII CATG 4 cut(s) 131, 213, 556, 781
NlaIV GGNNCC 7 cut(s) 6, 270, 516, 561, 570, 588, 1323
NmeAIII GCCGAG 1 cut(s) 901
NmuCI GTSAC 1 cut(s) 291
NsiI ATGCAT 1 cut(s) 1076
NspI RCATGY 3 cut(s) 131, 556, 781
PacI TTAATTAA 1 cut(s) 651
PaeI GCATGC 1 cut(s) 131
PciSI GCTCTTC 1 cut(s) 752
PfeI GAWTC 4 cut(s) 149, 206, 679, 1061
PflMI CCANNNNNTGG 2 cut(s) 464, 1276
PfoI TCCNGGA 1 cut(s) 931
PkrI GCNGC 3 cut(s) 336, 805, 816
PpuMI RGGWCCY 1 cut(s) 560
Psp5II RGGWCCY 1 cut(s) 560
Psp6I CCWGG 3 cut(s) 520, 850, 931
PspFI CCCAGC 1 cut(s) 1126
PspGI CCWGG 3 cut(s) 520, 850, 931
PspN4I GGNNCC 7 cut(s) 6, 270, 516, 561, 570, 588, 1323
PspPI GGNCC 2 cut(s) 215, 560
PspPPI RGGWCCY 1 cut(s) 560
PstNI CAGNNNCTG 1 cut(s) 1114
RsaI GTAC 5 cut(s) 86, 357, 405, 782, 1033
RsaNI GTAC 5 cut(s) 85, 356, 404, 781, 1032
RseI CAYNNNNRTG 1 cut(s) 188
SapI GCTCTTC 1 cut(s) 752
SaqAI TTAA 6 cut(s) 647, 651, 729, 1068, 1098, 1152
SatI GCNGC 3 cut(s) 335, 804, 815
Sau3AI GATC 1 cut(s) 1209
Sau96I GGNCC 2 cut(s) 215, 560
ScaI AGTACT 1 cut(s) 86
ScrFI CCNGG 3 cut(s) 522, 852, 933
SduI GDGCHC 1 cut(s) 752
SfaNI GCATC 3 cut(s) 742, 1083, 1210
SinI GGWCC 1 cut(s) 560
SmiMI CAYNNNNRTG 1 cut(s) 188
SmlI CTYRAG 1 cut(s) 498
SmoI CTYRAG 1 cut(s) 498
SphI GCATGC 1 cut(s) 131
Sse9I AATT 9 cut(s) 23, 338, 375, 598, 632, 648, 769, 1133, 1153
SsiI CCGC 4 cut(s) 79, 483, 643, 814
SspI AATATT 2 cut(s) 893, 1147
SspMI CTAG 1 cut(s) 417
StyD4I CCNGG 3 cut(s) 520, 850, 931
StyI CCWWGG 2 cut(s) 141, 1325
TaaI ACNGT 5 cut(s) 13, 724, 754, 943, 1084
TaiI ACGT 1 cut(s) 693
TaqI TCGA 1 cut(s) 1212
TasI AATT 9 cut(s) 23, 338, 375, 598, 632, 648, 769, 1133, 1153
TatI WGTACW 4 cut(s) 84, 403, 780, 1031
TauI GCSGC 1 cut(s) 817
TfiI GAWTC 4 cut(s) 149, 206, 679, 1061
Tru1I TTAA 6 cut(s) 647, 651, 729, 1068, 1098, 1152
Tru9I TTAA 6 cut(s) 647, 651, 729, 1068, 1098, 1152
TscAI CASTG 4 cut(s) 34, 400, 442, 757
TseFI GTSAC 1 cut(s) 291
TseI GCWGC 2 cut(s) 334, 803
Tsp45I GTSAC 1 cut(s) 291
TspDTI ATGAA 3 cut(s) 198, 632, 1194
TspGWI ACGGA 2 cut(s) 310, 1267
TspRI CASTG 4 cut(s) 34, 400, 442, 757
Van91I CCANNNNNTGG 2 cut(s) 464, 1276
VpaK11BI GGWCC 1 cut(s) 560
XapI RAATTY 2 cut(s) 23, 769
XceI RCATGY 3 cut(s) 131, 556, 781
XmiI GTMKAC 1 cut(s) 180
XspI CTAG 1 cut(s) 417
ZrmI AGTACT 1 cut(s) 86
Zsp2I ATGCAT 1 cut(s) 1076
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.