Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0002714

Physical Location & Seq

Genomic Coordinates Forward (+)

16434261 .. 16437762

Gene Structure 3502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g13510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGGATGACCATCTTTTGGAGAAACAGAAAAGGCAGGAGAAAGTTGAACCTTGTGAAATGGAGATTATTAACGAGTCGGGATTTAGCAACTCATCAATGCAACCCTGCAAAGGCAATGATCCAGTTGATGAGGATGTGGATATCCTTGGTGGGAATGACGCTCCTGTTTCAAGCTTTCCTCCAGTAGAGATAGAGAAAGATGCAGCTCACAGAAACAGTAAATGCAGTAGCGCAAGTAGCTCCAGCAGTGATTCAGGCTCTTCATCTAGTGATTCTGATTCTGGCAGTTCTTCAGAAAGTGAATCTGATGATGCTAAAGCTCCAGCTTCTTTTGGTGGAGGAAAGGAAAATCTAGGTACTGGAGCAAATTCAGACCAAAAGAGAAGCGATATTGGGGATTCAGAAATTCGAAATAATTCAATAAATGGGGTGGGCCCACAACTAGAGCAGGACACCCTGTCTAAATTAAACCTTGTTGAGGAGGCTGGACATAGAGAGGGTAACGTAGGGGAGAGTGCTCCAACTGAGAGGCAAGTCTCCCCCGATAAGCTCTACCGTGCAGCTTTATTGAGGAATAGATTTGCTGACACAATACTAAAAGCCCGAGAGAAGGCACTAGAAAAGGGTGAAAAGCTGGATCCCGAGAAATTGCGAATTGAAAGAGAGGAACTTGAAAAGCGGCAAAAAGAAGAGAAAGCACGCTTACAAGCTGAAGCCAAAGCCGCAGAAGAGGCTCGAAAGAAGGCTGAAGCCGAAGCTGCAGCCGAAGCGAAAAGGCAGAGGGAACTAGAAAGAGAAGCCGCACGTCAGGCACTGCAAATGATGGAAAGGACTGTTGAAATTAATGAGAATAGTCAGTTTCTAGAAGATCTAGAAATGTTTAGGGCAGTGGTTGATGAACATGTGCCAATTTTCACGGAGGAGACCACCCCGGAGCATATTCAGGATGAGCTTGCCCGGCTTGGTAGTTTTAAACTACAGGGAAGTAGTAATCCCTTGGAGCAACTTGGTTTGTTCATGAAGACAGACGATGATATAGAAGAAGAAATTGAACCTCCCCAGAGTGCCCCAGAACCAGAGCCTGAACCTGAACCGGAAAGGGAACCAGAACCAGAACCAGAACCAGAACCAGAACCAGAACCAGAACCAGAACAAGAACCAGAACCAGCAAATGATGTTGAAGCAAAAGACGTTGAAGAAGGAGAGATCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0008150 GO:0009266 GO:0009267 GO:0009409 GO:0009605 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0033993 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051365 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0080090 GO:0097305 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

405

Amino Acids

44.65

Weight (kDa)

4.4

Isoelectric Point (pI)

70.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63320 AT5G63320 AT5G63320
fragaria_vesca	FvH4_2g09340 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g15310 FvH4_7g03961
malus_domestica	MD06G1147900.v1.1 MD14G1162200.v1.1
prunus_persica	Prupe.5G154800_v2.0.a1
pyrus_communis	pycom06g13720 pycom06g13730 pycom14g13510 pycom72g00010
rosa_chinensis	RchiOBHm_Chr7g0190781
rosa_laevigata	RLG00000004496 RLG00000004499
rosa_multiflora	Rmu_co8422347.1_g000001 Rmu_sc0002819.1_g000007
rosa_roxburghii	Rroxscaffold_3G00264320
rosa_rugosa	Rorug06G0506700 Rorug06G0506700 Rorug06G0506700 Rorug06G0506800
rosa_samantha	Rh7AG113500 Rh7BG116000 Rh7CG118600 Rh7DG117500
rosa_wichuraiana	Rw7G009910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	16
AciI	CCGC	3 cut(s)	679, 723, 801
AclWI	GGATC	3 cut(s)	113, 632, 645
AcsI	RAATTY	2 cut(s)	367, 405
AcuI	CTGAAG	3 cut(s)	276, 732, 768
AfaI	GTAC	1 cut(s)	358
AfiI	CCNNNNNNNGG	4 cut(s)	16, 110, 478, 610
AflIII	ACRYGT	1 cut(s)	901
AgsI	TTSAA	9 cut(s)	47, 171, 420, 659, 674, 839, 1052, 1181, 1196
AhdI	GACNNNNNGTC	1 cut(s)	457
AjiI	CACGTC	1 cut(s)	806
Alw21I	GWGCWC	1 cut(s)	520
Alw26I	GTCTC	2 cut(s)	541, 917
AlwI	GGATC	3 cut(s)	113, 632, 645
AlwNI	CAGNNNCTG	2 cut(s)	814, 1082
Ama87I	CYCGRG	2 cut(s)	603, 641
AoxI	GGCC	1 cut(s)	433
ApaI	GGGCCC	1 cut(s)	437
ApeKI	GCWGC	4 cut(s)	203, 560, 758, 761
ApoI	RAATTY	2 cut(s)	367, 405
AseI	ATTAAT	1 cut(s)	843
Asp700I	GAANNNNTTC	1 cut(s)	415
AspLEI	GCGC	1 cut(s)	233
AspS9I	GGNCC	2 cut(s)	433, 434
AsuC2I	CCSGG	2 cut(s)	932, 958
AsuHPI	GGTGA	1 cut(s)	638
AsuII	TTCGAA	1 cut(s)	409
AvaI	CYCGRG	2 cut(s)	603, 641
BaeGI	GKGCMC	2 cut(s)	437, 1069
BamHI	GGATCC	1 cut(s)	637
BanII	GRGCYC	1 cut(s)	437
BbsI	GAAGAC	1 cut(s)	1028
Bbv12I	GWGCWC	1 cut(s)	520
BbvI	GCAGC	4 cut(s)	215, 572, 745, 773
BccI	CCATC	2 cut(s)	18, 817
BcnI	CCSGG	2 cut(s)	932, 958
BcoDI	GTCTC	2 cut(s)	541, 917
BfaI	CTAG	7 cut(s)	267, 353, 443, 617, 788, 863, 872
BfmI	CTRYAG	2 cut(s)	759, 977
BglII	AGATCT	1 cut(s)	868
BisI	GCNGC	7 cut(s)	204, 561, 680, 723, 759, 762, 801
BlsI	GCNGC	7 cut(s)	205, 562, 681, 724, 760, 763, 802
Bme1390I	CCNGG	2 cut(s)	932, 958
BmeRI	GACNNNNNGTC	1 cut(s)	457
BmeT110I	CYCGRG	2 cut(s)	603, 641
BmgBI	CACGTC	1 cut(s)	806
BmgT120I	GGNCC	2 cut(s)	433, 434
BmiI	GGNNCC	3 cut(s)	435, 639, 1104
BmrFI	CCNGG	2 cut(s)	932, 958
BmsI	GCATC	2 cut(s)	190, 301
BpiI	GAAGAC	1 cut(s)	1028
BpmI	CTGGAG	4 cut(s)	165, 226, 306, 381
Bpu14I	TTCGAA	1 cut(s)	409
BpuMI	CCSGG	2 cut(s)	932, 958
Bsa29I	ATCGAT	1 cut(s)	1209
BsaBI	GATNNNNATC	1 cut(s)	9
BsaI	GGTCTC	1 cut(s)	917
BsaJI	CCNNGG	3 cut(s)	145, 930, 996
BsaWI	WCCGGW	1 cut(s)	1093
Bsc4I	CCNNNNNNNGG	4 cut(s)	16, 110, 478, 610
Bse1I	ACTGG	3 cut(s)	122, 182, 364
Bse3DI	GCAATG	1 cut(s)	121
Bse8I	GATNNNNATC	1 cut(s)	9
BseCI	ATCGAT	1 cut(s)	1209
BseDI	CCNNGG	3 cut(s)	145, 930, 996
BseGI	GGATG	3 cut(s)	10, 139, 952
BseJI	GATNNNNATC	1 cut(s)	9
BseLI	CCNNNNNNNGG	4 cut(s)	16, 110, 478, 610
BseMI	GCAATG	1 cut(s)	121
BseMII	CTCAG	1 cut(s)	516
BseNI	ACTGG	3 cut(s)	122, 182, 364
BseRI	GAGGAG	2 cut(s)	494, 935
BseSI	GKGCMC	2 cut(s)	437, 1069
BseXI	GCAGC	4 cut(s)	215, 572, 745, 773
BsgI	GTGCAG	1 cut(s)	579
BshFI	GGCC	1 cut(s)	435
BshVI	ATCGAT	1 cut(s)	1209
BsiHKAI	GWGCWC	1 cut(s)	520
BsiHKCI	CYCGRG	2 cut(s)	603, 641
BsiSI	CCGG	3 cut(s)	932, 958, 1094
BslI	CCNNNNNNNGG	4 cut(s)	16, 110, 478, 610
BsmAI	GTCTC	2 cut(s)	541, 917
BsnI	GGCC	1 cut(s)	435
Bso31I	GGTCTC	1 cut(s)	917
BsoBI	CYCGRG	2 cut(s)	603, 641
Bsp119I	TTCGAA	1 cut(s)	409
Bsp120I	GGGCCC	1 cut(s)	433
Bsp1286I	GDGCHC	3 cut(s)	437, 520, 1069
Bsp143I	GATC	4 cut(s)	118, 637, 868, 1206
BspACI	CCGC	3 cut(s)	679, 723, 801
BspANI	GGCC	1 cut(s)	435
BspCNI	CTCAG	1 cut(s)	517
BspDI	ATCGAT	1 cut(s)	1209
BspHI	TCATGA	1 cut(s)	1017
BspLI	GGNNCC	3 cut(s)	435, 639, 1104
BspMAI	CTGCAG	1 cut(s)	763
BspPI	GGATC	3 cut(s)	113, 632, 645
BspQI	GCTCTTC	1 cut(s)	265
BspT104I	TTCGAA	1 cut(s)	409
BspTNI	GGTCTC	1 cut(s)	917
BsrDI	GCAATG	1 cut(s)	121
BsrI	ACTGG	3 cut(s)	122, 182, 364
BssECI	CCNNGG	3 cut(s)	145, 930, 996
BssMI	GATC	4 cut(s)	118, 637, 868, 1206
BssT1I	CCWWGG	2 cut(s)	145, 996
Bst4CI	ACNGT	3 cut(s)	218, 557, 835
Bst6I	CTCTTC	3 cut(s)	265, 684, 723
BstBI	TTCGAA	1 cut(s)	409
BstC8I	GCNNGC	2 cut(s)	700, 954
BstDEI	CTNAG	1 cut(s)	525
BstENI	CCTNNNNNAGG	1 cut(s)	476
BstF5I	GGATG	3 cut(s)	10, 139, 952
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	4 cut(s)	121, 640, 871, 1209
BstMAI	GTCTC	2 cut(s)	541, 917
BstMBI	GATC	4 cut(s)	118, 637, 868, 1206
BstMWI	GCNNNNNNNGC	7 cut(s)	237, 722, 731, 758, 767, 809, 958
BstNSI	RCATGY	1 cut(s)	905
BstSCI	CCNGG	2 cut(s)	930, 956
BstSFI	CTRYAG	2 cut(s)	759, 977
BstSLI	GKGCMC	2 cut(s)	437, 1069
BstV1I	GCAGC	4 cut(s)	215, 572, 745, 773
BstV2I	GAAGAC	1 cut(s)	1028
BstX2I	RGATCY	2 cut(s)	637, 868
BstYI	RGATCY	2 cut(s)	637, 868
Bsu15I	ATCGAT	1 cut(s)	1209
BsuRI	GGCC	1 cut(s)	435
BsuTUI	ATCGAT	1 cut(s)	1209
BtrI	CACGTC	1 cut(s)	806
BtsCI	GGATG	3 cut(s)	10, 139, 952
BtsI	GCAGTG	3 cut(s)	253, 812, 894
BtsIMutI	CAGTG	3 cut(s)	253, 812, 894
Cac8I	GCNNGC	2 cut(s)	700, 954
CaiI	CAGNNNCTG	2 cut(s)	814, 1082
CciI	TCATGA	1 cut(s)	1017
CfoI	GCGC	1 cut(s)	233
Cfr13I	GGNCC	2 cut(s)	433, 434
ClaI	ATCGAT	1 cut(s)	1209
CseI	GACGC	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	357
CviAII	CATG	2 cut(s)	902, 1018
CviQI	GTAC	1 cut(s)	357
DdeI	CTNAG	1 cut(s)	525
DpnI	GATC	4 cut(s)	120, 639, 870, 1208
DpnII	GATC	4 cut(s)	118, 637, 868, 1206
DraI	TTTAAA	1 cut(s)	973
DriI	GACNNNNNGTC	1 cut(s)	457
Eam1104I	CTCTTC	3 cut(s)	265, 684, 723
Eam1105I	GACNNNNNGTC	1 cut(s)	457
EarI	CTCTTC	3 cut(s)	265, 684, 723
Eco130I	CCWWGG	2 cut(s)	145, 996
Eco24I	GRGCYC	1 cut(s)	437
Eco31I	GGTCTC	1 cut(s)	917
Eco32I	GATATC	1 cut(s)	142
Eco57I	CTGAAG	3 cut(s)	276, 732, 768
Eco88I	CYCGRG	2 cut(s)	603, 641
EcoNI	CCTNNNNNAGG	1 cut(s)	476
EcoRV	GATATC	1 cut(s)	142
EcoT14I	CCWWGG	2 cut(s)	145, 996
EcoT38I	GRGCYC	1 cut(s)	437
ErhI	CCWWGG	2 cut(s)	145, 996
FaeI	CATG	2 cut(s)	905, 1021
FaiI	YATR	5 cut(s)	492, 903, 939, 1019, 1037
FatI	CATG	2 cut(s)	901, 1017
Fnu4HI	GCNGC	7 cut(s)	204, 561, 680, 723, 759, 762, 801
FokI	GGATG	3 cut(s)	17, 146, 959
FriOI	GRGCYC	1 cut(s)	437
Fsp4HI	GCNGC	7 cut(s)	204, 561, 680, 723, 759, 762, 801
FspBI	CTAG	7 cut(s)	267, 353, 443, 617, 788, 863, 872
GlaI	GCGC	1 cut(s)	232
GluI	GCNGC	7 cut(s)	204, 561, 680, 723, 759, 762, 801
GsuI	CTGGAG	4 cut(s)	165, 226, 306, 381
HaeIII	GGCC	1 cut(s)	435
HapII	CCGG	3 cut(s)	932, 958, 1094
HgaI	GACGC	1 cut(s)	167
HhaI	GCGC	1 cut(s)	233
Hin1II	CATG	2 cut(s)	905, 1021
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HindIII	AAGCTT	1 cut(s)	172
HinfI	GANTC	6 cut(s)	74, 251, 272, 278, 302, 398
HpaII	CCGG	3 cut(s)	932, 958, 1094
HphI	GGTGA	1 cut(s)	638
Hpy188I	TCNGA	5 cut(s)	277, 295, 307, 373, 403
Hpy188III	TCNNGA	6 cut(s)	78, 641, 863, 872, 944, 1018
HpyAV	CCTTC	3 cut(s)	604, 736, 1193
HpyCH4III	ACNGT	3 cut(s)	218, 557, 835
HpyCH4IV	ACGT	3 cut(s)	504, 805, 1191
HpyCH4V	TGCA	7 cut(s)	100, 108, 203, 225, 560, 761, 817
HpyF10VI	GCNNNNNNNGC	7 cut(s)	237, 722, 731, 758, 767, 809, 958
HpyF3I	CTNAG	1 cut(s)	525
HpySE526I	ACGT	3 cut(s)	504, 805, 1191
Hsp92II	CATG	2 cut(s)	905, 1021
HspAI	GCGC	1 cut(s)	231
Kzo9I	GATC	4 cut(s)	118, 637, 868, 1206
LguI	GCTCTTC	1 cut(s)	265
LmnI	GCTCC	7 cut(s)	166, 245, 325, 362, 523, 934, 1000
Lsp1109I	GCAGC	4 cut(s)	215, 572, 745, 773
LweI	GCATC	2 cut(s)	190, 301
MaeI	CTAG	7 cut(s)	267, 353, 443, 617, 788, 863, 872
MaeII	ACGT	3 cut(s)	504, 805, 1191
MaeIII	GTNAC	1 cut(s)	500
MalI	GATC	4 cut(s)	120, 639, 870, 1208
MboI	GATC	4 cut(s)	118, 637, 868, 1206
MboII	GAAGA	9 cut(s)	252, 282, 701, 740, 878, 1033, 1052, 1055, 1208
MflI	RGATCY	2 cut(s)	637, 868
MhlI	GDGCHC	3 cut(s)	437, 520, 1069
MluCI	AATT	9 cut(s)	367, 405, 415, 464, 647, 654, 840, 909, 1047
MlyI	GAGTC	1 cut(s)	83
MmeI	TCCRAC	1 cut(s)	545
MroXI	GAANNNNTTC	1 cut(s)	415
MseI	TTAA	4 cut(s)	69, 467, 843, 972
MspI	CCGG	3 cut(s)	932, 958, 1094
MspR9I	CCNGG	2 cut(s)	932, 958
MwoI	GCNNNNNNNGC	7 cut(s)	237, 722, 731, 758, 767, 809, 958
NciI	CCSGG	2 cut(s)	932, 958
NdeII	GATC	4 cut(s)	118, 637, 868, 1206
NlaIII	CATG	2 cut(s)	905, 1021
NlaIV	GGNNCC	3 cut(s)	435, 639, 1104
NspI	RCATGY	1 cut(s)	905
NspV	TTCGAA	1 cut(s)	409
PagI	TCATGA	1 cut(s)	1017
PciI	ACATGT	1 cut(s)	901
PciSI	GCTCTTC	1 cut(s)	265
PdmI	GAANNNNTTC	1 cut(s)	415
PfeI	GAWTC	5 cut(s)	251, 272, 278, 302, 398
PflMI	CCANNNNNTGG	1 cut(s)	16
PkrI	GCNGC	7 cut(s)	205, 562, 681, 724, 760, 763, 802
PleI	GAGTC	1 cut(s)	82
PpsI	GAGTC	1 cut(s)	82
PscI	ACATGT	1 cut(s)	901
PshBI	ATTAAT	1 cut(s)	843
PspN4I	GGNNCC	3 cut(s)	435, 639, 1104
PspOMI	GGGCCC	1 cut(s)	433
PspPI	GGNCC	2 cut(s)	433, 434
PstI	CTGCAG	1 cut(s)	763
PstNI	CAGNNNCTG	2 cut(s)	814, 1082
PsuI	RGATCY	2 cut(s)	637, 868
RsaI	GTAC	1 cut(s)	358
RsaNI	GTAC	1 cut(s)	357
SapI	GCTCTTC	1 cut(s)	265
SaqAI	TTAA	4 cut(s)	69, 467, 843, 972
SatI	GCNGC	7 cut(s)	204, 561, 680, 723, 759, 762, 801
Sau3AI	GATC	4 cut(s)	118, 637, 868, 1206
Sau96I	GGNCC	2 cut(s)	433, 434
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	2 cut(s)	932, 958
SduI	GDGCHC	3 cut(s)	437, 520, 1069
SfaNI	GCATC	2 cut(s)	190, 301
SfcI	CTRYAG	2 cut(s)	759, 977
SfuI	TTCGAA	1 cut(s)	409
Sse9I	AATT	9 cut(s)	367, 405, 415, 464, 647, 654, 840, 909, 1047
SsiI	CCGC	3 cut(s)	679, 723, 801
SspMI	CTAG	7 cut(s)	267, 353, 443, 617, 788, 863, 872
StyD4I	CCNGG	2 cut(s)	930, 956
StyI	CCWWGG	2 cut(s)	145, 996
TaaI	ACNGT	3 cut(s)	218, 557, 835
TaiI	ACGT	3 cut(s)	507, 808, 1194
TaqI	TCGA	3 cut(s)	409, 736, 1209
TasI	AATT	9 cut(s)	367, 405, 415, 464, 647, 654, 840, 909, 1047
TauI	GCSGC	3 cut(s)	682, 725, 803
TfiI	GAWTC	5 cut(s)	251, 272, 278, 302, 398
Tru1I	TTAA	4 cut(s)	69, 467, 843, 972
Tru9I	TTAA	4 cut(s)	69, 467, 843, 972
TscAI	CASTG	3 cut(s)	253, 819, 894
TseI	GCWGC	4 cut(s)	203, 560, 758, 761
TspDTI	ATGAA	4 cut(s)	252, 912, 1006, 1034
TspGWI	ACGGA	1 cut(s)	932
TspRI	CASTG	3 cut(s)	253, 819, 894
Van91I	CCANNNNNTGG	1 cut(s)	16
VspI	ATTAAT	1 cut(s)	843
XagI	CCTNNNNNAGG	1 cut(s)	476
XapI	RAATTY	2 cut(s)	367, 405
XbaI	TCTAGA	2 cut(s)	862, 871
XceI	RCATGY	1 cut(s)	905
XmnI	GAANNNNTTC	1 cut(s)	415
XspI	CTAG	7 cut(s)	267, 353, 443, 617, 788, 863, 872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.