Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002714

Physical Location & Seq

Genomic Coordinates Reverse (-)

4558962 .. 4559839

Gene Structure 878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g03961.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGAAAATCATCACAAAAATATCTGCTCTTAATTTCGGCGCATCATCTTACAACTCGTGCTGTGACATCGTAGAGGAGAGTGCTCCACCCGAGAGGCAGGTCTCCCCTCAAGAGCGCTACCGTTCAGCTTTATTAAGGAATCGGTTTGCAGACACAATATTTAAAGCGAAGGAGAAGGCACTACTTGAAAAGAGGGAGGAACTTGAAAGGAGGCGTAAAGAAGAAAAAGCACGCTTGCAAGCCGAGGCCAGAGCTGCAGAAGAAGCTCGAAAAAAGGCTGAAGCAGAAGCTGCAGCTGAAGCTAGAAGGCAAAGGGAACTAGAGAGAGAAGTTGCTCGCCAGGCATTGCAAATGATGGAAAAGACTGTTGAAATCAATGAGAACAGTCGTTTCATGGAAGATCTAGAAATGTTTAGGGCTGGTGACGATGATCATTTACCACATTACATCGAGGAAACCAGCCCTGAGCATTTTCATAATGAGCTATTGGTAGTTTCAAACTGTAGGGAAGCAGTAATCCCGTGGAGCAACTTGGCTTATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0008150 GO:0009266 GO:0009267 GO:0009409 GO:0009605 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0033993 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051365 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0080090 GO:0097305 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

182

Amino Acids

21.07

Weight (kDa)

5.59

Isoelectric Point (pI)

59.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63320 AT5G63320 AT5G63320
fragaria_vesca	FvH4_2g09340 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g15310 FvH4_7g03961
malus_domestica	MD06G1147900.v1.1 MD14G1162200.v1.1
prunus_persica	Prupe.5G154800_v2.0.a1
pyrus_communis	pycom06g13720 pycom06g13730 pycom14g13510 pycom72g00010
rosa_chinensis	RchiOBHm_Chr7g0190781
rosa_laevigata	RLG00000004496 RLG00000004499
rosa_multiflora	Rmu_co8422347.1_g000001 Rmu_sc0002819.1_g000007
rosa_roxburghii	Rroxscaffold_3G00264320
rosa_rugosa	Rorug06G0506700 Rorug06G0506700 Rorug06G0506700 Rorug06G0506800
rosa_samantha	Rh7AG113500 Rh7BG116000 Rh7CG118600 Rh7DG117500
rosa_wichuraiana	Rw7G009910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	88
AcuI	CTGAAG	2 cut(s)	300, 318
AfeI	AGCGCT	1 cut(s)	116
AgsI	TTSAA	4 cut(s)	188, 206, 371, 498
AjnI	CCWGG	1 cut(s)	339
AluBI	AGCT	7 cut(s)	128, 254, 266, 290, 296, 302, 484
AluI	AGCT	7 cut(s)	128, 254, 266, 290, 296, 302, 484
Alw21I	GWGCWC	1 cut(s)	85
Alw26I	GTCTC	1 cut(s)	106
AlwNI	CAGNNNCTG	1 cut(s)	290
Ama87I	CYCGRG	1 cut(s)	89
Aor51HI	AGCGCT	1 cut(s)	116
AoxI	GGCC	1 cut(s)	246
ApeKI	GCWGC	3 cut(s)	254, 290, 293
AspLEI	GCGC	2 cut(s)	41, 117
AsuHPI	GGTGA	1 cut(s)	434
AvaI	CYCGRG	1 cut(s)	89
BauI	CACGAG	1 cut(s)	55
Bbv12I	GWGCWC	1 cut(s)	85
BbvI	GCAGC	3 cut(s)	241, 277, 305
BccI	CCATC	1 cut(s)	349
BciT130I	CCWGG	1 cut(s)	341
BclI	TGATCA	1 cut(s)	430
BcoDI	GTCTC	1 cut(s)	106
BfaI	CTAG	3 cut(s)	303, 320, 404
BfmI	CTRYAG	3 cut(s)	255, 291, 502
BfoI	RGCGCY	1 cut(s)	118
BfuAI	ACCTGC	1 cut(s)	88
BglII	AGATCT	1 cut(s)	400
BisI	GCNGC	3 cut(s)	255, 291, 294
BlsI	GCNGC	3 cut(s)	256, 292, 295
Bme1390I	CCNGG	1 cut(s)	341
BmeT110I	CYCGRG	1 cut(s)	89
BmrFI	CCNGG	1 cut(s)	341
BmsI	GCATC	1 cut(s)	50
Bpu10I	CCTNAGC	1 cut(s)	465
BpuEI	CTTGAG	1 cut(s)	93
BsaI	GGTCTC	1 cut(s)	106
BsaJI	CCNNGG	2 cut(s)	243, 521
Bse3DI	GCAATG	1 cut(s)	344
BseBI	CCWGG	1 cut(s)	341
BseDI	CCNNGG	2 cut(s)	243, 521
BseMI	GCAATG	1 cut(s)	344
BseMII	CTCAG	1 cut(s)	456
BseRI	GAGGAG	1 cut(s)	89
BseXI	GCAGC	3 cut(s)	241, 277, 305
BshFI	GGCC	1 cut(s)	248
BsiHKAI	GWGCWC	1 cut(s)	85
BsiHKCI	CYCGRG	1 cut(s)	89
BsmAI	GTCTC	1 cut(s)	106
BsnI	GGCC	1 cut(s)	248
Bso31I	GGTCTC	1 cut(s)	106
BsoBI	CYCGRG	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp143I	GATC	2 cut(s)	400, 430
BspANI	GGCC	1 cut(s)	248
BspCNI	CTCAG	1 cut(s)	457
BspHI	TCATGA	1 cut(s)	542
BspMAI	CTGCAG	2 cut(s)	259, 295
BspMI	ACCTGC	1 cut(s)	88
BspTNI	GGTCTC	1 cut(s)	106
BsrDI	GCAATG	1 cut(s)	344
BssECI	CCNNGG	2 cut(s)	243, 521
BssMI	GATC	2 cut(s)	400, 430
BssSI	CACGAG	1 cut(s)	55
Bst2BI	CACGAG	1 cut(s)	55
Bst2UI	CCWGG	1 cut(s)	341
Bst4CI	ACNGT	4 cut(s)	122, 367, 386, 503
BstAPI	GCANNNNNTGC	1 cut(s)	290
BstC8I	GCNNGC	4 cut(s)	232, 236, 240, 337
BstDEI	CTNAG	1 cut(s)	465
BstDSI	CCRYGG	1 cut(s)	521
BstH2I	RGCGCY	1 cut(s)	118
BstHHI	GCGC	2 cut(s)	41, 117
BstKTI	GATC	2 cut(s)	403, 433
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	2 cut(s)	400, 430
BstMWI	GCNNNNNNNGC	5 cut(s)	254, 263, 290, 299, 341
BstNI	CCWGG	1 cut(s)	341
BstSCI	CCNGG	1 cut(s)	339
BstSFI	CTRYAG	3 cut(s)	255, 291, 502
BstV1I	GCAGC	3 cut(s)	241, 277, 305
BstX2I	RGATCY	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	400
BsuRI	GGCC	1 cut(s)	248
BtgI	CCRYGG	1 cut(s)	521
BveI	ACCTGC	1 cut(s)	88
Cac8I	GCNNGC	4 cut(s)	232, 236, 240, 337
CaiI	CAGNNNCTG	1 cut(s)	290
CciI	TCATGA	1 cut(s)	542
CfoI	GCGC	2 cut(s)	41, 117
CviAII	CATG	2 cut(s)	394, 543
DdeI	CTNAG	1 cut(s)	465
DpnI	GATC	2 cut(s)	402, 432
DpnII	GATC	2 cut(s)	400, 430
DraI	TTTAAA	1 cut(s)	163
Eco31I	GGTCTC	1 cut(s)	106
Eco47III	AGCGCT	1 cut(s)	116
Eco57I	CTGAAG	2 cut(s)	300, 318
Eco88I	CYCGRG	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	339
FaeI	CATG	2 cut(s)	397, 546
FaiI	YATR	3 cut(s)	395, 477, 544
FatI	CATG	2 cut(s)	393, 542
FbaI	TGATCA	1 cut(s)	430
Fnu4HI	GCNGC	3 cut(s)	255, 291, 294
Fsp4HI	GCNGC	3 cut(s)	255, 291, 294
FspBI	CTAG	3 cut(s)	303, 320, 404
GlaI	GCGC	2 cut(s)	40, 116
GluI	GCNGC	3 cut(s)	255, 291, 294
HaeII	RGCGCY	1 cut(s)	118
HaeIII	GGCC	1 cut(s)	248
HhaI	GCGC	2 cut(s)	41, 117
Hin1II	CATG	2 cut(s)	397, 546
Hin6I	GCGC	2 cut(s)	39, 115
HinP1I	GCGC	2 cut(s)	39, 115
HinfI	GANTC	1 cut(s)	139
HphI	GGTGA	1 cut(s)	434
Hpy188III	TCNNGA	3 cut(s)	110, 404, 543
HpyAV	CCTTC	3 cut(s)	163, 169, 300
HpyCH4III	ACNGT	4 cut(s)	122, 367, 386, 503
HpyCH4V	TGCA	5 cut(s)	149, 238, 257, 293, 349
HpyF10VI	GCNNNNNNNGC	5 cut(s)	254, 263, 290, 299, 341
HpyF3I	CTNAG	1 cut(s)	465
Hsp92II	CATG	2 cut(s)	397, 546
HspAI	GCGC	2 cut(s)	39, 115
Ksp22I	TGATCA	1 cut(s)	430
Kzo9I	GATC	2 cut(s)	400, 430
LmnI	GCTCC	2 cut(s)	88, 525
LpnPI	CCDG	7 cut(s)	83, 262, 326, 353, 405, 472, 477
Lsp1109I	GCAGC	3 cut(s)	241, 277, 305
LweI	GCATC	1 cut(s)	50
MaeI	CTAG	3 cut(s)	303, 320, 404
MaeIII	GTNAC	2 cut(s)	62, 422
MalI	GATC	2 cut(s)	402, 432
MboI	GATC	2 cut(s)	400, 430
MboII	GAAGA	3 cut(s)	233, 272, 410
MflI	RGATCY	1 cut(s)	400
MhlI	GDGCHC	1 cut(s)	85
MluCI	AATT	1 cut(s)	31
MnlI	CCTC	8 cut(s)	67, 87, 117, 186, 190, 204, 238, 445
MseI	TTAA	3 cut(s)	30, 134, 162
MspA1I	CMGCKG	1 cut(s)	296
MspR9I	CCNGG	1 cut(s)	341
MvaI	CCWGG	1 cut(s)	341
MwoI	GCNNNNNNNGC	5 cut(s)	254, 263, 290, 299, 341
NdeII	GATC	2 cut(s)	400, 430
NlaIII	CATG	2 cut(s)	397, 546
NmeAIII	GCCGAG	1 cut(s)	268
NmuCI	GTSAC	2 cut(s)	62, 422
PagI	TCATGA	1 cut(s)	542
PfeI	GAWTC	1 cut(s)	139
PkrI	GCNGC	3 cut(s)	256, 292, 295
Psp6I	CCWGG	1 cut(s)	339
PspGI	CCWGG	1 cut(s)	339
PstI	CTGCAG	2 cut(s)	259, 295
PstNI	CAGNNNCTG	1 cut(s)	290
PsuI	RGATCY	1 cut(s)	400
PvuII	CAGCTG	1 cut(s)	296
SaqAI	TTAA	3 cut(s)	30, 134, 162
SatI	GCNGC	3 cut(s)	255, 291, 294
Sau3AI	GATC	2 cut(s)	400, 430
ScrFI	CCNGG	1 cut(s)	341
SduI	GDGCHC	1 cut(s)	85
SetI	ASST	8 cut(s)	102, 130, 256, 268, 292, 298, 304, 486
SfaNI	GCATC	1 cut(s)	50
SfcI	CTRYAG	3 cut(s)	255, 291, 502
SmlI	CTYRAG	1 cut(s)	108
SmoI	CTYRAG	1 cut(s)	108
Sse9I	AATT	1 cut(s)	31
SspI	AATATT	1 cut(s)	159
SspMI	CTAG	3 cut(s)	303, 320, 404
StyD4I	CCNGG	1 cut(s)	339
TaaI	ACNGT	4 cut(s)	122, 367, 386, 503
TaqI	TCGA	2 cut(s)	268, 450
TasI	AATT	1 cut(s)	31
TfiI	GAWTC	1 cut(s)	139
Tru1I	TTAA	3 cut(s)	30, 134, 162
Tru9I	TTAA	3 cut(s)	30, 134, 162
TseFI	GTSAC	2 cut(s)	62, 422
TseI	GCWGC	3 cut(s)	254, 290, 293
Tsp45I	GTSAC	2 cut(s)	62, 422
TspDTI	ATGAA	4 cut(s)	17, 382, 464, 531
XbaI	TCTAGA	1 cut(s)	403
XspI	CTAG	3 cut(s)	303, 320, 404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.