Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002714

Physical Location & Seq

Genomic Coordinates Reverse (-)

59846623 .. 59848254

Gene Structure 1632 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004496

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGCCGACAAATTTTCGTTGCCAAAAGCCAGAATTGGAGAGAAGTGATCTTGGTGATTCTGAAATTGGCAAAGTCCTGAGACCACCTGAGAGGCAGGTGTCCCTTGAAAAGCTCTACCGCGCAGCTGTACTGAGGAATCGGTTTGCAGACACAATATTTAAAGCCAAAGAGAAGGCACGTGAAAAGAAAAAGCACGCTTGCAAGCCGGGGGCAGAGCTGCAGAAGAGGCTCGGAAAAAGGCTGAAGCAGAAGCTGCAGCTGAAGCTAGAAGGCAAAGGGAATTGGAGAGAGAAGCTGCACGGCAGGCATTGCAAATGGGAAGCTGTAATCCCTTGGAGCAACTTGGGTTTATTCATGAAGGCGGATGATGATGTAGAAATAGAGGAGGAAGAAATTGATCCTCCCAAGAATTTTACAGAACTAGCAAACAATGTTGACGAAGTTGAGGAGAGACCTTCAAACGAAGCTGAAGTGGTACCTTCAAAAGGATTTGATGTTGAAGAGGGACCTTCAAACGAGGTTGATGTTGAAAAGGGACCTGGGAATGATATTGGAGAGGGACCGGGGAATGATTTGGGACAAGGACCGGGAGGATCAGAAAATCATGTTGAAGAGGTTTCTGCAAATGATGTTGAAGAGGGAACAGAAAATCATGTTGAAGAGACAGCAAATCATGTTGGTGAGAGAACTGCAAATGAGGTTGAAGATGTCGAAGATGGAGAGATTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0008150 GO:0009266 GO:0009267 GO:0009409 GO:0009605 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0033993 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051365 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0080090 GO:0097305 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

244

Amino Acids

27.22

Weight (kDa)

4.83

Isoelectric Point (pI)

39.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63320 AT5G63320 AT5G63320
fragaria_vesca	FvH4_2g09340 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g15310 FvH4_7g03961
malus_domestica	MD06G1147900.v1.1 MD14G1162200.v1.1
prunus_persica	Prupe.5G154800_v2.0.a1
pyrus_communis	pycom06g13720 pycom06g13730 pycom14g13510 pycom72g00010
rosa_chinensis	RchiOBHm_Chr7g0190781
rosa_laevigata	RLG00000004496 RLG00000004499
rosa_multiflora	Rmu_co8422347.1_g000001 Rmu_sc0002819.1_g000007
rosa_roxburghii	Rroxscaffold_3G00264320
rosa_rugosa	Rorug06G0506700 Rorug06G0506700 Rorug06G0506700 Rorug06G0506800
rosa_samantha	Rh7AG113500 Rh7BG116000 Rh7CG118600 Rh7DG117500
rosa_wichuraiana	Rw7G009910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	85
Acc36I	ACCTGC	1 cut(s)	85
Acc65I	GGTACC	1 cut(s)	475
AccB1I	GGYRCC	1 cut(s)	475
AccII	CGCG	1 cut(s)	120
AciI	CCGC	2 cut(s)	118, 362
AclWI	GGATC	2 cut(s)	392, 601
AcsI	RAATTY	2 cut(s)	10, 409
AcuI	CTGAAG	3 cut(s)	263, 281, 489
AcvI	CACGTG	1 cut(s)	179
AfaI	GTAC	2 cut(s)	129, 477
AfiI	CCNNNNNNNGG	1 cut(s)	485
AjnI	CCWGG	1 cut(s)	538
AluBI	AGCT	9 cut(s)	112, 125, 217, 253, 259, 265, 295, 323, 467
AluI	AGCT	9 cut(s)	112, 125, 217, 253, 259, 265, 295, 323, 467
Alw26I	GTCTC	3 cut(s)	73, 445, 656
AlwI	GGATC	2 cut(s)	392, 601
AlwNI	CAGNNNCTG	1 cut(s)	253
ApeKI	GCWGC	5 cut(s)	122, 217, 253, 256, 295
ApoI	RAATTY	2 cut(s)	10, 409
Asp718I	GGTACC	1 cut(s)	475
AspLEI	GCGC	1 cut(s)	122
AspS9I	GGNCC	4 cut(s)	506, 536, 560, 584
AsuC2I	CCSGG	3 cut(s)	207, 564, 588
AsuHPI	GGTGA	2 cut(s)	65, 692
AvaII	GGWCC	4 cut(s)	506, 536, 560, 584
BanI	GGYRCC	1 cut(s)	475
BbrPI	CACGTG	1 cut(s)	179
BbvI	GCAGC	5 cut(s)	134, 204, 240, 268, 282
BccI	CCATC	1 cut(s)	710
BceAI	ACGGC	1 cut(s)	316
BciT130I	CCWGG	1 cut(s)	540
BcnI	CCSGG	3 cut(s)	207, 564, 588
BcoDI	GTCTC	3 cut(s)	73, 445, 656
BfaI	CTAG	2 cut(s)	266, 422
BfmI	CTRYAG	2 cut(s)	218, 254
BfuAI	ACCTGC	1 cut(s)	85
BisI	GCNGC	5 cut(s)	123, 218, 254, 257, 296
BlsI	GCNGC	5 cut(s)	124, 219, 255, 258, 297
Bme1390I	CCNGG	4 cut(s)	207, 540, 564, 588
Bme18I	GGWCC	4 cut(s)	506, 536, 560, 584
BmgT120I	GGNCC	4 cut(s)	506, 536, 560, 584
BmiI	GGNNCC	4 cut(s)	477, 507, 537, 561
BmrFI	CCNGG	4 cut(s)	207, 540, 564, 588
BpuMI	CCSGG	3 cut(s)	207, 564, 588
BsaAI	YACGTR	1 cut(s)	179
BsaI	GGTCTC	2 cut(s)	73, 445
BsaJI	CCNNGG	4 cut(s)	206, 332, 539, 563
Bsc4I	CCNNNNNNNGG	1 cut(s)	485
Bse3DI	GCAATG	1 cut(s)	307
BseBI	CCWGG	1 cut(s)	540
BseDI	CCNNGG	4 cut(s)	206, 332, 539, 563
BseGI	GGATG	1 cut(s)	370
BseLI	CCNNNNNNNGG	1 cut(s)	485
BseMI	GCAATG	1 cut(s)	307
BseMII	CTCAG	3 cut(s)	68, 78, 122
BseRI	GAGGAG	2 cut(s)	398, 461
BseXI	GCAGC	5 cut(s)	134, 204, 240, 268, 282
BsgI	GTGCAG	1 cut(s)	281
Bsh1236I	CGCG	1 cut(s)	120
BshNI	GGYRCC	1 cut(s)	475
BsiSI	CCGG	3 cut(s)	206, 563, 587
BslFI	GGGAC	5 cut(s)	85, 519, 549, 573, 591
BslI	CCNNNNNNNGG	1 cut(s)	485
BsmAI	GTCTC	3 cut(s)	73, 445, 656
BsmFI	GGGAC	5 cut(s)	85, 519, 549, 573, 591
Bso31I	GGTCTC	2 cut(s)	73, 445
Bsp143I	GATC	3 cut(s)	46, 397, 593
BspACI	CCGC	2 cut(s)	118, 362
BspCNI	CTCAG	3 cut(s)	69, 79, 123
BspFNI	CGCG	1 cut(s)	120
BspHI	TCATGA	1 cut(s)	354
BspLI	GGNNCC	4 cut(s)	477, 507, 537, 561
BspMAI	CTGCAG	2 cut(s)	222, 258
BspMI	ACCTGC	1 cut(s)	85
BspPI	GGATC	2 cut(s)	392, 601
BspT107I	GGYRCC	1 cut(s)	475
BspTNI	GGTCTC	2 cut(s)	73, 445
BsrDI	GCAATG	1 cut(s)	307
BssECI	CCNNGG	4 cut(s)	206, 332, 539, 563
BssMI	GATC	3 cut(s)	46, 397, 593
BssT1I	CCWWGG	1 cut(s)	332
Bst2UI	CCWGG	1 cut(s)	540
Bst6I	CTCTTC	5 cut(s)	218, 495, 606, 630, 654
BstAPI	GCANNNNNTGC	2 cut(s)	253, 309
BstBAI	YACGTR	1 cut(s)	179
BstC8I	GCNNGC	4 cut(s)	195, 199, 203, 305
BstDEI	CTNAG	3 cut(s)	77, 87, 131
BstENI	CCTNNNNNAGG	1 cut(s)	483
BstF5I	GGATG	1 cut(s)	370
BstFNI	CGCG	1 cut(s)	120
BstHHI	GCGC	1 cut(s)	122
BstKTI	GATC	3 cut(s)	49, 400, 596
BstMAI	GTCTC	3 cut(s)	73, 445, 656
BstMBI	GATC	3 cut(s)	46, 397, 593
BstMWI	GCNNNNNNNGC	5 cut(s)	226, 253, 262, 304, 309
BstNI	CCWGG	1 cut(s)	540
BstSCI	CCNGG	4 cut(s)	205, 538, 562, 586
BstSFI	CTRYAG	2 cut(s)	218, 254
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	5 cut(s)	134, 204, 240, 268, 282
BtsCI	GGATG	1 cut(s)	370
BveI	ACCTGC	1 cut(s)	85
Cac8I	GCNNGC	4 cut(s)	195, 199, 203, 305
CaiI	CAGNNNCTG	1 cut(s)	253
CciI	TCATGA	1 cut(s)	354
CfoI	GCGC	1 cut(s)	122
Cfr13I	GGNCC	4 cut(s)	506, 536, 560, 584
Csp6I	GTAC	2 cut(s)	128, 476
CviAII	CATG	4 cut(s)	355, 605, 653, 674
CviQI	GTAC	2 cut(s)	128, 476
DdeI	CTNAG	3 cut(s)	77, 87, 131
DpnI	GATC	3 cut(s)	48, 399, 595
DpnII	GATC	3 cut(s)	46, 397, 593
DraI	TTTAAA	1 cut(s)	160
Eam1104I	CTCTTC	5 cut(s)	218, 495, 606, 630, 654
EarI	CTCTTC	5 cut(s)	218, 495, 606, 630, 654
EciI	GGCGGA	1 cut(s)	377
Eco130I	CCWWGG	1 cut(s)	332
Eco31I	GGTCTC	2 cut(s)	73, 445
Eco47I	GGWCC	4 cut(s)	506, 536, 560, 584
Eco57I	CTGAAG	3 cut(s)	263, 281, 489
Eco72I	CACGTG	1 cut(s)	179
EcoNI	CCTNNNNNAGG	1 cut(s)	483
EcoO109I	RGGNCCY	2 cut(s)	506, 536
EcoRII	CCWGG	1 cut(s)	538
EcoT14I	CCWWGG	1 cut(s)	332
ErhI	CCWWGG	1 cut(s)	332
FaeI	CATG	4 cut(s)	358, 608, 656, 677
FaiI	YATR	4 cut(s)	356, 606, 654, 675
FaqI	GGGAC	5 cut(s)	85, 519, 549, 573, 591
FatI	CATG	4 cut(s)	354, 604, 652, 673
Fnu4HI	GCNGC	5 cut(s)	123, 218, 254, 257, 296
FokI	GGATG	1 cut(s)	377
Fsp4HI	GCNGC	5 cut(s)	123, 218, 254, 257, 296
FspBI	CTAG	2 cut(s)	266, 422
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	5 cut(s)	123, 218, 254, 257, 296
HapII	CCGG	3 cut(s)	206, 563, 587
HhaI	GCGC	1 cut(s)	122
Hin1II	CATG	4 cut(s)	358, 608, 656, 677
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HinfI	GANTC	2 cut(s)	56, 136
HpaII	CCGG	3 cut(s)	206, 563, 587
HphI	GGTGA	2 cut(s)	65, 692
Hpy166II	GTNNAC	1 cut(s)	436
Hpy188I	TCNGA	3 cut(s)	61, 233, 598
Hpy188III	TCNNGA	2 cut(s)	76, 355
Hpy8I	GTNNAC	1 cut(s)	436
HpyAV	CCTTC	6 cut(s)	166, 263, 352, 465, 489, 519
HpyCH4IV	ACGT	1 cut(s)	178
HpyCH4V	TGCA	8 cut(s)	146, 201, 220, 256, 298, 312, 623, 692
HpyF10VI	GCNNNNNNNGC	5 cut(s)	226, 253, 262, 304, 309
HpyF3I	CTNAG	3 cut(s)	77, 87, 131
HpySE526I	ACGT	1 cut(s)	178
Hsp92II	CATG	4 cut(s)	358, 608, 656, 677
HspAI	GCGC	1 cut(s)	120
KpnI	GGTACC	1 cut(s)	479
Kzo9I	GATC	3 cut(s)	46, 397, 593
LmnI	GCTCC	1 cut(s)	336
Lsp1109I	GCAGC	5 cut(s)	134, 204, 240, 268, 282
MaeI	CTAG	2 cut(s)	266, 422
MaeII	ACGT	1 cut(s)	178
MalI	GATC	3 cut(s)	48, 399, 595
MboI	GATC	3 cut(s)	46, 397, 593
MboII	GAAGA	8 cut(s)	235, 401, 512, 623, 647, 671, 716, 725
MluCI	AATT	6 cut(s)	10, 32, 63, 280, 393, 409
MseI	TTAA	1 cut(s)	159
MslI	CAYNNNNRTG	1 cut(s)	678
MspA1I	CMGCKG	2 cut(s)	125, 259
MspI	CCGG	3 cut(s)	206, 563, 587
MspR9I	CCNGG	4 cut(s)	207, 540, 564, 588
MvaI	CCWGG	1 cut(s)	540
MvnI	CGCG	1 cut(s)	120
MwoI	GCNNNNNNNGC	5 cut(s)	226, 253, 262, 304, 309
NciI	CCSGG	3 cut(s)	207, 564, 588
NdeII	GATC	3 cut(s)	46, 397, 593
NlaIII	CATG	4 cut(s)	358, 608, 656, 677
NlaIV	GGNNCC	4 cut(s)	477, 507, 537, 561
PagI	TCATGA	1 cut(s)	354
PaqCI	CACCTGC	1 cut(s)	85
PfeI	GAWTC	2 cut(s)	56, 136
PkrI	GCNGC	5 cut(s)	124, 219, 255, 258, 297
PmaCI	CACGTG	1 cut(s)	179
PmlI	CACGTG	1 cut(s)	179
Ppu21I	YACGTR	1 cut(s)	179
PpuMI	RGGWCCY	2 cut(s)	506, 536
Psp5II	RGGWCCY	2 cut(s)	506, 536
Psp6I	CCWGG	1 cut(s)	538
PspCI	CACGTG	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	538
PspN4I	GGNNCC	4 cut(s)	477, 507, 537, 561
PspPI	GGNCC	4 cut(s)	506, 536, 560, 584
PspPPI	RGGWCCY	2 cut(s)	506, 536
PstI	CTGCAG	2 cut(s)	222, 258
PstNI	CAGNNNCTG	1 cut(s)	253
PvuII	CAGCTG	2 cut(s)	125, 259
RsaI	GTAC	2 cut(s)	129, 477
RsaNI	GTAC	2 cut(s)	128, 476
RseI	CAYNNNNRTG	1 cut(s)	678
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	5 cut(s)	123, 218, 254, 257, 296
Sau3AI	GATC	3 cut(s)	46, 397, 593
Sau96I	GGNCC	4 cut(s)	506, 536, 560, 584
ScrFI	CCNGG	4 cut(s)	207, 540, 564, 588
SfcI	CTRYAG	2 cut(s)	218, 254
SinI	GGWCC	4 cut(s)	506, 536, 560, 584
SmiMI	CAYNNNNRTG	1 cut(s)	678
Sse9I	AATT	6 cut(s)	10, 32, 63, 280, 393, 409
SsiI	CCGC	2 cut(s)	118, 362
SspI	AATATT	1 cut(s)	156
SspMI	CTAG	2 cut(s)	266, 422
StyD4I	CCNGG	4 cut(s)	205, 538, 562, 586
StyI	CCWWGG	1 cut(s)	332
TaiI	ACGT	1 cut(s)	181
TaqI	TCGA	1 cut(s)	711
TasI	AATT	6 cut(s)	10, 32, 63, 280, 393, 409
TatI	WGTACW	1 cut(s)	127
TfiI	GAWTC	2 cut(s)	56, 136
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TseI	GCWGC	5 cut(s)	122, 217, 253, 256, 295
TspDTI	ATGAA	2 cut(s)	343, 371
VpaK11BI	GGWCC	4 cut(s)	506, 536, 560, 584
XagI	CCTNNNNNAGG	1 cut(s)	483
XapI	RAATTY	2 cut(s)	10, 409
XspI	CTAG	2 cut(s)	266, 422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.