Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002714

Physical Location & Seq

Genomic Coordinates Forward (+)

8680160 .. 8686700

Gene Structure 6541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG116000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1950 bp

ATGGCACCTACTGTTCCAATAGACTTCACTGGACAGAAACAATCAATGATGGGGAAGTCACGCAAGTATTCAAAAGGGCAGCTATCTGGTTTTGTGCCGGATTATCGTCACGCTGTTGAGACCATGGGGGAATCAGAAGGGTTTGGAAGCTCAGGACGGGTGGACGCAGAAATGACAGCTTCGGAAGATTCGTGTGCGCCTTCTAAAAGGAAATGCATTAGTTTGAATGTTGATGGTTATGATAGTTTTGGGTTGCCTATGCAAGTGCTTCAGCTGTCAAGAATGTCTCGGACTGAAAGGAAGGATTTAGAAGTGAGGCTGAATTTGGAGCTGGAACAGGTCCGGGACCTTCAGAAGAAAATTGCAGCTATGAGTTCAGCTATTGTGTTATCCCCATCTAGTGATATTCGGAGTTGCAGTGATGGGAAAACCAGACCTCCAGTCGAGGCTTACCATAGACCGTCTGAACCAACTGCGCCGCAGGGTAAGAAACGAGCTCCTCCTGGGCGTAATGGTTCACGCAACAAAAAGAGCTTATCTGCGCATGTGGAGTCCGTGAAGCCAGTTGCCGCTTCAAATGCTCAGTTGATGAAACAATGTGAGGGTGTGCTAAATCTGTTGATGAAACATGCATATGCTTGGGTTTTCAAACATCCTGTAGACGTGGTGAAGTTGAATATTCCGGATTATTTTACTGTCATTAAGCATCCAATGGATTTGGGCACTGTGAAGAGCAAGATGACTTCTGGTGGATACTCTAATCCATTAAGTTTTGCTGCTGATGTGCGGCTTACATTCTCAAATGCAATGACTTACAATCCACCTGGAAATGATGTACATATTATGGCTGAGACGCTCAGTAAATATTTTGAACAGAAGTGGAAGGCAATAGAAAAGAAGCTTCCTGTTGATGTGGATCCTTTGCCTTTTAGAGCAGCTCTTCATACGGAAATCATAGAAACTGCTACACCTATGCCACCCTCAAAGAAGAAGAAAACTATACCAAATGATAGTAGCTTCAAGCCAGTCAAGCCTGTCAAGCCAGAAACTCTTAAATGCATCATGACTGAGGAGGAGAAGCATAAACTGACCGAGGAGGTGGATTCGTTGCTGGGAGAATTGCCTGAAAGCATTATTGATTTCTTAAAGGAGCATAGTGGTGAAGGGCAAACCAGTGAGGATGAGATTGAGATTGACTTTGAGGTTCTCAGTGATGATACTTTATTTGCATTGCGGAAGCTTGTTGATGAATATCTGCTGGATAAAGAGAAAAGGCAGGAGAAAAATGAACCTTGTGAGATGGAGATCCTTAATGAGCCGGGATTTAGCAACTCTTCACTGCATCCATGTAAAGGCAATGACATGGTTGATGAGGATGTGGATATTGTTGGTGGAAACGATGCTCCTATATCAAGCTTCCCTCCTGTAGAGATTGAGAAAGATGCAGCTCATAGAAACAGTAAATTCAGTAGCTCAAGTAGCTCCAGTAGTGAATCAGGCTCTTCGTCTAGTGATTCTGACTCTGCTAGTTCTTCAGAAAGTGAATCACGTGTTCCTAAAGCTTCACCTGCATTTGGTGGAGGAAAGGAAAAGTTTGGTTCAGGAGCAAATTCAGATCAAAAGAGAAGTGATCTTGGTGATTCTGAAATTGGCAAGGATCCAATCAATGGGGTTGTCCCAGTTGAGCAGAAATCCCCGTCTAAACCAGTTTCTGTCGAGGAGGGTGAACGACAAGAGGAGGAGAGTGCTCCACCTGAGAGGCAGGTCTCCCCTGAAAAACTCTACCGCGCAGCTGTACTGAGGAATCGGTTTGCAGACACAATATTTAAAGCCAAAGAGAAGGCACTTGAAAAGGGTGATAAGTTGGATCCAGAAAAATTGCGAATTGAGAGAGAGGAACTTGAAAGGCTGCGTAAAGAAGGTTTGGCTTTCTATAGTTTAGTTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0008150 GO:0009266 GO:0009267 GO:0009409 GO:0009605 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0033993 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051365 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0080090 GO:0097305 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

649

Amino Acids

71.63

Weight (kDa)

5.59

Isoelectric Point (pI)

57.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromodomain	PF00439	200 - 284	1.4e-18	Bromodomain
BET	PF17035	355 - 416	3e-16	Bromodomain extra-terminal - transcription regulation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63320 AT5G63320 AT5G63320
fragaria_vesca	FvH4_2g09340 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g15310 FvH4_7g03961
malus_domestica	MD06G1147900.v1.1 MD14G1162200.v1.1
prunus_persica	Prupe.5G154800_v2.0.a1
pyrus_communis	pycom06g13720 pycom06g13730 pycom14g13510 pycom72g00010
rosa_chinensis	RchiOBHm_Chr7g0190781
rosa_laevigata	RLG00000004496 RLG00000004499
rosa_multiflora	Rmu_co8422347.1_g000001 Rmu_sc0002819.1_g000007
rosa_roxburghii	Rroxscaffold_3G00264320
rosa_rugosa	Rorug06G0506700 Rorug06G0506700 Rorug06G0506700 Rorug06G0506800
rosa_samantha	Rh7AG113500 Rh7BG116000 Rh7CG118600 Rh7DG117500
rosa_wichuraiana	Rw7G009910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1576
Acc16I	TGCGCA	1 cut(s)	543
Acc36I	ACCTGC	2 cut(s)	1576, 1753
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	1667
AccI	GTMKAC	1 cut(s)	660
AccII	CGCG	1 cut(s)	1788
AccIII	TCCGGA	1 cut(s)	682
AciI	CCGC	5 cut(s)	479, 570, 787, 1234, 1786
AclWI	GGATC	7 cut(s)	911, 924, 1300, 1652, 1665, 1862, 1875
AcsI	RAATTY	3 cut(s)	322, 1463, 1609
AcuI	CTGAAG	3 cut(s)	254, 335, 1518
AcvI	CACGTG	1 cut(s)	1550
AfaI	GTAC	2 cut(s)	837, 1797
AfiI	CCNNNNNNNGG	3 cut(s)	1352, 1574, 1667
AflIII	ACRYGT	1 cut(s)	1549
AgsI	TTSAA	9 cut(s)	72, 226, 576, 649, 676, 872, 1021, 1850, 1904
AhdI	GACNNNNNGTC	1 cut(s)	440
AjiI	CACGTC	1 cut(s)	664
AjnI	CCWGG	2 cut(s)	502, 823
Alw21I	GWGCWC	2 cut(s)	499, 1750
Alw26I	GTCTC	4 cut(s)	113, 291, 845, 1771
AlwI	GGATC	7 cut(s)	911, 924, 1300, 1652, 1665, 1862, 1875
AlwNI	CAGNNNCTG	1 cut(s)	1712
Aor13HI	TCCGGA	1 cut(s)	682
ApeKI	GCWGC	7 cut(s)	79, 365, 776, 935, 1445, 1790, 1909
ApoI	RAATTY	3 cut(s)	322, 1463, 1609
AspLEI	GCGC	4 cut(s)	199, 478, 544, 1790
AspS9I	GGNCC	2 cut(s)	340, 346
AsuC2I	CCSGG	2 cut(s)	344, 1320
AsuHPI	GGTGA	6 cut(s)	679, 1172, 1557, 1649, 1736, 1868
AvaII	GGWCC	2 cut(s)	340, 346
BaeGI	GKGCMC	1 cut(s)	725
BamHI	GGATCC	3 cut(s)	916, 1657, 1867
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	499
BbrPI	CACGTG	1 cut(s)	1550
Bbv12I	GWGCWC	2 cut(s)	499, 1750
BbvI	GCAGC	7 cut(s)	91, 377, 763, 947, 1457, 1802, 1896
BccI	CCATC	5 cut(s)	43, 227, 403, 416, 1294
BciT130I	CCWGG	2 cut(s)	504, 825
BciVI	GTATCC	1 cut(s)	746
BcnI	CCSGG	2 cut(s)	344, 1320
BcoDI	GTCTC	4 cut(s)	113, 291, 845, 1771
BfaI	CTAG	3 cut(s)	399, 1509, 1527
BfmI	CTRYAG	3 cut(s)	657, 1425, 1933
BfuAI	ACCTGC	2 cut(s)	1576, 1753
BfuI	GTATCC	1 cut(s)	746
Bme1390I	CCNGG	4 cut(s)	344, 504, 825, 1320
Bme18I	GGWCC	2 cut(s)	340, 346
BmeRI	GACNNNNNGTC	1 cut(s)	440
BmgBI	CACGTC	1 cut(s)	664
BmgT120I	GGNCC	2 cut(s)	340, 346
BmiI	GGNNCC	5 cut(s)	6, 347, 918, 1659, 1869
BmrFI	CCNGG	4 cut(s)	344, 504, 825, 1320
BmrI	ACTGGG	1 cut(s)	1673
BmsI	GCATC	5 cut(s)	715, 1068, 1351, 1390, 1432
BmuI	ACTGGG	1 cut(s)	1673
BpmI	CTGGAG	2 cut(s)	423, 1468
Bpu10I	CCTNAGC	1 cut(s)	151
BpuEI	CTTGAG	1 cut(s)	1459
BpuMI	CCSGG	2 cut(s)	344, 1320
BsaAI	YACGTR	1 cut(s)	1550
BsaBI	GATNNNNATC	3 cut(s)	915, 1251, 1304
BsaI	GGTCTC	2 cut(s)	113, 1771
BsaJI	CCNNGG	3 cut(s)	123, 503, 1092
BsaWI	WCCGGW	1 cut(s)	682
BsaXI	ACNNNNNCTCC	4 cut(s)	403, 421, 433, 451
Bsc4I	CCNNNNNNNGG	3 cut(s)	1352, 1574, 1667
Bse1I	ACTGG	8 cut(s)	34, 440, 563, 1025, 1173, 1485, 1679, 1706
Bse3DI	GCAATG	3 cut(s)	813, 1229, 1363
Bse8I	GATNNNNATC	3 cut(s)	915, 1251, 1304
BseAI	TCCGGA	1 cut(s)	682
BseBI	CCWGG	2 cut(s)	504, 825
BseDI	CCNNGG	3 cut(s)	123, 503, 1092
BseGI	GGATG	5 cut(s)	652, 706, 1186, 1342, 1381
BseJI	GATNNNNATC	3 cut(s)	915, 1251, 1304
BseLI	CCNNNNNNNGG	3 cut(s)	1352, 1574, 1667
BseMI	GCAATG	3 cut(s)	813, 1229, 1363
BseMII	CTCAG	8 cut(s)	165, 596, 840, 871, 1059, 1222, 1746, 1790
BseNI	ACTGG	8 cut(s)	34, 440, 563, 1025, 1173, 1485, 1679, 1706
BseRI	GAGGAG	7 cut(s)	489, 1085, 1088, 1109, 1733, 1751, 1754
BseSI	GKGCMC	1 cut(s)	725
BseXI	GCAGC	7 cut(s)	91, 377, 763, 947, 1457, 1802, 1896
BseYI	CCCAGC	1 cut(s)	1111
Bsh1236I	CGCG	1 cut(s)	1788
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	2 cut(s)	499, 1750
BsiSI	CCGG	4 cut(s)	98, 343, 683, 1319
BslFI	GGGAC	2 cut(s)	359, 1661
BslI	CCNNNNNNNGG	3 cut(s)	1352, 1574, 1667
BsmAI	GTCTC	4 cut(s)	113, 291, 845, 1771
BsmBI	CGTCTC	1 cut(s)	845
BsmFI	GGGAC	2 cut(s)	359, 1661
Bso31I	GGTCTC	2 cut(s)	113, 1771
Bsp1286I	GDGCHC	3 cut(s)	499, 725, 1750
Bsp13I	TCCGGA	1 cut(s)	682
Bsp1407I	TGTACA	1 cut(s)	835
Bsp143I	GATC	6 cut(s)	916, 1305, 1615, 1630, 1657, 1867
Bsp19I	CCATGG	1 cut(s)	123
BspACI	CCGC	5 cut(s)	479, 570, 787, 1234, 1786
BspCNI	CTCAG	8 cut(s)	164, 595, 841, 870, 1060, 1221, 1747, 1791
BspEI	TCCGGA	1 cut(s)	682
BspFNI	CGCG	1 cut(s)	1788
BspHI	TCATGA	1 cut(s)	1062
BspLI	GGNNCC	5 cut(s)	6, 347, 918, 1659, 1869
BspMI	ACCTGC	2 cut(s)	1576, 1753
BspPI	GGATC	7 cut(s)	911, 924, 1300, 1652, 1665, 1862, 1875
BspQI	GCTCTTC	3 cut(s)	725, 945, 1507
BspT107I	GGYRCC	1 cut(s)	4
BspTNI	GGTCTC	2 cut(s)	113, 1771
BsrDI	GCAATG	3 cut(s)	813, 1229, 1363
BsrGI	TGTACA	1 cut(s)	835
BsrI	ACTGG	8 cut(s)	34, 440, 563, 1025, 1173, 1485, 1679, 1706
BssECI	CCNNGG	3 cut(s)	123, 503, 1092
BssMI	GATC	6 cut(s)	916, 1305, 1615, 1630, 1657, 1867
BssT1I	CCWWGG	1 cut(s)	123
Bst2UI	CCWGG	2 cut(s)	504, 825
Bst4CI	ACNGT	5 cut(s)	13, 462, 697, 727, 1460
Bst6I	CTCTTC	4 cut(s)	725, 945, 1339, 1507
BstAUI	TGTACA	1 cut(s)	835
BstBAI	YACGTR	1 cut(s)	1550
BstDEI	CTNAG	8 cut(s)	151, 582, 849, 857, 1068, 1208, 1755, 1799
BstDSI	CCRYGG	1 cut(s)	123
BstF5I	GGATG	5 cut(s)	652, 706, 1186, 1342, 1381
BstFNI	CGCG	1 cut(s)	1788
BstHHI	GCGC	4 cut(s)	199, 478, 544, 1790
BstKTI	GATC	6 cut(s)	919, 1308, 1618, 1633, 1660, 1870
BstMAI	GTCTC	4 cut(s)	113, 291, 845, 1771
BstMBI	GATC	6 cut(s)	916, 1305, 1615, 1630, 1657, 1867
BstMWI	GCNNNNNNNGC	5 cut(s)	578, 1030, 1039, 1479, 1568
BstNI	CCWGG	2 cut(s)	504, 825
BstNSI	RCATGY	2 cut(s)	548, 632
BstSCI	CCNGG	4 cut(s)	342, 502, 823, 1318
BstSFI	CTRYAG	3 cut(s)	657, 1425, 1933
BstSLI	GKGCMC	1 cut(s)	725
BstUI	CGCG	1 cut(s)	1788
BstV1I	GCAGC	7 cut(s)	91, 377, 763, 947, 1457, 1802, 1896
BstX2I	RGATCY	4 cut(s)	916, 1305, 1657, 1867
BstYI	RGATCY	4 cut(s)	916, 1305, 1657, 1867
BsuI	GTATCC	1 cut(s)	746
BtgI	CCRYGG	1 cut(s)	123
BtrI	CACGTC	1 cut(s)	664
BtsCI	GGATG	5 cut(s)	652, 706, 1186, 1342, 1381
BtsI	GCAGTG	2 cut(s)	424, 1337
BtsIMutI	CAGTG	6 cut(s)	27, 424, 723, 1180, 1216, 1337
BveI	ACCTGC	2 cut(s)	1576, 1753
CaiI	CAGNNNCTG	1 cut(s)	1712
CciI	TCATGA	1 cut(s)	1062
CfoI	GCGC	4 cut(s)	199, 478, 544, 1790
Cfr13I	GGNCC	2 cut(s)	340, 346
CseI	GACGC	2 cut(s)	173, 862
Csp6I	GTAC	2 cut(s)	836, 1796
CviAII	CATG	6 cut(s)	124, 545, 629, 1063, 1347, 1363
CviQI	GTAC	2 cut(s)	836, 1796
DdeI	CTNAG	8 cut(s)	151, 582, 849, 857, 1068, 1208, 1755, 1799
DpnI	GATC	6 cut(s)	918, 1307, 1617, 1632, 1659, 1869
DpnII	GATC	6 cut(s)	916, 1305, 1615, 1630, 1657, 1867
DraI	TTTAAA	1 cut(s)	1828
DriI	GACNNNNNGTC	1 cut(s)	440
Eam1104I	CTCTTC	4 cut(s)	725, 945, 1339, 1507
Eam1105I	GACNNNNNGTC	1 cut(s)	440
EarI	CTCTTC	4 cut(s)	725, 945, 1339, 1507
Ecl136II	GAGCTC	1 cut(s)	497
Eco130I	CCWWGG	1 cut(s)	123
Eco24I	GRGCYC	1 cut(s)	499
Eco31I	GGTCTC	2 cut(s)	113, 1771
Eco47I	GGWCC	2 cut(s)	340, 346
Eco53kI	GAGCTC	1 cut(s)	497
Eco57I	CTGAAG	3 cut(s)	254, 335, 1518
Eco72I	CACGTG	1 cut(s)	1550
EcoICRI	GAGCTC	1 cut(s)	497
EcoO109I	RGGNCCY	1 cut(s)	346
EcoRII	CCWGG	2 cut(s)	502, 823
EcoT14I	CCWWGG	1 cut(s)	123
EcoT22I	ATGCAT	3 cut(s)	218, 634, 1061
EcoT38I	GRGCYC	1 cut(s)	499
ErhI	CCWWGG	1 cut(s)	123
Esp3I	CGTCTC	1 cut(s)	845
FaeI	CATG	6 cut(s)	127, 548, 632, 1066, 1350, 1366
FaqI	GGGAC	2 cut(s)	359, 1661
FatI	CATG	6 cut(s)	123, 544, 628, 1062, 1346, 1362
FauNDI	CATATG	1 cut(s)	634
FblI	GTMKAC	1 cut(s)	660
FokI	GGATG	5 cut(s)	639, 693, 1193, 1329, 1388
FriOI	GRGCYC	1 cut(s)	499
FspBI	CTAG	3 cut(s)	399, 1509, 1527
FspI	TGCGCA	1 cut(s)	543
GlaI	GCGC	4 cut(s)	198, 477, 543, 1789
GsaI	CCCAGC	1 cut(s)	1115
GsuI	CTGGAG	2 cut(s)	423, 1468
HapII	CCGG	4 cut(s)	98, 343, 683, 1319
HgaI	GACGC	2 cut(s)	173, 862
HhaI	GCGC	4 cut(s)	199, 478, 544, 1790
Hin1II	CATG	6 cut(s)	127, 548, 632, 1066, 1350, 1366
Hin6I	GCGC	4 cut(s)	197, 476, 542, 1788
HinP1I	GCGC	4 cut(s)	197, 476, 542, 1788
HindIII	AAGCTT	4 cut(s)	899, 1238, 1414, 1560
HpaII	CCGG	4 cut(s)	98, 343, 683, 1319
HphI	GGTGA	6 cut(s)	679, 1172, 1557, 1649, 1736, 1868
Hpy166II	GTNNAC	4 cut(s)	163, 518, 661, 1727
Hpy188III	TCNNGA	6 cut(s)	153, 279, 683, 1063, 1602, 1871
Hpy8I	GTNNAC	4 cut(s)	163, 518, 661, 1727
HpyAV	CCTTC	8 cut(s)	131, 210, 295, 359, 877, 1157, 1834, 1913
HpyCH4III	ACNGT	5 cut(s)	13, 462, 697, 727, 1460
HpyCH4IV	ACGT	2 cut(s)	663, 1549
HpyF10VI	GCNNNNNNNGC	5 cut(s)	578, 1030, 1039, 1479, 1568
HpyF3I	CTNAG	8 cut(s)	151, 582, 849, 857, 1068, 1208, 1755, 1799
HpySE526I	ACGT	2 cut(s)	663, 1549
Hsp92II	CATG	6 cut(s)	127, 548, 632, 1066, 1350, 1366
HspAI	GCGC	4 cut(s)	197, 476, 542, 1788
Kpn2I	TCCGGA	1 cut(s)	682
Kzo9I	GATC	6 cut(s)	916, 1305, 1615, 1630, 1657, 1867
LguI	GCTCTTC	3 cut(s)	725, 945, 1507
LmnI	GCTCC	7 cut(s)	328, 502, 1150, 1408, 1487, 1604, 1753
Lsp1109I	GCAGC	7 cut(s)	91, 377, 763, 947, 1457, 1802, 1896
LweI	GCATC	5 cut(s)	715, 1068, 1351, 1390, 1432
MaeI	CTAG	3 cut(s)	399, 1509, 1527
MaeII	ACGT	2 cut(s)	663, 1549
MaeIII	GTNAC	2 cut(s)	57, 107
MalI	GATC	6 cut(s)	918, 1307, 1617, 1632, 1659, 1869
MboI	GATC	6 cut(s)	916, 1305, 1615, 1630, 1657, 1867
MboII	GAAGA	9 cut(s)	197, 367, 742, 932, 1000, 1003, 1326, 1494, 1524
MflI	RGATCY	4 cut(s)	916, 1305, 1657, 1867
MhlI	GDGCHC	3 cut(s)	499, 725, 1750
MluCI	AATT	8 cut(s)	322, 360, 1118, 1463, 1609, 1647, 1877, 1884
MlyI	GAGTC	2 cut(s)	560, 1514
MmeI	TCCRAC	1 cut(s)	1845
Mph1103I	ATGCAT	3 cut(s)	218, 634, 1061
MroI	TCCGGA	1 cut(s)	682
MseI	TTAA	6 cut(s)	702, 767, 1053, 1145, 1311, 1827
MslI	CAYNNNNRTG	2 cut(s)	633, 1158
MspA1I	CMGCKG	2 cut(s)	274, 1793
MspI	CCGG	4 cut(s)	98, 343, 683, 1319
MspR9I	CCNGG	4 cut(s)	344, 504, 825, 1320
MvaI	CCWGG	2 cut(s)	504, 825
MvnI	CGCG	1 cut(s)	1788
MwoI	GCNNNNNNNGC	5 cut(s)	578, 1030, 1039, 1479, 1568
NciI	CCSGG	2 cut(s)	344, 1320
NcoI	CCATGG	1 cut(s)	123
NdeI	CATATG	1 cut(s)	634
NdeII	GATC	6 cut(s)	916, 1305, 1615, 1630, 1657, 1867
NlaIII	CATG	6 cut(s)	127, 548, 632, 1066, 1350, 1366
NlaIV	GGNNCC	5 cut(s)	6, 347, 918, 1659, 1869
NmuCI	GTSAC	2 cut(s)	57, 107
NsbI	TGCGCA	1 cut(s)	543
NsiI	ATGCAT	3 cut(s)	218, 634, 1061
NspI	RCATGY	2 cut(s)	548, 632
PagI	TCATGA	1 cut(s)	1062
PaqCI	CACCTGC	1 cut(s)	1576
PciSI	GCTCTTC	3 cut(s)	725, 945, 1507
PcsI	WCGNNNNNNNCGW	1 cut(s)	188
PfeI	GAWTC	8 cut(s)	131, 188, 1103, 1493, 1514, 1544, 1640, 1804
PflMI	CCANNNNNTGG	1 cut(s)	1667
PfoI	TCCNGGA	1 cut(s)	342
PleI	GAGTC	2 cut(s)	559, 1514
PmaCI	CACGTG	1 cut(s)	1550
PmlI	CACGTG	1 cut(s)	1550
PpsI	GAGTC	2 cut(s)	559, 1514
Ppu21I	YACGTR	1 cut(s)	1550
PpuMI	RGGWCCY	1 cut(s)	346
Psp124BI	GAGCTC	1 cut(s)	499
Psp5II	RGGWCCY	1 cut(s)	346
Psp6I	CCWGG	2 cut(s)	502, 823
PspCI	CACGTG	1 cut(s)	1550
PspFI	CCCAGC	1 cut(s)	1111
PspGI	CCWGG	2 cut(s)	502, 823
PspN4I	GGNNCC	5 cut(s)	6, 347, 918, 1659, 1869
PspPI	GGNCC	2 cut(s)	340, 346
PspPPI	RGGWCCY	1 cut(s)	346
PstNI	CAGNNNCTG	1 cut(s)	1712
PsuI	RGATCY	4 cut(s)	916, 1305, 1657, 1867
PvuII	CAGCTG	2 cut(s)	274, 1793
RsaI	GTAC	2 cut(s)	837, 1797
RsaNI	GTAC	2 cut(s)	836, 1796
RseI	CAYNNNNRTG	2 cut(s)	633, 1158
SacI	GAGCTC	1 cut(s)	499
SapI	GCTCTTC	3 cut(s)	725, 945, 1507
SaqAI	TTAA	6 cut(s)	702, 767, 1053, 1145, 1311, 1827
Sau3AI	GATC	6 cut(s)	916, 1305, 1615, 1630, 1657, 1867
Sau96I	GGNCC	2 cut(s)	340, 346
SchI	GAGTC	2 cut(s)	560, 1514
ScrFI	CCNGG	4 cut(s)	344, 504, 825, 1320
SduI	GDGCHC	3 cut(s)	499, 725, 1750
SfaNI	GCATC	5 cut(s)	715, 1068, 1351, 1390, 1432
SfcI	CTRYAG	3 cut(s)	657, 1425, 1933
SinI	GGWCC	2 cut(s)	340, 346
SmiMI	CAYNNNNRTG	2 cut(s)	633, 1158
SmlI	CTYRAG	1 cut(s)	1474
SmoI	CTYRAG	1 cut(s)	1474
Sse9I	AATT	8 cut(s)	322, 360, 1118, 1463, 1609, 1647, 1877, 1884
SsiI	CCGC	5 cut(s)	479, 570, 787, 1234, 1786
SspI	AATATT	3 cut(s)	679, 866, 1824
SspMI	CTAG	3 cut(s)	399, 1509, 1527
SstI	GAGCTC	1 cut(s)	499
StyD4I	CCNGG	4 cut(s)	342, 502, 823, 1318
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	5 cut(s)	13, 462, 697, 727, 1460
TaiI	ACGT	2 cut(s)	666, 1552
TaqI	TCGA	2 cut(s)	444, 1716
TaqII	GACCGA	1 cut(s)	1106
TasI	AATT	8 cut(s)	322, 360, 1118, 1463, 1609, 1647, 1877, 1884
TatI	WGTACW	2 cut(s)	835, 1795
TauI	GCSGC	3 cut(s)	481, 572, 790
TfiI	GAWTC	8 cut(s)	131, 188, 1103, 1493, 1514, 1544, 1640, 1804
Tru1I	TTAA	6 cut(s)	702, 767, 1053, 1145, 1311, 1827
Tru9I	TTAA	6 cut(s)	702, 767, 1053, 1145, 1311, 1827
TscAI	CASTG	6 cut(s)	34, 424, 730, 1180, 1216, 1344
TseFI	GTSAC	2 cut(s)	57, 107
TseI	GCWGC	7 cut(s)	79, 365, 776, 935, 1445, 1790, 1909
Tsp45I	GTSAC	2 cut(s)	57, 107
TspDTI	ATGAA	5 cut(s)	605, 638, 932, 1263, 1302
TspGWI	ACGGA	2 cut(s)	544, 962
TspRI	CASTG	6 cut(s)	34, 424, 730, 1180, 1216, 1344
Van91I	CCANNNNNTGG	1 cut(s)	1667
VpaK11BI	GGWCC	2 cut(s)	340, 346
XapI	RAATTY	3 cut(s)	322, 1463, 1609
XceI	RCATGY	2 cut(s)	548, 632
XmiI	GTMKAC	1 cut(s)	660
XspI	CTAG	3 cut(s)	399, 1509, 1527
Zsp2I	ATGCAT	3 cut(s)	218, 634, 1061

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.