Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0002714

Physical Location & Seq

Genomic Coordinates Forward (+)

29014123 .. 29020012

Gene Structure 5890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1147900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2508 bp

ATGGCACCAGCTGTTCCAATAGATTTCACTGGACAGAAAGAAAGGAAGTGTTTTCTTTCGCAGATGATGGGGAAGTCACGGAAGTACTCTAAAGGGCAGTTGTCTGGTTTTGTTCCAGATAACCGGCATGCTGTCGAGACAATGGCTGAATCGGAGGGGTTTGGAAGCTCAGGACGCGTCGACACAGAAATGACGGCTTCAGAGGATTCATGTGCGCCTAAAAGGAAATCCATTAGTTTGAATGTGGATGGTTATGATGGTTTGGGGGTGCCAATGCAAGTACTGCCATTGTCACGGATGTCGCGGTCAGAAAGGAAGGATTTGGAAATGAGGCTGCAATTGGAACTTGAACAGGTCCGGGTTCTTCAGAAGAGAATTGCTACTATGAATTCCATTGTTGCTGTACTATCCCCATCTAGTGATATTCGGAGTTGCAGTGATGGGAAAAAGAGACCTCCGCCTGACAGATATCAAAGATCATCCGAAATTTCTGCGCCTCAAGGTAAGAGAAAGGCTCCTCCGGGGCGTAATGGTGGCCGCACGAAGAAAAGCACGTCTGGTCCTGTGGAGCCATCAAGGCCAGTGGCTCCATCAACCACTTCAAATGCTATGTTGATGAAACAATGCGATCAATTGCTGACCCGCTTAATTAAACATCAGTTTGGTTGGGTTTTTGAGAATCCAGTTGATGTGGTGAAGTTGAACATACCAGATTATTTTACAGTCATTAAGCATCCAATGGATTTGGGCACTGTGCAGAGCAAGTTAAATTCAGGCGTGTACTCTTGTCCATTAGGGTTTGCTGCTGATGTACGGCTTACTTTCTCAAATGCTATGACTTACAATCCCCCTGGAAATGATGTGCACATTATGGCCGAGACCCTCAGTAAATATTTTGAGCAGAGATGGAAACCCATAGCAAAGAAGCTTCCTGTAGCGACTGGTGTGCAGTCTTTGCCTTCAAGAGCAAGACCGGCTGTTTGTGAAGAAACCAATCCTGCTGCCCCAATGCCACCCTTAAAAAAGATGAAAAGTACCCCTGTTGATACTGCTATCAAGCCTGAATGTCCTAAACGCATCTTGACTGTTGAGGAGAAGGTTAAACTGACTAAGGAGCTGGAGGATTTGCTGGGAGAATTGCCGGAAAATATTGTTAATTTCCTAAAAGAGCATAGTAGTAGTGAAGGGCAAACTGACGAGGATGAGATTGAGATCGACCTTGATGCCCTTAGTGACGATACCTTGTTTGCCTTACGGAAGCTTATGGATGGCCATCTGCTGGAGAAACAGAAAAGGCAGGAGAAAGTTGAACCTTGTGAAATGGAGATTATTAATGAGTCGGGATTTAGCAACTCATCAATGCAACCCTGCAAAGGCAATGATCCAATTGATGAGGATGTGGATATTATTGGTGGGAATGACGCTCCAATTTCAAGCTTTCCTCCAGTAGAGATAGAGAAAGATGCAGCTCGTAAAAACAGTAAATGCAGTAGCTCAAGTAGCTCCAGCAGTGATTCAGGCTCTTCATCTAGTGATTCTGACTCTGGCAGTTCTTCAGAAAGGGATTCAGATGATGCTAAAGCTCCAACCTCTATTGGGGGAGGAAAGGAAAAATTGGGTACTGGAGCAAATACAGATCAGAAGAGAAGTGATATTGGGGATTCAGAAATTGGAAATCAATCAATAAATAGAGTGGCCCCACTTGAGCAGGATCCCCCATCTAAACCAATTCCTGTTGAGGAGGGTGGACATAGAGAGGGGGAGAGTGCTCCATCTGAGAGGCAAGTCTCCCCCGATAAGCTCTACCGTGCAGCCGTATTGAGGAATAGGTTTGCTGACACAATACTAAAAGCCCGAGAGAAGGCACTAGAAAAGGGTGAAAAGTTGGATCCTGAAAAATTGCGAATTGAAAGAGAGGAACTTGAAAAGCGGCAAAAAGAAGAGAAAGCACGTTTACAAGCTGAAGCCAAAGCTGCAGAAGAGGCTCGAAAGAAGGCTGAAGCAGAAGCTGCAGCCGAAGCTAAGAGGCAGAGGGAACTAGAGAGAGAAGCTGCACGTCAGGCATTGCAAATGATAGAAAAGACTGTTGAAATTAATGAGAATAGTCGGTTTCTGGAAGATCTAGAAATGTTTAGGGCTGTTGATGAACATGTGACAAATTTCACGGAGGAGACCAGCCCGGAGCACATTGAAGACGAGCTTGCCCGGCTTGGTAGCTTCAAACTACAGGGAAGTAGTAATCCCTTAGAGCAACTTGGTTTGTTCATGAAACTGGATGATGATATAGAAGAAGAAGAAATCGAACCTCCCCAGAGTGCCCCAAAACCAGAATCAGCACTTGAACCAGAACCTGAGCCAGAAAGTGAACTTGAACCAGAACCTGAGCCAGAAAGGGAACCTGAACCTGAACCTGAACTGGAAGGGGAACCTGAACCAGAACCAGAACCAGAACCAGAACCAGTAAATGATGCTGAACCAAATGACGTTGAAGAAGGGGAGATCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0008150 GO:0009266 GO:0009267 GO:0009409 GO:0009605 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0033993 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051365 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0080090 GO:0097305 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

836

Amino Acids

92.34

Weight (kDa)

4.83

Isoelectric Point (pI)

65.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromodomain	PF00439	209 - 293	1.2e-19	Bromodomain
BET	PF17035	361 - 423	2.9e-15	Bromodomain extra-terminal - transcription regulation
Trypan_PARP	PF05887	759 - 821	1e-05	Procyclic acidic repetitive protein (PARP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63320 AT5G63320 AT5G63320
fragaria_vesca	FvH4_2g09340 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g15310 FvH4_7g03961
malus_domestica	MD06G1147900.v1.1 MD14G1162200.v1.1
prunus_persica	Prupe.5G154800_v2.0.a1
pyrus_communis	pycom06g13720 pycom06g13730 pycom14g13510 pycom72g00010
rosa_chinensis	RchiOBHm_Chr7g0190781
rosa_laevigata	RLG00000004496 RLG00000004499
rosa_multiflora	Rmu_co8422347.1_g000001 Rmu_sc0002819.1_g000007
rosa_roxburghii	Rroxscaffold_3G00264320
rosa_rugosa	Rorug06G0506700 Rorug06G0506700 Rorug06G0506700 Rorug06G0506800
rosa_samantha	Rh7AG113500 Rh7BG116000 Rh7CG118600 Rh7DG117500
rosa_wichuraiana	Rw7G009910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	4, 268
AccB7I	CCANNNNNTGG	1 cut(s)	1279
AccI	GTMKAC	1 cut(s)	180
AccII	CGCG	2 cut(s)	177, 304
AciI	CCGC	5 cut(s)	304, 458, 538, 643, 1930
AclWI	GGATC	5 cut(s)	1376, 1706, 1719, 1883, 1896
AcoI	YGGCCR	3 cut(s)	535, 873, 1270
AcsI	RAATTY	4 cut(s)	388, 486, 769, 2158
AcuI	CTGAAG	5 cut(s)	183, 350, 1539, 1983, 2019
AfaI	GTAC	7 cut(s)	86, 282, 405, 782, 813, 1036, 1621
AfiI	CCNNNNNNNGG	5 cut(s)	1279, 1373, 1596, 1821, 1861
AflIII	ACRYGT	2 cut(s)	175, 2149
AjiI	CACGTC	2 cut(s)	555, 2057
AjnI	CCWGG	1 cut(s)	850
Alw21I	GWGCWC	3 cut(s)	867, 1771, 2187
Alw26I	GTCTC	5 cut(s)	131, 445, 872, 1792, 2165
Alw44I	GTGCAC	1 cut(s)	863
AlwI	GGATC	5 cut(s)	1376, 1706, 1719, 1883, 1896
AlwNI	CAGNNNCTG	3 cut(s)	2009, 2351, 2381
Ama87I	CYCGRG	1 cut(s)	1854
AoxI	GGCC	5 cut(s)	535, 578, 873, 1270, 1695
ApaLI	GTGCAC	1 cut(s)	863
ApeKI	GCWGC	9 cut(s)	334, 803, 1001, 1466, 1811, 1973, 2009, 2012, 2051
ApoI	RAATTY	4 cut(s)	388, 486, 769, 2158
ArsI	GACNNNNNNTTYG	2 cut(s)	963, 995
AseI	ATTAAT	2 cut(s)	1332, 2094
AspLEI	GCGC	2 cut(s)	217, 496
AspS9I	GGNCC	3 cut(s)	355, 560, 1696
AsuC2I	CCSGG	4 cut(s)	359, 522, 2180, 2206
AsuHPI	GGTGA	2 cut(s)	706, 1889
AvaI	CYCGRG	1 cut(s)	1854
AvaII	GGWCC	2 cut(s)	355, 560
BaeGI	GKGCMC	3 cut(s)	752, 867, 2320
BalI	TGGCCA	1 cut(s)	1272
BamHI	GGATCC	2 cut(s)	1711, 1888
BanI	GGYRCC	2 cut(s)	4, 268
BbsI	GAAGAC	1 cut(s)	2199
Bbv12I	GWGCWC	3 cut(s)	867, 1771, 2187
BbvI	GCAGC	9 cut(s)	321, 790, 988, 1478, 1823, 1960, 1996, 2024, 2038
BceAI	ACGGC	3 cut(s)	210, 830, 1799
BcgI	CGANNNNNNTGC	6 cut(s)	473, 507, 928, 962, 1205, 1239
BciT130I	CCWGG	1 cut(s)	852
BcnI	CCSGG	4 cut(s)	359, 522, 2180, 2206
BcoDI	GTCTC	5 cut(s)	131, 445, 872, 1792, 2165
BfaI	CTAG	5 cut(s)	417, 1530, 1868, 2039, 2123
BfmI	CTRYAG	4 cut(s)	933, 1974, 2010, 2225
BglI	GCCNNNNNGGC	1 cut(s)	577
BglII	AGATCT	1 cut(s)	2119
BmcAI	AGTACT	2 cut(s)	86, 282
Bme1390I	CCNGG	5 cut(s)	359, 522, 852, 2180, 2206
Bme18I	GGWCC	2 cut(s)	355, 560
BmeT110I	CYCGRG	1 cut(s)	1854
BmgBI	CACGTC	2 cut(s)	555, 2057
BmgT120I	GGNCC	3 cut(s)	355, 560, 1696
BmrFI	CCNGG	5 cut(s)	359, 522, 852, 2180, 2206
BmsI	GCATC	6 cut(s)	742, 1086, 1213, 1453, 1564, 2458
BpiI	GAAGAC	1 cut(s)	2199
BplI	GAGNNNNNCTC	2 cut(s)	499, 531
BpmI	CTGGAG	5 cut(s)	1139, 1301, 1428, 1489, 1644
Bpu10I	CCTNAGC	3 cut(s)	169, 2352, 2382
BpuEI	CTTGAG	3 cut(s)	483, 1480, 1724
BpuMI	CCSGG	4 cut(s)	359, 522, 2180, 2206
Bsa29I	ATCGAT	1 cut(s)	2502
BsaBI	GATNNNNATC	2 cut(s)	1211, 1272
BsaI	GGTCTC	3 cut(s)	445, 872, 2165
BsaJI	CCNNGG	2 cut(s)	521, 850
BsaXI	ACNNNNNCTCC	2 cut(s)	421, 451
Bsc4I	CCNNNNNNNGG	5 cut(s)	1279, 1373, 1596, 1821, 1861
Bse118I	RCCGGY	2 cut(s)	123, 973
Bse1I	ACTGG	9 cut(s)	34, 581, 683, 946, 1445, 1627, 2277, 2421, 2459
Bse3DI	GCAATG	2 cut(s)	1384, 2063
Bse8I	GATNNNNATC	2 cut(s)	1211, 1272
BseBI	CCWGG	1 cut(s)	852
BseCI	ATCGAT	1 cut(s)	2502
BseDI	CCNNGG	2 cut(s)	521, 850
BseGI	GGATG	8 cut(s)	253, 303, 479, 733, 1207, 1273, 1402, 2281
BseJI	GATNNNNATC	2 cut(s)	1211, 1272
BseLI	CCNNNNNNNGG	5 cut(s)	1279, 1373, 1596, 1821, 1861
BseMI	GCAATG	2 cut(s)	1384, 2063
BseMII	CTCAG	5 cut(s)	183, 898, 1767, 2343, 2373
BseNI	ACTGG	9 cut(s)	34, 581, 683, 946, 1445, 1627, 2277, 2421, 2459
BseRI	GAGGAG	4 cut(s)	507, 1106, 1754, 2183
BseSI	GKGCMC	3 cut(s)	752, 867, 2320
BseXI	GCAGC	9 cut(s)	321, 790, 988, 1478, 1823, 1960, 1996, 2024, 2038
BseYI	CCCAGC	1 cut(s)	1129
BsgI	GTGCAG	4 cut(s)	776, 968, 1830, 2037
Bsh1236I	CGCG	2 cut(s)	177, 304
BshFI	GGCC	5 cut(s)	537, 580, 875, 1272, 1697
BshNI	GGYRCC	2 cut(s)	4, 268
BshVI	ATCGAT	1 cut(s)	2502
BsiHKAI	GWGCWC	3 cut(s)	867, 1771, 2187
BsiHKCI	CYCGRG	1 cut(s)	1854
BsiSI	CCGG	7 cut(s)	124, 358, 521, 974, 1142, 2180, 2206
BslI	CCNNNNNNNGG	5 cut(s)	1279, 1373, 1596, 1821, 1861
BsmAI	GTCTC	5 cut(s)	131, 445, 872, 1792, 2165
BsnI	GGCC	5 cut(s)	537, 580, 875, 1272, 1697
Bso31I	GGTCTC	3 cut(s)	445, 872, 2165
BsoBI	CYCGRG	1 cut(s)	1854
Bsp1286I	GDGCHC	5 cut(s)	752, 867, 1771, 2187, 2320
Bsp143I	GATC	9 cut(s)	476, 628, 1212, 1381, 1636, 1711, 1888, 2119, 2499
BspACI	CCGC	5 cut(s)	304, 458, 538, 643, 1930
BspANI	GGCC	5 cut(s)	537, 580, 875, 1272, 1697
BspCNI	CTCAG	5 cut(s)	182, 897, 1768, 2344, 2374
BspDI	ATCGAT	1 cut(s)	2502
BspFNI	CGCG	2 cut(s)	177, 304
BspHI	TCATGA	1 cut(s)	2265
BspMAI	CTGCAG	2 cut(s)	1978, 2014
BspPI	GGATC	5 cut(s)	1376, 1706, 1719, 1883, 1896
BspQI	GCTCTTC	1 cut(s)	1528
BspT107I	GGYRCC	2 cut(s)	4, 268
BspTNI	GGTCTC	3 cut(s)	445, 872, 2165
BsrDI	GCAATG	2 cut(s)	1384, 2063
BsrFI	RCCGGY	2 cut(s)	123, 973
BsrI	ACTGG	9 cut(s)	34, 581, 683, 946, 1445, 1627, 2277, 2421, 2459
BssAI	RCCGGY	2 cut(s)	123, 973
BssECI	CCNNGG	2 cut(s)	521, 850
BssMI	GATC	9 cut(s)	476, 628, 1212, 1381, 1636, 1711, 1888, 2119, 2499
Bst2UI	CCWGG	1 cut(s)	852
Bst4CI	ACNGT	6 cut(s)	724, 754, 1087, 1481, 1808, 2086
Bst6I	CTCTTC	5 cut(s)	365, 1528, 1637, 1935, 1974
BstAPI	GCANNNNNTGC	3 cut(s)	283, 955, 2009
BstC8I	GCNNGC	2 cut(s)	129, 2202
BstDEI	CTNAG	9 cut(s)	169, 884, 1110, 1229, 1776, 2022, 2245, 2352, 2382
BstF5I	GGATG	8 cut(s)	253, 303, 479, 733, 1207, 1273, 1402, 2281
BstFNI	CGCG	2 cut(s)	177, 304
BstHHI	GCGC	2 cut(s)	217, 496
BstKTI	GATC	9 cut(s)	479, 631, 1215, 1384, 1639, 1714, 1891, 2122, 2502
BstMAI	GTCTC	5 cut(s)	131, 445, 872, 1792, 2165
BstMBI	GATC	9 cut(s)	476, 628, 1212, 1381, 1636, 1711, 1888, 2119, 2499
BstNI	CCWGG	1 cut(s)	852
BstNSI	RCATGY	2 cut(s)	131, 2153
BstSCI	CCNGG	5 cut(s)	357, 520, 850, 2178, 2204
BstSFI	CTRYAG	4 cut(s)	933, 1974, 2010, 2225
BstSLI	GKGCMC	3 cut(s)	752, 867, 2320
BstUI	CGCG	2 cut(s)	177, 304
BstV1I	GCAGC	9 cut(s)	321, 790, 988, 1478, 1823, 1960, 1996, 2024, 2038
BstV2I	GAAGAC	1 cut(s)	2199
BstX2I	RGATCY	3 cut(s)	1711, 1888, 2119
BstYI	RGATCY	3 cut(s)	1711, 1888, 2119
Bsu15I	ATCGAT	1 cut(s)	2502
BsuRI	GGCC	5 cut(s)	537, 580, 875, 1272, 1697
BsuTUI	ATCGAT	1 cut(s)	2502
BtrI	CACGTC	2 cut(s)	555, 2057
BtsCI	GGATG	8 cut(s)	253, 303, 479, 733, 1207, 1273, 1402, 2281
BtsI	GCAGTG	2 cut(s)	442, 1516
BtsIMutI	CAGTG	5 cut(s)	27, 442, 588, 750, 1516
Cac8I	GCNNGC	2 cut(s)	129, 2202
CaiI	CAGNNNCTG	3 cut(s)	2009, 2351, 2381
CciI	TCATGA	1 cut(s)	2265
CfoI	GCGC	2 cut(s)	217, 496
Cfr10I	RCCGGY	2 cut(s)	123, 973
Cfr13I	GGNCC	3 cut(s)	355, 560, 1696
ClaI	ATCGAT	1 cut(s)	2502
CseI	GACGC	3 cut(s)	166, 183, 1430
Csp6I	GTAC	7 cut(s)	85, 281, 404, 781, 812, 1035, 1620
CspCI	CAANNNNNGTGG	2 cut(s)	564, 599
CviAII	CATG	4 cut(s)	128, 210, 2150, 2266
CviQI	GTAC	7 cut(s)	85, 281, 404, 781, 812, 1035, 1620
DdeI	CTNAG	9 cut(s)	169, 884, 1110, 1229, 1776, 2022, 2245, 2352, 2382
DpnI	GATC	9 cut(s)	478, 630, 1214, 1383, 1638, 1713, 1890, 2121, 2501
DpnII	GATC	9 cut(s)	476, 628, 1212, 1381, 1636, 1711, 1888, 2119, 2499
EaeI	YGGCCR	3 cut(s)	535, 873, 1270
Eam1104I	CTCTTC	5 cut(s)	365, 1528, 1637, 1935, 1974
EarI	CTCTTC	5 cut(s)	365, 1528, 1637, 1935, 1974
EciI	GGCGGA	1 cut(s)	447
Eco31I	GGTCTC	3 cut(s)	445, 872, 2165
Eco32I	GATATC	1 cut(s)	470
Eco47I	GGWCC	2 cut(s)	355, 560
Eco57I	CTGAAG	5 cut(s)	183, 350, 1539, 1983, 2019
Eco88I	CYCGRG	1 cut(s)	1854
EcoRI	GAATTC	1 cut(s)	388
EcoRII	CCWGG	1 cut(s)	850
EcoRV	GATATC	1 cut(s)	470
FaeI	CATG	4 cut(s)	131, 213, 2153, 2269
FalI	AAGNNNNNCTT	2 cut(s)	2184, 2216
FatI	CATG	4 cut(s)	127, 209, 2149, 2265
FauI	CCCGC	1 cut(s)	650
FblI	GTMKAC	1 cut(s)	180
FokI	GGATG	8 cut(s)	260, 310, 466, 720, 1214, 1280, 1409, 2288
FspBI	CTAG	5 cut(s)	417, 1530, 1868, 2039, 2123
GlaI	GCGC	2 cut(s)	216, 495
GsaI	CCCAGC	1 cut(s)	1133
GsuI	CTGGAG	5 cut(s)	1139, 1301, 1428, 1489, 1644
HaeIII	GGCC	5 cut(s)	537, 580, 875, 1272, 1697
HapII	CCGG	7 cut(s)	124, 358, 521, 974, 1142, 2180, 2206
HgaI	GACGC	3 cut(s)	166, 183, 1430
HhaI	GCGC	2 cut(s)	217, 496
Hin1II	CATG	4 cut(s)	131, 213, 2153, 2269
Hin6I	GCGC	2 cut(s)	215, 494
HinP1I	GCGC	2 cut(s)	215, 494
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HindIII	AAGCTT	3 cut(s)	926, 1259, 1435
HpaII	CCGG	7 cut(s)	124, 358, 521, 974, 1142, 2180, 2206
HphI	GGTGA	2 cut(s)	706, 1889
Hpy166II	GTNNAC	6 cut(s)	181, 781, 865, 1748, 1955, 2366
Hpy8I	GTNNAC	6 cut(s)	181, 781, 865, 1748, 1955, 2366
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	8 cut(s)	310, 969, 1090, 1178, 1855, 1987, 2414, 2486
HpyCH4III	ACNGT	6 cut(s)	724, 754, 1087, 1481, 1808, 2086
HpyCH4IV	ACGT	4 cut(s)	554, 1951, 2056, 2484
HpyF3I	CTNAG	9 cut(s)	169, 884, 1110, 1229, 1776, 2022, 2245, 2352, 2382
HpySE526I	ACGT	4 cut(s)	554, 1951, 2056, 2484
Hsp92II	CATG	4 cut(s)	131, 213, 2153, 2269
HspAI	GCGC	2 cut(s)	215, 494
Kzo9I	GATC	9 cut(s)	476, 628, 1212, 1381, 1636, 1711, 1888, 2119, 2499
LguI	GCTCTTC	1 cut(s)	1528
Lsp1109I	GCAGC	9 cut(s)	321, 790, 988, 1478, 1823, 1960, 1996, 2024, 2038
LweI	GCATC	6 cut(s)	742, 1086, 1213, 1453, 1564, 2458
MaeI	CTAG	5 cut(s)	417, 1530, 1868, 2039, 2123
MaeII	ACGT	4 cut(s)	554, 1951, 2056, 2484
MaeIII	GTNAC	4 cut(s)	75, 291, 1232, 2152
MalI	GATC	9 cut(s)	478, 630, 1214, 1383, 1638, 1713, 1890, 2121, 2501
MboI	GATC	9 cut(s)	476, 628, 1212, 1381, 1636, 1711, 1888, 2119, 2499
MfeI	CAATTG	3 cut(s)	338, 632, 1386
MflI	RGATCY	3 cut(s)	1711, 1888, 2119
MhlI	GDGCHC	5 cut(s)	752, 867, 1771, 2187, 2320
MlsI	TGGCCA	1 cut(s)	1272
MluI	ACGCGT	1 cut(s)	175
MluNI	TGGCCA	1 cut(s)	1272
MlyI	GAGTC	2 cut(s)	1346, 1535
MmeI	TCCRAC	2 cut(s)	1610, 1866
Mox20I	TGGCCA	1 cut(s)	1272
MscI	TGGCCA	1 cut(s)	1272
MseI	TTAA	9 cut(s)	647, 651, 729, 767, 1019, 1101, 1155, 1332, 2094
MslI	CAYNNNNRTG	1 cut(s)	188
Msp20I	TGGCCA	1 cut(s)	1272
MspA1I	CMGCKG	1 cut(s)	11
MspI	CCGG	7 cut(s)	124, 358, 521, 974, 1142, 2180, 2206
MspR9I	CCNGG	5 cut(s)	359, 522, 852, 2180, 2206
MunI	CAATTG	3 cut(s)	338, 632, 1386
MvaI	CCWGG	1 cut(s)	852
MvnI	CGCG	2 cut(s)	177, 304
NciI	CCSGG	4 cut(s)	359, 522, 2180, 2206
NdeII	GATC	9 cut(s)	476, 628, 1212, 1381, 1636, 1711, 1888, 2119, 2499
NlaIII	CATG	4 cut(s)	131, 213, 2153, 2269
NmeAIII	GCCGAG	1 cut(s)	901
NmuCI	GTSAC	4 cut(s)	75, 291, 1232, 2152
NspI	RCATGY	2 cut(s)	131, 2153
PacI	TTAATTAA	1 cut(s)	651
PaeI	GCATGC	1 cut(s)	131
PagI	TCATGA	1 cut(s)	2265
PciI	ACATGT	1 cut(s)	2149
PciSI	GCTCTTC	1 cut(s)	1528
PfeI	GAWTC	8 cut(s)	149, 206, 679, 1514, 1535, 1565, 1661, 2330
PflMI	CCANNNNNTGG	1 cut(s)	1279
PleI	GAGTC	2 cut(s)	1345, 1535
PpsI	GAGTC	2 cut(s)	1345, 1535
PscI	ACATGT	1 cut(s)	2149
PshBI	ATTAAT	2 cut(s)	1332, 2094
Psp6I	CCWGG	1 cut(s)	850
PspFI	CCCAGC	1 cut(s)	1129
PspGI	CCWGG	1 cut(s)	850
PspPI	GGNCC	3 cut(s)	355, 560, 1696
PstI	CTGCAG	2 cut(s)	1978, 2014
PstNI	CAGNNNCTG	3 cut(s)	2009, 2351, 2381
PsuI	RGATCY	3 cut(s)	1711, 1888, 2119
PvuII	CAGCTG	1 cut(s)	11
RsaI	GTAC	7 cut(s)	86, 282, 405, 782, 813, 1036, 1621
RsaNI	GTAC	7 cut(s)	85, 281, 404, 781, 812, 1035, 1620
RseI	CAYNNNNRTG	1 cut(s)	188
SalI	GTCGAC	1 cut(s)	179
SapI	GCTCTTC	1 cut(s)	1528
SaqAI	TTAA	9 cut(s)	647, 651, 729, 767, 1019, 1101, 1155, 1332, 2094
Sau3AI	GATC	9 cut(s)	476, 628, 1212, 1381, 1636, 1711, 1888, 2119, 2499
Sau96I	GGNCC	3 cut(s)	355, 560, 1696
ScaI	AGTACT	2 cut(s)	86, 282
SchI	GAGTC	2 cut(s)	1346, 1535
ScrFI	CCNGG	5 cut(s)	359, 522, 852, 2180, 2206
SduI	GDGCHC	5 cut(s)	752, 867, 1771, 2187, 2320
SfaNI	GCATC	6 cut(s)	742, 1086, 1213, 1453, 1564, 2458
SfcI	CTRYAG	4 cut(s)	933, 1974, 2010, 2225
SinI	GGWCC	2 cut(s)	355, 560
SmiMI	CAYNNNNRTG	1 cut(s)	188
SmlI	CTYRAG	3 cut(s)	498, 1495, 1703
SmoI	CTYRAG	3 cut(s)	498, 1495, 1703
SphI	GCATGC	1 cut(s)	131
SsiI	CCGC	5 cut(s)	304, 458, 538, 643, 1930
SspI	AATATT	2 cut(s)	893, 1150
SspMI	CTAG	5 cut(s)	417, 1530, 1868, 2039, 2123
StyD4I	CCNGG	5 cut(s)	357, 520, 850, 2178, 2204
TaaI	ACNGT	6 cut(s)	724, 754, 1087, 1481, 1808, 2086
TaiI	ACGT	4 cut(s)	557, 1954, 2059, 2487
TaqI	TCGA	6 cut(s)	135, 180, 1215, 1987, 2301, 2502
TatI	WGTACW	4 cut(s)	84, 280, 403, 780
TauI	GCSGC	2 cut(s)	540, 1933
TfiI	GAWTC	8 cut(s)	149, 206, 679, 1514, 1535, 1565, 1661, 2330
Tru1I	TTAA	9 cut(s)	647, 651, 729, 767, 1019, 1101, 1155, 1332, 2094
Tru9I	TTAA	9 cut(s)	647, 651, 729, 767, 1019, 1101, 1155, 1332, 2094
TscAI	CASTG	5 cut(s)	34, 442, 588, 757, 1516
TseFI	GTSAC	4 cut(s)	75, 291, 1232, 2152
TseI	GCWGC	9 cut(s)	334, 803, 1001, 1466, 1811, 1973, 2009, 2012, 2051
Tsp45I	GTSAC	4 cut(s)	75, 291, 1232, 2152
TspDTI	ATGAA	8 cut(s)	198, 401, 632, 1043, 1515, 2160, 2254, 2282
TspGWI	ACGGA	4 cut(s)	94, 310, 1270, 2180
TspRI	CASTG	5 cut(s)	34, 442, 588, 757, 1516
Van91I	CCANNNNNTGG	1 cut(s)	1279
VneI	GTGCAC	1 cut(s)	863
VpaK11BI	GGWCC	2 cut(s)	355, 560
VspI	ATTAAT	2 cut(s)	1332, 2094
XapI	RAATTY	4 cut(s)	388, 486, 769, 2158
XbaI	TCTAGA	1 cut(s)	2122
XceI	RCATGY	2 cut(s)	131, 2153
XmiI	GTMKAC	1 cut(s)	180
XspI	CTAG	5 cut(s)	417, 1530, 1868, 2039, 2123
ZrmI	AGTACT	2 cut(s)	86, 282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.