Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002714

Physical Location & Seq

Genomic Coordinates Forward (+)

62203095 .. 62204709

Gene Structure 1615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0506800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCTGCTGCTCTCGCTTCTTCACTAGCCTTATCGTGCTCCACACTCAGAGGTGGCTCCGATCCCTCAAAACCCAGGTTCCCTAATCTCTGCGCAAAGCCCACTAATTTGGGTTTAGCTGTTTCGCCTCACTCTCATTCTCGTAATCGCAAAACGTTGAGAATCTCGGCTACTGTCTCGGTCTCTAACCCGGAATTACGGACCGGTCCCGATGAGCTCGCTGCTTCTATTCTCTCCAAGGTGATAGATTCGGACAGAGGAGTTTTGCTGGAAAAGGAACAACATAAGGAGGTAGCTCAAGTGGCCGACGCATTGCAGAACTACTGTGTTAGTGAACCAGTGAAATGCCCTCTAATTTTCGGAGATTGGGATGTGCTGTACTGTTCAGTGCCAACATCGCCTGGGGGTGGCTATAGGAGTACACTGGGCCGTCTTGTTTTTAAAACAAAGGAGATGATTCAAGTTATTGAAGCTCCTGACATTGTTAAAAACAAGGTGTCCTTCTCTGCTTTTGGGTTCTTGGATGGAGAAGTCTCTTTAACAGGAAAGTTGAAGGCTCTGGATGATAAATGGGTTCAAGTTATTTTTGAGCCACCAGAATTGAAGGTTGGAGCTTTGGGGTTCCGATATGGCGGTGAAAGTGAGGTGAAACTCCAGATCACATATATAGATGAGAACGTCAGGCTGGGGAAAGGCTCTAGAGGTTCACTGTTTGTTTTCAGAAGACGAGGTAAATCTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0008150 GO:0009266 GO:0009267 GO:0009409 GO:0009605 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0033993 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051365 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0080090 GO:0097305 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

247

Amino Acids

26.8

Weight (kDa)

9.17

Isoelectric Point (pI)

33.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	74 - 200	5.4e-09	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63320 AT5G63320 AT5G63320
fragaria_vesca	FvH4_2g09340 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g15310 FvH4_7g03961
malus_domestica	MD06G1147900.v1.1 MD14G1162200.v1.1
prunus_persica	Prupe.5G154800_v2.0.a1
pyrus_communis	pycom06g13720 pycom06g13730 pycom14g13510 pycom72g00010
rosa_chinensis	RchiOBHm_Chr7g0190781
rosa_laevigata	RLG00000004496 RLG00000004499
rosa_multiflora	Rmu_co8422347.1_g000001 Rmu_sc0002819.1_g000007
rosa_roxburghii	Rroxscaffold_3G00264320
rosa_rugosa	Rorug06G0506700 Rorug06G0506700 Rorug06G0506700 Rorug06G0506800
rosa_samantha	Rh7AG113500 Rh7BG116000 Rh7CG118600 Rh7DG117500
rosa_wichuraiana	Rw7G009910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	94
AciI	CCGC	1 cut(s)	633
AclI	AACGTT	1 cut(s)	155
AclWI	GGATC	1 cut(s)	56
AcoI	YGGCCR	1 cut(s)	303
AfaI	GTAC	2 cut(s)	380, 421
AfiI	CCNNNNNNNGG	1 cut(s)	407
AgeI	ACCGGT	1 cut(s)	203
AgsI	TTSAA	5 cut(s)	461, 470, 553, 578, 604
AjnI	CCWGG	2 cut(s)	74, 400
AjuI	GAANNNNNNNTTGG	2 cut(s)	591, 623
AluBI	AGCT	5 cut(s)	119, 217, 296, 473, 614
AluI	AGCT	5 cut(s)	119, 217, 296, 473, 614
Alw21I	GWGCWC	2 cut(s)	41, 219
Alw26I	GTCTC	3 cut(s)	181, 187, 538
AlwI	GGATC	1 cut(s)	56
AoxI	GGCC	2 cut(s)	303, 427
ApeKI	GCWGC	3 cut(s)	5, 8, 221
AsiGI	ACCGGT	1 cut(s)	203
AspLEI	GCGC	1 cut(s)	95
AspS9I	GGNCC	3 cut(s)	201, 206, 427
AsuC2I	CCSGG	1 cut(s)	191
AsuHPI	GGTGA	3 cut(s)	253, 647, 658
AvaII	GGWCC	2 cut(s)	201, 206
BanII	GRGCYC	1 cut(s)	219
BbsI	GAAGAC	1 cut(s)	730
Bbv12I	GWGCWC	2 cut(s)	41, 219
BbvI	GCAGC	1 cut(s)	208
BccI	CCATC	1 cut(s)	518
BceAI	ACGGC	1 cut(s)	414
BciT130I	CCWGG	2 cut(s)	76, 402
BcnI	CCSGG	1 cut(s)	191
BcoDI	GTCTC	3 cut(s)	181, 187, 538
BfaI	CTAG	2 cut(s)	26, 699
BfmI	CTRYAG	1 cut(s)	412
BisI	GCNGC	3 cut(s)	6, 9, 222
BlsI	GCNGC	3 cut(s)	7, 10, 223
Bme1390I	CCNGG	3 cut(s)	76, 191, 402
Bme18I	GGWCC	2 cut(s)	201, 206
BmgT120I	GGNCC	3 cut(s)	201, 206, 427
BmiI	GGNNCC	4 cut(s)	58, 80, 208, 623
BmrFI	CCNGG	3 cut(s)	76, 191, 402
BmrI	ACTGGG	1 cut(s)	434
BmuI	ACTGGG	1 cut(s)	434
BpiI	GAAGAC	1 cut(s)	730
BpmI	CTGGAG	1 cut(s)	638
BpuEI	CTTGAG	1 cut(s)	282
BpuMI	CCSGG	1 cut(s)	191
BsaI	GGTCTC	1 cut(s)	187
BsaJI	CCNNGG	3 cut(s)	74, 237, 401
BsaWI	WCCGGW	1 cut(s)	203
Bsc4I	CCNNNNNNNGG	1 cut(s)	407
Bse118I	RCCGGY	1 cut(s)	203
Bse1I	ACTGG	2 cut(s)	338, 429
Bse3DI	GCAATG	1 cut(s)	311
BseBI	CCWGG	2 cut(s)	76, 402
BseDI	CCNNGG	3 cut(s)	74, 237, 401
BseGI	GGATG	3 cut(s)	376, 529, 568
BseLI	CCNNNNNNNGG	1 cut(s)	407
BseMI	GCAATG	1 cut(s)	311
BseMII	CTCAG	1 cut(s)	61
BseNI	ACTGG	2 cut(s)	338, 429
BseRI	GAGGAG	1 cut(s)	273
BseXI	GCAGC	1 cut(s)	208
BseYI	CCCAGC	1 cut(s)	685
BshFI	GGCC	2 cut(s)	305, 429
BshTI	ACCGGT	1 cut(s)	203
BsiHKAI	GWGCWC	2 cut(s)	41, 219
BsiSI	CCGG	2 cut(s)	191, 204
BslFI	GGGAC	1 cut(s)	192
BslI	CCNNNNNNNGG	1 cut(s)	407
BsmAI	GTCTC	3 cut(s)	181, 187, 538
BsmFI	GGGAC	1 cut(s)	192
BsnI	GGCC	2 cut(s)	305, 429
Bso31I	GGTCTC	1 cut(s)	187
Bsp1286I	GDGCHC	2 cut(s)	41, 219
Bsp143I	GATC	2 cut(s)	61, 657
BspACI	CCGC	1 cut(s)	633
BspANI	GGCC	2 cut(s)	305, 429
BspCNI	CTCAG	1 cut(s)	60
BspLI	GGNNCC	4 cut(s)	58, 80, 208, 623
BspPI	GGATC	1 cut(s)	56
BspTNI	GGTCTC	1 cut(s)	187
BsrDI	GCAATG	1 cut(s)	311
BsrFI	RCCGGY	1 cut(s)	203
BsrI	ACTGG	2 cut(s)	338, 429
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	3 cut(s)	74, 237, 401
BssMI	GATC	2 cut(s)	61, 657
BssT1I	CCWWGG	1 cut(s)	237
Bst2UI	CCWGG	2 cut(s)	76, 402
Bst4CI	ACNGT	4 cut(s)	175, 326, 383, 711
BstC8I	GCNNGC	1 cut(s)	219
BstDEI	CTNAG	1 cut(s)	47
BstF5I	GGATG	3 cut(s)	376, 529, 568
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	2 cut(s)	64, 660
BstMAI	GTCTC	3 cut(s)	181, 187, 538
BstMBI	GATC	2 cut(s)	61, 657
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 302, 397
BstNI	CCWGG	2 cut(s)	76, 402
BstSCI	CCNGG	3 cut(s)	74, 189, 400
BstSFI	CTRYAG	1 cut(s)	412
BstV1I	GCAGC	1 cut(s)	208
BstV2I	GAAGAC	1 cut(s)	730
BstXI	CCANNNNNNTGG	1 cut(s)	109
BsuRI	GGCC	2 cut(s)	305, 429
BtgZI	GCGATG	1 cut(s)	381
BtsCI	GGATG	3 cut(s)	376, 529, 568
BtsIMutI	CAGTG	4 cut(s)	345, 393, 422, 707
Cac8I	GCNNGC	1 cut(s)	219
CfoI	GCGC	1 cut(s)	95
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	3 cut(s)	201, 206, 427
CpoI	CGGWCCG	1 cut(s)	201
CseI	GACGC	1 cut(s)	317
Csp6I	GTAC	2 cut(s)	379, 420
CspAI	ACCGGT	1 cut(s)	203
CspCI	CAANNNNNGTGG	2 cut(s)	582, 617
CspI	CGGWCCG	1 cut(s)	201
CviQI	GTAC	2 cut(s)	379, 420
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	2 cut(s)	63, 659
DpnII	GATC	2 cut(s)	61, 657
DraI	TTTAAA	1 cut(s)	442
EaeI	YGGCCR	1 cut(s)	303
Ecl136II	GAGCTC	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	237
Eco24I	GRGCYC	1 cut(s)	219
Eco31I	GGTCTC	1 cut(s)	187
Eco47I	GGWCC	2 cut(s)	201, 206
Eco53kI	GAGCTC	1 cut(s)	217
EcoICRI	GAGCTC	1 cut(s)	217
EcoRII	CCWGG	2 cut(s)	74, 400
EcoT14I	CCWWGG	1 cut(s)	237
EcoT38I	GRGCYC	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	237
FaiI	YATR	6 cut(s)	285, 414, 630, 664, 666, 668
FalI	AAGNNNNNCTT	2 cut(s)	485, 517
FaqI	GGGAC	1 cut(s)	192
Fnu4HI	GCNGC	3 cut(s)	6, 9, 222
FokI	GGATG	3 cut(s)	383, 536, 575
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	3 cut(s)	6, 9, 222
FspBI	CTAG	2 cut(s)	26, 699
FspI	TGCGCA	1 cut(s)	94
GlaI	GCGC	1 cut(s)	94
GluI	GCNGC	3 cut(s)	6, 9, 222
GsaI	CCCAGC	1 cut(s)	689
GsuI	CTGGAG	1 cut(s)	638
HaeIII	GGCC	2 cut(s)	305, 429
HapII	CCGG	2 cut(s)	191, 204
HgaI	GACGC	1 cut(s)	317
HhaI	GCGC	1 cut(s)	95
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HinfI	GANTC	3 cut(s)	162, 248, 457
HpaII	CCGG	2 cut(s)	191, 204
HphI	GGTGA	3 cut(s)	253, 647, 658
Hpy166II	GTNNAC	3 cut(s)	335, 422, 707
Hpy188I	TCNGA	6 cut(s)	50, 61, 253, 362, 626, 722
Hpy188III	TCNNGA	5 cut(s)	209, 476, 560, 655, 699
Hpy8I	GTNNAC	3 cut(s)	335, 422, 707
Hpy99I	CGWCG	1 cut(s)	311
HpyAV	CCTTC	3 cut(s)	511, 547, 598
HpyCH4III	ACNGT	4 cut(s)	175, 326, 383, 711
HpyCH4IV	ACGT	2 cut(s)	155, 678
HpyCH4V	TGCA	1 cut(s)	316
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 302, 397
HpyF3I	CTNAG	1 cut(s)	47
HpySE526I	ACGT	2 cut(s)	155, 678
HspAI	GCGC	1 cut(s)	93
Kzo9I	GATC	2 cut(s)	61, 657
LmnI	GCTCC	4 cut(s)	44, 62, 478, 611
Lsp1109I	GCAGC	1 cut(s)	208
MaeI	CTAG	2 cut(s)	26, 699
MaeII	ACGT	2 cut(s)	155, 678
MalI	GATC	2 cut(s)	63, 659
MboI	GATC	2 cut(s)	61, 657
MboII	GAAGA	2 cut(s)	12, 735
MhlI	GDGCHC	2 cut(s)	41, 219
MluCI	AATT	5 cut(s)	106, 194, 354, 599, 739
MmeI	TCCRAC	1 cut(s)	589
MnlI	CCTC	9 cut(s)	44, 76, 138, 251, 283, 360, 637, 695, 722
MseI	TTAA	3 cut(s)	441, 486, 539
MspI	CCGG	2 cut(s)	191, 204
MspR9I	CCNGG	3 cut(s)	76, 191, 402
MvaI	CCWGG	2 cut(s)	76, 402
MwoI	GCNNNNNNNGC	3 cut(s)	14, 302, 397
NciI	CCSGG	1 cut(s)	191
NdeII	GATC	2 cut(s)	61, 657
NlaIV	GGNNCC	4 cut(s)	58, 80, 208, 623
NmeAIII	GCCGAG	1 cut(s)	146
NsbI	TGCGCA	1 cut(s)	94
PfeI	GAWTC	3 cut(s)	162, 248, 457
PinAI	ACCGGT	1 cut(s)	203
PkrI	GCNGC	3 cut(s)	7, 10, 223
Psp124BI	GAGCTC	1 cut(s)	219
Psp1406I	AACGTT	1 cut(s)	155
Psp6I	CCWGG	2 cut(s)	74, 400
PspFI	CCCAGC	1 cut(s)	685
PspGI	CCWGG	2 cut(s)	74, 400
PspN4I	GGNNCC	4 cut(s)	58, 80, 208, 623
PspPI	GGNCC	3 cut(s)	201, 206, 427
RsaI	GTAC	2 cut(s)	380, 421
RsaNI	GTAC	2 cut(s)	379, 420
Rsr2I	CGGWCCG	1 cut(s)	201
RsrII	CGGWCCG	1 cut(s)	201
SacI	GAGCTC	1 cut(s)	219
SaqAI	TTAA	3 cut(s)	441, 486, 539
SatI	GCNGC	3 cut(s)	6, 9, 222
Sau3AI	GATC	2 cut(s)	61, 657
Sau96I	GGNCC	3 cut(s)	201, 206, 427
ScrFI	CCNGG	3 cut(s)	76, 191, 402
SduI	GDGCHC	2 cut(s)	41, 219
SfcI	CTRYAG	1 cut(s)	412
SinI	GGWCC	2 cut(s)	201, 206
SmlI	CTYRAG	1 cut(s)	297
SmoI	CTYRAG	1 cut(s)	297
Sse9I	AATT	5 cut(s)	106, 194, 354, 599, 739
SsiI	CCGC	1 cut(s)	633
SspMI	CTAG	2 cut(s)	26, 699
SstI	GAGCTC	1 cut(s)	219
StyD4I	CCNGG	3 cut(s)	74, 189, 400
StyI	CCWWGG	1 cut(s)	237
TaaI	ACNGT	4 cut(s)	175, 326, 383, 711
TaiI	ACGT	2 cut(s)	158, 681
TaqII	GACCGA	1 cut(s)	169
TasI	AATT	5 cut(s)	106, 194, 354, 599, 739
TatI	WGTACW	2 cut(s)	378, 419
TfiI	GAWTC	3 cut(s)	162, 248, 457
Tru1I	TTAA	3 cut(s)	441, 486, 539
Tru9I	TTAA	3 cut(s)	441, 486, 539
TscAI	CASTG	4 cut(s)	345, 393, 429, 714
TseI	GCWGC	3 cut(s)	5, 8, 221
TspGWI	ACGGA	1 cut(s)	214
TspRI	CASTG	4 cut(s)	345, 393, 429, 714
VpaK11BI	GGWCC	2 cut(s)	201, 206
XbaI	TCTAGA	1 cut(s)	698
XspI	CTAG	2 cut(s)	26, 699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.