Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0002714

Physical Location & Seq

Genomic Coordinates Forward (+)

18616460 .. 18616966

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g13720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGCACCAGCTGTTCCAATAGATTTCACTGGACAGAAAGAAAGGAAGTGTTTTCTTTCGCAGATGATGGGGAAGTCGCGGAAGTACTCTAAAGGGCAGTTGTCTGGTTTTGTTCCGGATAACCGGCATGCTGTCGAGACAATGGCTGAATCGGAGGGGTTTGGAAGCTCAGGACGCGTCGACACAGAAATGACGGCTTCAGAGGATTCATGTGCGCCTAAAAGGAAATCCATTAGTTTGAACGTGGATGGTTATGATGGTTTTGGGGTGCCAATGCAAGTACTGCCATTGTCACGGATGTCGCGGTCAGAAAGGAAGGATTTGGAATTGAGGCTGCAATTGGAACTTGAACAGGTCCGGGTTCTTCAGAAGAGAATTGCTACTATGAATTCCATTGTTGCTGTACTATCCCCATCTAGTGATATTCGGAGTTGCAGTGATGGGAAAAAGAGACCTCCACCTGATAGATATCAAAGATCGATCCGAATTTTCTGCGCCTCAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0008150 GO:0009266 GO:0009267 GO:0009409 GO:0009605 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0033993 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051365 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0080090 GO:0097305 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

169

Amino Acids

18.76

Weight (kDa)

9.57

Isoelectric Point (pI)

61.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63320 AT5G63320 AT5G63320
fragaria_vesca	FvH4_2g09340 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g15310 FvH4_7g03961
malus_domestica	MD06G1147900.v1.1 MD14G1162200.v1.1
prunus_persica	Prupe.5G154800_v2.0.a1
pyrus_communis	pycom06g13720 pycom06g13730 pycom14g13510 pycom72g00010
rosa_chinensis	RchiOBHm_Chr7g0190781
rosa_laevigata	RLG00000004496 RLG00000004499
rosa_multiflora	Rmu_co8422347.1_g000001 Rmu_sc0002819.1_g000007
rosa_roxburghii	Rroxscaffold_3G00264320
rosa_rugosa	Rorug06G0506700 Rorug06G0506700 Rorug06G0506700 Rorug06G0506800
rosa_samantha	Rh7AG113500 Rh7BG116000 Rh7CG118600 Rh7DG117500
rosa_wichuraiana	Rw7G009910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	4, 268
AccI	GTMKAC	1 cut(s)	180
AccII	CGCG	3 cut(s)	79, 177, 304
AccIII	TCCGGA	1 cut(s)	115
AciI	CCGC	2 cut(s)	79, 304
AclWI	GGATC	1 cut(s)	475
AcsI	RAATTY	2 cut(s)	388, 486
AcuI	CTGAAG	2 cut(s)	183, 350
AfaI	GTAC	3 cut(s)	86, 282, 405
AflIII	ACRYGT	1 cut(s)	175
AgsI	TTSAA	2 cut(s)	241, 350
AluBI	AGCT	2 cut(s)	11, 168
AluI	AGCT	2 cut(s)	11, 168
Alw26I	GTCTC	2 cut(s)	131, 445
AlwI	GGATC	1 cut(s)	475
Aor13HI	TCCGGA	1 cut(s)	115
ApeKI	GCWGC	1 cut(s)	334
ApoI	RAATTY	2 cut(s)	388, 486
AspLEI	GCGC	2 cut(s)	217, 497
AspS9I	GGNCC	1 cut(s)	355
AsuC2I	CCSGG	1 cut(s)	359
AvaII	GGWCC	1 cut(s)	355
BanI	GGYRCC	2 cut(s)	4, 268
BbvI	GCAGC	1 cut(s)	321
BccI	CCATC	5 cut(s)	61, 242, 251, 421, 434
BceAI	ACGGC	1 cut(s)	210
BcgI	CGANNNNNNTGC	1 cut(s)	474
BcnI	CCSGG	1 cut(s)	359
BcoDI	GTCTC	2 cut(s)	131, 445
BfaI	CTAG	1 cut(s)	417
BisI	GCNGC	1 cut(s)	335
BlsI	GCNGC	1 cut(s)	336
BmcAI	AGTACT	2 cut(s)	86, 282
Bme1390I	CCNGG	1 cut(s)	359
Bme18I	GGWCC	1 cut(s)	355
BmgT120I	GGNCC	1 cut(s)	355
BmiI	GGNNCC	2 cut(s)	6, 270
BmrFI	CCNGG	1 cut(s)	359
Bpu10I	CCTNAGC	1 cut(s)	169
BpuEI	CTTGAG	1 cut(s)	484
BpuMI	CCSGG	1 cut(s)	359
Bsa29I	ATCGAT	1 cut(s)	479
BsaBI	GATNNNNATC	1 cut(s)	468
BsaI	GGTCTC	1 cut(s)	445
BsaWI	WCCGGW	1 cut(s)	115
BsaXI	ACNNNNNCTCC	2 cut(s)	421, 451
Bse118I	RCCGGY	1 cut(s)	123
Bse1I	ACTGG	1 cut(s)	34
Bse8I	GATNNNNATC	1 cut(s)	468
BseAI	TCCGGA	1 cut(s)	115
BseCI	ATCGAT	1 cut(s)	479
BseGI	GGATG	2 cut(s)	253, 303
BseJI	GATNNNNATC	1 cut(s)	468
BseMII	CTCAG	1 cut(s)	183
BseNI	ACTGG	1 cut(s)	34
BseXI	GCAGC	1 cut(s)	321
Bsh1236I	CGCG	3 cut(s)	79, 177, 304
BshNI	GGYRCC	2 cut(s)	4, 268
BshVI	ATCGAT	1 cut(s)	479
BsiSI	CCGG	3 cut(s)	116, 124, 358
BsmAI	GTCTC	2 cut(s)	131, 445
Bso31I	GGTCTC	1 cut(s)	445
Bsp13I	TCCGGA	1 cut(s)	115
Bsp143I	GATC	2 cut(s)	476, 480
BspACI	CCGC	2 cut(s)	79, 304
BspCNI	CTCAG	1 cut(s)	182
BspDI	ATCGAT	1 cut(s)	479
BspEI	TCCGGA	1 cut(s)	115
BspFNI	CGCG	3 cut(s)	79, 177, 304
BspLI	GGNNCC	2 cut(s)	6, 270
BspPI	GGATC	1 cut(s)	475
BspT107I	GGYRCC	2 cut(s)	4, 268
BspTNI	GGTCTC	1 cut(s)	445
BsrFI	RCCGGY	1 cut(s)	123
BsrI	ACTGG	1 cut(s)	34
BssAI	RCCGGY	1 cut(s)	123
BssMI	GATC	2 cut(s)	476, 480
Bst6I	CTCTTC	1 cut(s)	365
BstAPI	GCANNNNNTGC	1 cut(s)	283
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	1 cut(s)	169
BstF5I	GGATG	2 cut(s)	253, 303
BstFNI	CGCG	3 cut(s)	79, 177, 304
BstHHI	GCGC	2 cut(s)	217, 497
BstKTI	GATC	2 cut(s)	479, 483
BstMAI	GTCTC	2 cut(s)	131, 445
BstMBI	GATC	2 cut(s)	476, 480
BstMWI	GCNNNNNNNGC	2 cut(s)	174, 283
BstNSI	RCATGY	1 cut(s)	131
BstSCI	CCNGG	1 cut(s)	357
BstUI	CGCG	3 cut(s)	79, 177, 304
BstV1I	GCAGC	1 cut(s)	321
Bsu15I	ATCGAT	1 cut(s)	479
BsuTUI	ATCGAT	1 cut(s)	479
BtsCI	GGATG	2 cut(s)	253, 303
BtsI	GCAGTG	1 cut(s)	442
BtsIMutI	CAGTG	2 cut(s)	27, 442
Cac8I	GCNNGC	1 cut(s)	129
CfoI	GCGC	2 cut(s)	217, 497
Cfr10I	RCCGGY	1 cut(s)	123
Cfr13I	GGNCC	1 cut(s)	355
ClaI	ATCGAT	1 cut(s)	479
CseI	GACGC	2 cut(s)	166, 183
Csp6I	GTAC	3 cut(s)	85, 281, 404
CviAII	CATG	2 cut(s)	128, 210
CviJI	RGCY	5 cut(s)	11, 146, 168, 197, 334
CviKI_1	RGCY	5 cut(s)	11, 146, 168, 197, 334
CviQI	GTAC	3 cut(s)	85, 281, 404
DdeI	CTNAG	1 cut(s)	169
DpnI	GATC	2 cut(s)	478, 482
DpnII	GATC	2 cut(s)	476, 480
Eam1104I	CTCTTC	1 cut(s)	365
EarI	CTCTTC	1 cut(s)	365
Eco31I	GGTCTC	1 cut(s)	445
Eco32I	GATATC	1 cut(s)	470
Eco47I	GGWCC	1 cut(s)	355
Eco57I	CTGAAG	2 cut(s)	183, 350
EcoRI	GAATTC	1 cut(s)	388
EcoRV	GATATC	1 cut(s)	470
FaeI	CATG	2 cut(s)	131, 213
FaiI	YATR	4 cut(s)	129, 211, 255, 386
FatI	CATG	2 cut(s)	127, 209
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	1 cut(s)	335
FokI	GGATG	2 cut(s)	260, 310
Fsp4HI	GCNGC	1 cut(s)	335
FspBI	CTAG	1 cut(s)	417
GlaI	GCGC	2 cut(s)	216, 496
GluI	GCNGC	1 cut(s)	335
HapII	CCGG	3 cut(s)	116, 124, 358
HgaI	GACGC	2 cut(s)	166, 183
HhaI	GCGC	2 cut(s)	217, 497
Hin1II	CATG	2 cut(s)	131, 213
Hin6I	GCGC	2 cut(s)	215, 495
HinP1I	GCGC	2 cut(s)	215, 495
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HinfI	GANTC	2 cut(s)	149, 206
HpaII	CCGG	3 cut(s)	116, 124, 358
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	6 cut(s)	154, 202, 310, 369, 429, 485
Hpy188III	TCNNGA	3 cut(s)	116, 136, 171
Hpy8I	GTNNAC	1 cut(s)	181
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	1 cut(s)	310
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	3 cut(s)	277, 337, 435
HpyF10VI	GCNNNNNNNGC	2 cut(s)	174, 283
HpyF3I	CTNAG	1 cut(s)	169
HpySE526I	ACGT	1 cut(s)	243
Hsp92II	CATG	2 cut(s)	131, 213
HspAI	GCGC	2 cut(s)	215, 495
Kpn2I	TCCGGA	1 cut(s)	115
Kzo9I	GATC	2 cut(s)	476, 480
LpnPI	CCDG	9 cut(s)	15, 21, 90, 129, 137, 156, 338, 371, 474
Lsp1109I	GCAGC	1 cut(s)	321
MaeI	CTAG	1 cut(s)	417
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	1 cut(s)	291
MalI	GATC	2 cut(s)	478, 482
MboI	GATC	2 cut(s)	476, 480
MboII	GAAGA	2 cut(s)	356, 382
MfeI	CAATTG	1 cut(s)	338
MluCI	AATT	5 cut(s)	326, 338, 375, 388, 486
MluI	ACGCGT	1 cut(s)	175
MnlI	CCTC	4 cut(s)	148, 196, 324, 465
MroI	TCCGGA	1 cut(s)	115
MslI	CAYNNNNRTG	1 cut(s)	188
MspA1I	CMGCKG	1 cut(s)	11
MspI	CCGG	3 cut(s)	116, 124, 358
MspR9I	CCNGG	1 cut(s)	359
MunI	CAATTG	1 cut(s)	338
MvnI	CGCG	3 cut(s)	79, 177, 304
MwoI	GCNNNNNNNGC	2 cut(s)	174, 283
NciI	CCSGG	1 cut(s)	359
NdeII	GATC	2 cut(s)	476, 480
NlaIII	CATG	2 cut(s)	131, 213
NlaIV	GGNNCC	2 cut(s)	6, 270
NmuCI	GTSAC	1 cut(s)	291
NspI	RCATGY	1 cut(s)	131
PaeI	GCATGC	1 cut(s)	131
PfeI	GAWTC	2 cut(s)	149, 206
PkrI	GCNGC	1 cut(s)	336
PspN4I	GGNNCC	2 cut(s)	6, 270
PspPI	GGNCC	1 cut(s)	355
PvuII	CAGCTG	1 cut(s)	11
RsaI	GTAC	3 cut(s)	86, 282, 405
RsaNI	GTAC	3 cut(s)	85, 281, 404
RseI	CAYNNNNRTG	1 cut(s)	188
SalI	GTCGAC	1 cut(s)	179
SatI	GCNGC	1 cut(s)	335
Sau3AI	GATC	2 cut(s)	476, 480
Sau96I	GGNCC	1 cut(s)	355
ScaI	AGTACT	2 cut(s)	86, 282
ScrFI	CCNGG	1 cut(s)	359
SetI	ASST	7 cut(s)	13, 170, 246, 357, 457, 463, 506
SinI	GGWCC	1 cut(s)	355
SmiMI	CAYNNNNRTG	1 cut(s)	188
SmlI	CTYRAG	1 cut(s)	499
SmoI	CTYRAG	1 cut(s)	499
SphI	GCATGC	1 cut(s)	131
Sse9I	AATT	5 cut(s)	326, 338, 375, 388, 486
SsiI	CCGC	2 cut(s)	79, 304
SspMI	CTAG	1 cut(s)	417
StyD4I	CCNGG	1 cut(s)	357
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	3 cut(s)	135, 180, 479
TasI	AATT	5 cut(s)	326, 338, 375, 388, 486
TatI	WGTACW	3 cut(s)	84, 280, 403
TfiI	GAWTC	2 cut(s)	149, 206
TscAI	CASTG	2 cut(s)	34, 442
TseFI	GTSAC	1 cut(s)	291
TseI	GCWGC	1 cut(s)	334
Tsp45I	GTSAC	1 cut(s)	291
TspDTI	ATGAA	2 cut(s)	198, 401
TspGWI	ACGGA	1 cut(s)	310
TspRI	CASTG	2 cut(s)	34, 442
VpaK11BI	GGWCC	1 cut(s)	355
XapI	RAATTY	2 cut(s)	388, 486
XceI	RCATGY	1 cut(s)	131
XmiI	GTMKAC	1 cut(s)	180
XspI	CTAG	1 cut(s)	417
ZrmI	AGTACT	2 cut(s)	86, 282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.