Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002714

Physical Location & Seq

Genomic Coordinates Forward (+)

9079142 .. 9086017

Gene Structure 6876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG118600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2700 bp

ATGGCACCTACTGTTCCAATAGACTTCACTGGACAGAAACAATCAATGATGGGCAAGTCACGCAAGTATTCAAAAGGGCAGCTATCTGGTTTTGTGCCGGATTATCGTCACGCTGTTGAGACCATGGGGGAATCAGAAGGGTTTGGAAGCTCAGGACGGGTGGACGCAGAAATGACAGCTTCAGAAGATTCGTGTGCGCCTTCTAAAAGGAAATGCATTAGTTTGAATGTTGATGGTTATGATAGTTTTGGGTTGCCTATGCAAGTGCTTCAGCTGTCAAGAATGTCTCGGACTGAAAGGAAGGATTTAGAAGTGAGGCTGAATTTGGAGCTGGAACAGGTCCGGGACCTTCAGAAGAAAATTGCAGCCATGAGTTCAGCTATTGTGTTATCCCCATCTAGTGATATTCGGAGTTGCAGTGATGGGAAAACCAGACCTCCAGTCGAGGCTTACCATAGACCGTCTGAACCAACTGCGCCGCAGGGTAAGAAACGAGCTCCTCCTGGGCGTAATGGTTCACGCAACAAAAAGAGCTTATCTGCGCATGTGGAGTCCGTGAAGCCAGTTGCCGCTTCAAATGCTCAGTTGATGAAACAATGTGAGGGTGTGCTAAATCTGTTGATGAAACATACATATGCTTGGGTTTTCAAACATCCTGTAGACGTCGTGAAGTTGAATATTCCGGATTATTTTACTGTCATTAAGCATCCAATGGATTTGGGCACTGTGAAGAGCAAGATGACTTCTGGTGGATACTCTAATCCATTAAGTTTTGCTGCTGATGTGCGGCTTACATTCTCAAATGCAATGACTTACAATCCACCTGGAAATGATGTACATATTATGGCTGAGACCCTCAGTAAATATTTTGAACAGAAGTGGAAGGCAATAGAAAAGAAGCTTCCTGTTGATGTGGATCCTTTGCCTTTTAGAGCAGCTCTTCATACGGAAATCATAGAAACTGCTACACCTATGCCACCCTCAAAGAAGAAGAAAACTATACCAAATGATAGTAGCTTCAAGCCAGTCAAGCCTGTCAAGCCAGAAACTCTTAAATGCATCATGACTGAGGAGGAGAAGCATAAACTGACCGAGGAGGTGGATTCTTTGCTGGGAGAATTGCCTGAAAGCATTATTGATTTCTTAAAGGAGCATAGTGGTGAAGGGCAAACCAGTGAGGATGAGATTGAGATTGACTTTGAGGTTCTCAGTGATGATACTTTATTTGCATTGCGGAAGCTTGTTGATGAATATCTGCTGGATAAAGAGAAAAGGCAGGAGAAAAATGAACCTTGTGAAATGGAGATCCTTAATGAGCCGGGATTTAGCAACTCTTCACTGCATCCATGTAAAGGCAATGACATGGTTGATGAGGATGTGGATATTGTTGGTGGAAACGATGCTCCTATATCAAGCTTCCCTCCTGTAGAGATTGAGAAAGATGCAGCTCATAGAAACAGTAAATTCAGTAGCTCAAGTAGCTCCAGTAGTGAATCAGGCTCTTCGTCTAGTGATTCTGACTCTGCCAGTTCTTCAGAAAGTGAATCACGTGTTCCTAAAGCTTCACCTGCATTTGGTGGAGGAAAGGAAAAGTTTGGTTCAGGAGCAAATTCAGATCAAAAGAGAAGTGATCTTGGTGATTCTGAAATTGGCAAAGATCCAATCAATGGGGTTGTCCCAGTTGAGCAGAAATCCCCGTCTAAACCAATTTCTGTCGAGGAGGGTGAACGACAAGAGGAGGAGAGTGCTCCACCTGAGAGGCAGGTCTCCCCTGAAAAGCTCTACCGCGCAGCTGTACTGAGGAATCGGTTTGCAGACACAATATTTAAAGCCAAAGAGAAGGCACTTGAAAAGGGTGATAAGTTGGATCCAGAAAAATTGCGAATTGAGAGAGAGGAACTTGAAAGGCGGCGTAAAGAAGAAAAAGCACGCTTGCAAGCCGAGGCCAGAGCTGCAGAAGAGGCTCGGAAAAAGGCTGAAGCAGAAGCTGCGGCTGAAGCTAGAAGGCAAAGGGAACTGGAGAGAGAAGCTGCACGCCAGGCATTGCAAATGATGGAAAAGACGGTCGAAATTAATGAGAACAGTCGATTCATGGAAGATCTAGAAATGTTTAGGGCTGGTGATGAGGATCATTTACCACATTTCATTGAGGAGACCAGCCCGGAGCATTCTCAGAATGAGCTTGGTAGTTTCAAGCTGCAGGGAAGCTGTAATCCCTTGGAGCAACTTGGTTTATTTATGAAGGCGGATGATGATATAGAAATAGAGGAGGAAGAAATTGATCCTCCCAGGAATTTTACAGAACCAGCAAACGAACTTGACGATGTCGAGGAGAGACCTTCAAACGATGTTGTGGAAGGAACTTCGAACGAAGTTGAAGAGGTACCTTCAAACGGAGTTGATGTTGAAGAGGGACCTTCAAACGAGGTTGATGTTGAAGAGGGACCTGGGAATGACATTGGAGAGGGACCGGGGAATGACATTGGAGAGGGACCGGGGAATGATATGGGAGAAGGACCTGGGAATGATATGGGGGAGGGGCCTGCTAATGATGTTGAATTACCTGCAAACGAGATCAAAGAGGTTTCTGCAAATGATGTTGCAGAGGGAACAGAAAATCATGTTGAAGAGTCAGCAAATCATGTTGATGAGAGAACTGAAAATGAGGTTGAAGATGTCGAAGAAGGAGAGATTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0008150 GO:0009266 GO:0009267 GO:0009409 GO:0009605 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0033993 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051365 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0080090 GO:0097305 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

899

Amino Acids

99.2

Weight (kDa)

4.71

Isoelectric Point (pI)

56.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromodomain	PF00439	200 - 284	1.4e-18	Bromodomain
BET	PF17035	355 - 416	4.6e-16	Bromodomain extra-terminal - transcription regulation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63320 AT5G63320 AT5G63320
fragaria_vesca	FvH4_2g09340 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g15310 FvH4_7g03961
malus_domestica	MD06G1147900.v1.1 MD14G1162200.v1.1
prunus_persica	Prupe.5G154800_v2.0.a1
pyrus_communis	pycom06g13720 pycom06g13730 pycom14g13510 pycom72g00010
rosa_chinensis	RchiOBHm_Chr7g0190781
rosa_laevigata	RLG00000004496 RLG00000004499
rosa_multiflora	Rmu_co8422347.1_g000001 Rmu_sc0002819.1_g000007
rosa_roxburghii	Rroxscaffold_3G00264320
rosa_rugosa	Rorug06G0506700 Rorug06G0506700 Rorug06G0506700 Rorug06G0506800
rosa_samantha	Rh7AG113500 Rh7BG116000 Rh7CG118600 Rh7DG117500
rosa_wichuraiana	Rw7G009910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1576
AatII	GACGTC	1 cut(s)	666
Acc16I	TGCGCA	1 cut(s)	543
Acc36I	ACCTGC	3 cut(s)	1576, 1753, 2572
Acc65I	GGTACC	1 cut(s)	2383
AccB1I	GGYRCC	2 cut(s)	4, 2383
AccB7I	CCANNNNNTGG	1 cut(s)	1667
AccI	GTMKAC	1 cut(s)	660
AccII	CGCG	1 cut(s)	1788
AccIII	TCCGGA	1 cut(s)	682
AciI	CCGC	8 cut(s)	479, 570, 787, 1234, 1786, 1909, 1991, 2246
AclWI	GGATC	8 cut(s)	911, 924, 1300, 1652, 1862, 1875, 2136, 2276
AcsI	RAATTY	4 cut(s)	322, 1463, 1609, 2293
AcuI	CTGAAG	6 cut(s)	165, 254, 335, 1518, 1998, 2016
AcvI	CACGTG	1 cut(s)	1550
AcyI	GRCGYC	1 cut(s)	663
AfaI	GTAC	3 cut(s)	837, 1797, 2385
AfiI	CCNNNNNNNGG	4 cut(s)	1352, 1574, 1667, 2393
AflIII	ACRYGT	1 cut(s)	1549
AhdI	GACNNNNNGTC	1 cut(s)	440
AjnI	CCWGG	6 cut(s)	502, 823, 2037, 2288, 2446, 2518
Alw21I	GWGCWC	2 cut(s)	499, 1750
Alw26I	GTCTC	6 cut(s)	113, 291, 845, 1771, 2147, 2329
AlwI	GGATC	8 cut(s)	911, 924, 1300, 1652, 1862, 1875, 2136, 2276
AlwNI	CAGNNNCTG	1 cut(s)	1988
Aor13HI	TCCGGA	1 cut(s)	682
AoxI	GGCC	2 cut(s)	1944, 2540
ApoI	RAATTY	4 cut(s)	322, 1463, 1609, 2293
AseI	ATTAAT	1 cut(s)	2073
Asp718I	GGTACC	1 cut(s)	2383
AspLEI	GCGC	4 cut(s)	199, 478, 544, 1790
AspS9I	GGNCC	8 cut(s)	340, 346, 2414, 2444, 2468, 2492, 2516, 2540
AsuC2I	CCSGG	5 cut(s)	344, 1320, 2162, 2472, 2496
AsuHPI	GGTGA	6 cut(s)	1172, 1557, 1649, 1736, 1868, 2132
AsuII	TTCGAA	1 cut(s)	2366
AvaII	GGWCC	7 cut(s)	340, 346, 2414, 2444, 2468, 2492, 2516
BaeGI	GKGCMC	1 cut(s)	725
BamHI	GGATCC	2 cut(s)	916, 1867
BanI	GGYRCC	2 cut(s)	4, 2383
BanII	GRGCYC	1 cut(s)	499
BbrPI	CACGTG	1 cut(s)	1550
Bbv12I	GWGCWC	2 cut(s)	499, 1750
BccI	CCATC	5 cut(s)	43, 227, 403, 416, 2047
BciT130I	CCWGG	6 cut(s)	504, 825, 2039, 2290, 2448, 2520
BciVI	GTATCC	1 cut(s)	746
BcnI	CCSGG	5 cut(s)	344, 1320, 2162, 2472, 2496
BcoDI	GTCTC	6 cut(s)	113, 291, 845, 1771, 2147, 2329
BfaI	CTAG	4 cut(s)	399, 1509, 2001, 2102
BfmI	CTRYAG	4 cut(s)	657, 1425, 1953, 2198
BfuAI	ACCTGC	3 cut(s)	1576, 1753, 2572
BfuI	GTATCC	1 cut(s)	746
BglII	AGATCT	1 cut(s)	2098
Bme18I	GGWCC	7 cut(s)	340, 346, 2414, 2444, 2468, 2492, 2516
BmeRI	GACNNNNNGTC	1 cut(s)	440
BmgT120I	GGNCC	8 cut(s)	340, 346, 2414, 2444, 2468, 2492, 2516, 2540
BmrI	ACTGGG	1 cut(s)	1673
BmsI	GCATC	5 cut(s)	715, 1068, 1351, 1390, 1432
BmuI	ACTGGG	1 cut(s)	1673
BpmI	CTGGAG	3 cut(s)	423, 1468, 2039
Bpu10I	CCTNAGC	1 cut(s)	151
Bpu14I	TTCGAA	1 cut(s)	2366
BpuEI	CTTGAG	1 cut(s)	1459
BpuMI	CCSGG	5 cut(s)	344, 1320, 2162, 2472, 2496
BsaAI	YACGTR	1 cut(s)	1550
BsaBI	GATNNNNATC	3 cut(s)	915, 1251, 2127
BsaHI	GRCGYC	1 cut(s)	663
BsaI	GGTCTC	5 cut(s)	113, 845, 1771, 2147, 2329
BsaWI	WCCGGW	1 cut(s)	682
BsaXI	ACNNNNNCTCC	6 cut(s)	403, 421, 433, 451, 2388, 2418
Bsc4I	CCNNNNNNNGG	4 cut(s)	1352, 1574, 1667, 2393
Bse1I	ACTGG	9 cut(s)	34, 440, 563, 1025, 1173, 1485, 1527, 1679, 2022
Bse3DI	GCAATG	4 cut(s)	813, 1229, 1363, 2042
Bse8I	GATNNNNATC	3 cut(s)	915, 1251, 2127
BseAI	TCCGGA	1 cut(s)	682
BseBI	CCWGG	6 cut(s)	504, 825, 2039, 2290, 2448, 2520
BseGI	GGATG	6 cut(s)	652, 706, 1186, 1342, 1381, 2254
BseJI	GATNNNNATC	3 cut(s)	915, 1251, 2127
BseLI	CCNNNNNNNGG	4 cut(s)	1352, 1574, 1667, 2393
BseMI	GCAATG	4 cut(s)	813, 1229, 1363, 2042
BseMII	CTCAG	9 cut(s)	165, 596, 840, 871, 1059, 1222, 1746, 1790, 2186
BseNI	ACTGG	9 cut(s)	34, 440, 563, 1025, 1173, 1485, 1527, 1679, 2022
BseSI	GKGCMC	1 cut(s)	725
BseYI	CCCAGC	1 cut(s)	1111
BsgI	GTGCAG	1 cut(s)	2016
Bsh1236I	CGCG	1 cut(s)	1788
Bsh1285I	CGRYCG	1 cut(s)	2067
BshFI	GGCC	2 cut(s)	1946, 2542
BshNI	GGYRCC	2 cut(s)	4, 2383
BsiEI	CGRYCG	1 cut(s)	2067
BsiHKAI	GWGCWC	2 cut(s)	499, 1750
BsiSI	CCGG	7 cut(s)	98, 343, 683, 1319, 2162, 2471, 2495
BslFI	GGGAC	6 cut(s)	359, 1661, 2427, 2457, 2481, 2505
BslI	CCNNNNNNNGG	4 cut(s)	1352, 1574, 1667, 2393
BsmAI	GTCTC	6 cut(s)	113, 291, 845, 1771, 2147, 2329
BsmFI	GGGAC	6 cut(s)	359, 1661, 2427, 2457, 2481, 2505
BsmI	GAATGC	1 cut(s)	2167
BsnI	GGCC	2 cut(s)	1946, 2542
Bso31I	GGTCTC	5 cut(s)	113, 845, 1771, 2147, 2329
Bsp119I	TTCGAA	1 cut(s)	2366
Bsp1286I	GDGCHC	3 cut(s)	499, 725, 1750
Bsp13I	TCCGGA	1 cut(s)	682
Bsp1407I	TGTACA	1 cut(s)	835
Bsp19I	CCATGG	1 cut(s)	123
BspACI	CCGC	8 cut(s)	479, 570, 787, 1234, 1786, 1909, 1991, 2246
BspANI	GGCC	2 cut(s)	1946, 2542
BspCNI	CTCAG	9 cut(s)	164, 595, 841, 870, 1060, 1221, 1747, 1791, 2185
BspEI	TCCGGA	1 cut(s)	682
BspFNI	CGCG	1 cut(s)	1788
BspHI	TCATGA	1 cut(s)	1062
BspMAI	CTGCAG	2 cut(s)	1957, 2202
BspMI	ACCTGC	3 cut(s)	1576, 1753, 2572
BspPI	GGATC	8 cut(s)	911, 924, 1300, 1652, 1862, 1875, 2136, 2276
BspQI	GCTCTTC	3 cut(s)	725, 945, 1507
BspT104I	TTCGAA	1 cut(s)	2366
BspT107I	GGYRCC	2 cut(s)	4, 2383
BspTNI	GGTCTC	5 cut(s)	113, 845, 1771, 2147, 2329
BsrDI	GCAATG	4 cut(s)	813, 1229, 1363, 2042
BsrGI	TGTACA	1 cut(s)	835
BsrI	ACTGG	9 cut(s)	34, 440, 563, 1025, 1173, 1485, 1527, 1679, 2022
BssNI	GRCGYC	1 cut(s)	663
BssT1I	CCWWGG	2 cut(s)	123, 2217
Bst2UI	CCWGG	6 cut(s)	504, 825, 2039, 2290, 2448, 2520
Bst4CI	ACNGT	7 cut(s)	13, 462, 697, 727, 1460, 2065, 2084
Bst6I	CTCTTC	9 cut(s)	725, 945, 1339, 1507, 1953, 2373, 2403, 2433, 2622
BstACI	GRCGYC	1 cut(s)	663
BstAPI	GCANNNNNTGC	1 cut(s)	1988
BstAUI	TGTACA	1 cut(s)	835
BstBAI	YACGTR	1 cut(s)	1550
BstBI	TTCGAA	1 cut(s)	2366
BstC8I	GCNNGC	5 cut(s)	1930, 1934, 1938, 2035, 2544
BstDEI	CTNAG	9 cut(s)	151, 582, 849, 857, 1068, 1208, 1755, 1799, 2172
BstDSI	CCRYGG	1 cut(s)	123
BstF5I	GGATG	6 cut(s)	652, 706, 1186, 1342, 1381, 2254
BstFNI	CGCG	1 cut(s)	1788
BstHHI	GCGC	4 cut(s)	199, 478, 544, 1790
BstMAI	GTCTC	6 cut(s)	113, 291, 845, 1771, 2147, 2329
BstMCI	CGRYCG	1 cut(s)	2067
BstNI	CCWGG	6 cut(s)	504, 825, 2039, 2290, 2448, 2520
BstNSI	RCATGY	1 cut(s)	548
BstSFI	CTRYAG	4 cut(s)	657, 1425, 1953, 2198
BstSLI	GKGCMC	1 cut(s)	725
BstUI	CGCG	1 cut(s)	1788
BstX2I	RGATCY	5 cut(s)	916, 1305, 1657, 1867, 2098
BstYI	RGATCY	5 cut(s)	916, 1305, 1657, 1867, 2098
BsuI	GTATCC	1 cut(s)	746
BsuRI	GGCC	2 cut(s)	1946, 2542
BtgI	CCRYGG	1 cut(s)	123
BtsCI	GGATG	6 cut(s)	652, 706, 1186, 1342, 1381, 2254
BtsI	GCAGTG	2 cut(s)	424, 1337
BtsIMutI	CAGTG	6 cut(s)	27, 424, 723, 1180, 1216, 1337
BveI	ACCTGC	3 cut(s)	1576, 1753, 2572
Cac8I	GCNNGC	5 cut(s)	1930, 1934, 1938, 2035, 2544
CaiI	CAGNNNCTG	1 cut(s)	1988
CciI	TCATGA	1 cut(s)	1062
CfoI	GCGC	4 cut(s)	199, 478, 544, 1790
Cfr13I	GGNCC	8 cut(s)	340, 346, 2414, 2444, 2468, 2492, 2516, 2540
CseI	GACGC	1 cut(s)	173
Csp6I	GTAC	3 cut(s)	836, 1796, 2384
CviAII	CATG	9 cut(s)	124, 370, 545, 1063, 1347, 1363, 2092, 2621, 2642
CviQI	GTAC	3 cut(s)	836, 1796, 2384
DdeI	CTNAG	9 cut(s)	151, 582, 849, 857, 1068, 1208, 1755, 1799, 2172
DraI	TTTAAA	1 cut(s)	1828
DriI	GACNNNNNGTC	1 cut(s)	440
Eam1104I	CTCTTC	9 cut(s)	725, 945, 1339, 1507, 1953, 2373, 2403, 2433, 2622
Eam1105I	GACNNNNNGTC	1 cut(s)	440
EarI	CTCTTC	9 cut(s)	725, 945, 1339, 1507, 1953, 2373, 2403, 2433, 2622
EciI	GGCGGA	1 cut(s)	2261
Ecl136II	GAGCTC	1 cut(s)	497
Eco130I	CCWWGG	2 cut(s)	123, 2217
Eco24I	GRGCYC	1 cut(s)	499
Eco31I	GGTCTC	5 cut(s)	113, 845, 1771, 2147, 2329
Eco47I	GGWCC	7 cut(s)	340, 346, 2414, 2444, 2468, 2492, 2516
Eco53kI	GAGCTC	1 cut(s)	497
Eco57I	CTGAAG	6 cut(s)	165, 254, 335, 1518, 1998, 2016
Eco72I	CACGTG	1 cut(s)	1550
EcoICRI	GAGCTC	1 cut(s)	497
EcoO109I	RGGNCCY	5 cut(s)	346, 2414, 2444, 2516, 2540
EcoRII	CCWGG	6 cut(s)	502, 823, 2037, 2288, 2446, 2518
EcoT14I	CCWWGG	2 cut(s)	123, 2217
EcoT22I	ATGCAT	2 cut(s)	218, 1061
EcoT38I	GRGCYC	1 cut(s)	499
ErhI	CCWWGG	2 cut(s)	123, 2217
FaeI	CATG	9 cut(s)	127, 373, 548, 1066, 1350, 1366, 2095, 2624, 2645
FaqI	GGGAC	6 cut(s)	359, 1661, 2427, 2457, 2481, 2505
FatI	CATG	9 cut(s)	123, 369, 544, 1062, 1346, 1362, 2091, 2620, 2641
FauNDI	CATATG	1 cut(s)	634
FblI	GTMKAC	1 cut(s)	660
FokI	GGATG	6 cut(s)	639, 693, 1193, 1329, 1388, 2261
FriOI	GRGCYC	1 cut(s)	499
FspBI	CTAG	4 cut(s)	399, 1509, 2001, 2102
FspI	TGCGCA	1 cut(s)	543
GlaI	GCGC	4 cut(s)	198, 477, 543, 1789
GsaI	CCCAGC	1 cut(s)	1115
GsuI	CTGGAG	3 cut(s)	423, 1468, 2039
HaeIII	GGCC	2 cut(s)	1946, 2542
HapII	CCGG	7 cut(s)	98, 343, 683, 1319, 2162, 2471, 2495
HgaI	GACGC	1 cut(s)	173
HhaI	GCGC	4 cut(s)	199, 478, 544, 1790
Hin1I	GRCGYC	1 cut(s)	663
Hin1II	CATG	9 cut(s)	127, 373, 548, 1066, 1350, 1366, 2095, 2624, 2645
Hin6I	GCGC	4 cut(s)	197, 476, 542, 1788
HinP1I	GCGC	4 cut(s)	197, 476, 542, 1788
HindIII	AAGCTT	4 cut(s)	899, 1238, 1414, 1560
HpaII	CCGG	7 cut(s)	98, 343, 683, 1319, 2162, 2471, 2495
HphI	GGTGA	6 cut(s)	1172, 1557, 1649, 1736, 1868, 2132
Hpy166II	GTNNAC	4 cut(s)	163, 518, 661, 1727
Hpy188III	TCNNGA	8 cut(s)	153, 279, 667, 683, 1063, 1602, 1871, 2102
Hpy8I	GTNNAC	4 cut(s)	163, 518, 661, 1727
Hpy99I	CGWCG	1 cut(s)	668
HpyCH4III	ACNGT	7 cut(s)	13, 462, 697, 727, 1460, 2065, 2084
HpyCH4IV	ACGT	2 cut(s)	663, 1549
HpyF3I	CTNAG	9 cut(s)	151, 582, 849, 857, 1068, 1208, 1755, 1799, 2172
HpySE526I	ACGT	2 cut(s)	663, 1549
Hsp92I	GRCGYC	1 cut(s)	663
Hsp92II	CATG	9 cut(s)	127, 373, 548, 1066, 1350, 1366, 2095, 2624, 2645
HspAI	GCGC	4 cut(s)	197, 476, 542, 1788
Kpn2I	TCCGGA	1 cut(s)	682
KpnI	GGTACC	1 cut(s)	2387
LguI	GCTCTTC	3 cut(s)	725, 945, 1507
LmnI	GCTCC	9 cut(s)	328, 502, 1150, 1408, 1487, 1604, 1753, 2164, 2221
LweI	GCATC	5 cut(s)	715, 1068, 1351, 1390, 1432
MaeI	CTAG	4 cut(s)	399, 1509, 2001, 2102
MaeII	ACGT	2 cut(s)	663, 1549
MaeIII	GTNAC	2 cut(s)	57, 107
MflI	RGATCY	5 cut(s)	916, 1305, 1657, 1867, 2098
MhlI	GDGCHC	3 cut(s)	499, 725, 1750
MlyI	GAGTC	3 cut(s)	560, 1514, 2639
MmeI	TCCRAC	1 cut(s)	1845
Mph1103I	ATGCAT	2 cut(s)	218, 1061
MroI	TCCGGA	1 cut(s)	682
MseI	TTAA	7 cut(s)	702, 767, 1053, 1145, 1311, 1827, 2073
MslI	CAYNNNNRTG	3 cut(s)	633, 1158, 2646
MspA1I	CMGCKG	2 cut(s)	274, 1793
MspI	CCGG	7 cut(s)	98, 343, 683, 1319, 2162, 2471, 2495
Mva1269I	GAATGC	1 cut(s)	2167
MvaI	CCWGG	6 cut(s)	504, 825, 2039, 2290, 2448, 2520
MvnI	CGCG	1 cut(s)	1788
NciI	CCSGG	5 cut(s)	344, 1320, 2162, 2472, 2496
NcoI	CCATGG	1 cut(s)	123
NdeI	CATATG	1 cut(s)	634
NlaIII	CATG	9 cut(s)	127, 373, 548, 1066, 1350, 1366, 2095, 2624, 2645
NmeAIII	GCCGAG	1 cut(s)	1966
NmuCI	GTSAC	2 cut(s)	57, 107
NsbI	TGCGCA	1 cut(s)	543
NsiI	ATGCAT	2 cut(s)	218, 1061
NspI	RCATGY	1 cut(s)	548
NspV	TTCGAA	1 cut(s)	2366
PagI	TCATGA	1 cut(s)	1062
PaqCI	CACCTGC	1 cut(s)	1576
PciSI	GCTCTTC	3 cut(s)	725, 945, 1507
PcsI	WCGNNNNNNNCGW	1 cut(s)	2319
PctI	GAATGC	1 cut(s)	2167
PfeI	GAWTC	9 cut(s)	131, 188, 1103, 1493, 1514, 1544, 1640, 1804, 2088
PflFI	GACNNNGTC	1 cut(s)	2324
PflMI	CCANNNNNTGG	1 cut(s)	1667
PfoI	TCCNGGA	1 cut(s)	342
PleI	GAGTC	3 cut(s)	559, 1514, 2638
PmaCI	CACGTG	1 cut(s)	1550
PmlI	CACGTG	1 cut(s)	1550
PpsI	GAGTC	3 cut(s)	559, 1514, 2638
Ppu21I	YACGTR	1 cut(s)	1550
PpuMI	RGGWCCY	4 cut(s)	346, 2414, 2444, 2516
PshBI	ATTAAT	1 cut(s)	2073
Psp124BI	GAGCTC	1 cut(s)	499
Psp5II	RGGWCCY	4 cut(s)	346, 2414, 2444, 2516
Psp6I	CCWGG	6 cut(s)	502, 823, 2037, 2288, 2446, 2518
PspCI	CACGTG	1 cut(s)	1550
PspFI	CCCAGC	1 cut(s)	1111
PspGI	CCWGG	6 cut(s)	502, 823, 2037, 2288, 2446, 2518
PspPI	GGNCC	8 cut(s)	340, 346, 2414, 2444, 2468, 2492, 2516, 2540
PspPPI	RGGWCCY	4 cut(s)	346, 2414, 2444, 2516
PstI	CTGCAG	2 cut(s)	1957, 2202
PstNI	CAGNNNCTG	1 cut(s)	1988
PsuI	RGATCY	5 cut(s)	916, 1305, 1657, 1867, 2098
PsyI	GACNNNGTC	1 cut(s)	2324
PvuII	CAGCTG	2 cut(s)	274, 1793
RsaI	GTAC	3 cut(s)	837, 1797, 2385
RsaNI	GTAC	3 cut(s)	836, 1796, 2384
RseI	CAYNNNNRTG	3 cut(s)	633, 1158, 2646
SacI	GAGCTC	1 cut(s)	499
SapI	GCTCTTC	3 cut(s)	725, 945, 1507
SaqAI	TTAA	7 cut(s)	702, 767, 1053, 1145, 1311, 1827, 2073
Sau96I	GGNCC	8 cut(s)	340, 346, 2414, 2444, 2468, 2492, 2516, 2540
SchI	GAGTC	3 cut(s)	560, 1514, 2639
SduI	GDGCHC	3 cut(s)	499, 725, 1750
SfaNI	GCATC	5 cut(s)	715, 1068, 1351, 1390, 1432
SfcI	CTRYAG	4 cut(s)	657, 1425, 1953, 2198
SfuI	TTCGAA	1 cut(s)	2366
SinI	GGWCC	7 cut(s)	340, 346, 2414, 2444, 2468, 2492, 2516
SmiMI	CAYNNNNRTG	3 cut(s)	633, 1158, 2646
SmlI	CTYRAG	1 cut(s)	1474
SmoI	CTYRAG	1 cut(s)	1474
SsiI	CCGC	8 cut(s)	479, 570, 787, 1234, 1786, 1909, 1991, 2246
SspI	AATATT	3 cut(s)	679, 866, 1824
SspMI	CTAG	4 cut(s)	399, 1509, 2001, 2102
SstI	GAGCTC	1 cut(s)	499
StyI	CCWWGG	2 cut(s)	123, 2217
TaaI	ACNGT	7 cut(s)	13, 462, 697, 727, 1460, 2065, 2084
TaiI	ACGT	2 cut(s)	666, 1552
TaqI	TCGA	7 cut(s)	444, 1716, 2067, 2086, 2328, 2366, 2679
TaqII	GACCGA	1 cut(s)	1106
TatI	WGTACW	2 cut(s)	835, 1795
TauI	GCSGC	5 cut(s)	481, 572, 790, 1912, 1994
TfiI	GAWTC	9 cut(s)	131, 188, 1103, 1493, 1514, 1544, 1640, 1804, 2088
Tru1I	TTAA	7 cut(s)	702, 767, 1053, 1145, 1311, 1827, 2073
Tru9I	TTAA	7 cut(s)	702, 767, 1053, 1145, 1311, 1827, 2073
TscAI	CASTG	6 cut(s)	34, 424, 730, 1180, 1216, 1344
TseFI	GTSAC	2 cut(s)	57, 107
Tsp45I	GTSAC	2 cut(s)	57, 107
TspDTI	ATGAA	8 cut(s)	605, 638, 932, 1263, 1302, 2080, 2134, 2255
TspGWI	ACGGA	3 cut(s)	544, 962, 2409
TspRI	CASTG	6 cut(s)	34, 424, 730, 1180, 1216, 1344
Tth111I	GACNNNGTC	1 cut(s)	2324
Van91I	CCANNNNNTGG	1 cut(s)	1667
VpaK11BI	GGWCC	7 cut(s)	340, 346, 2414, 2444, 2468, 2492, 2516
VspI	ATTAAT	1 cut(s)	2073
XapI	RAATTY	4 cut(s)	322, 1463, 1609, 2293
XbaI	TCTAGA	1 cut(s)	2101
XceI	RCATGY	1 cut(s)	548
XmiI	GTMKAC	1 cut(s)	660
XspI	CTAG	4 cut(s)	399, 1509, 2001, 2102
ZraI	GACGTC	1 cut(s)	664
Zsp2I	ATGCAT	2 cut(s)	218, 1061

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.