Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002714

Physical Location & Seq

Genomic Coordinates Forward (+)

8879340 .. 8884382

Gene Structure 5043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG113500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2733 bp

ATGGCACCTACTGTTCCAATAGACTTCACTGGACAGAAACAATCAATGATGGGCAAGTCACGCAAATATTCAAAAGGGCAGCTATCTGGTTTTGTGCCGGATTATCGTCACGCTGTTGAGACCATGGGGGAATCAGAAGGGTTTGGAAGCTCAGGACGGGTGGACGCAGAAATGACAGCTTCGGAAGATTCGTGTGCGCCTTCTAAAAGGAAATGCATTAGTTTGAATGTTGATGGTTATGATAGTTTTGGGTTGCCTATGCAAGTGCTTCAGCTGTCAAGAATGTCTCGGACTGAAAGGAAGGATTTAGAAGTGAGGCTGAATTTGGAGCTGGAACAGGTCCGGGACCTTCAGAAGAAAATTGCAGCCATGAGTTCAGCTATTGTGTTATCCCCATCTAGTGATATTCGGAGTTGCAGTGATGGGAAAACCAGACCTCCAGTCGAGGTTTACCATAGACCGTCTGAACCAACTGCGCCTCAGGGTAAGAAACGAGCTCCTCCTGGGCGTAATGGTTCACGCAACAAAAAGAGCTTATCTGCGCATGTGGAGTCCGTGAAGCCAGTTGCCGCTTCAAATGCTCAGTTGATGAAACAATGTGAGGGTGTGCTAAATCTGTTGATGAAACATACATATGCTTGGGTTTTCAAACATCCTGTAGACGTCGTGAAGTTGAATATTCCGGATTATTTTACTGTCATTAAGCATCCAATGGATTTGGGCACTGTGAAGAGCAAGATGACTTCTGGTGGATACTCTAATCCATTAAGTTTTGCTGCTGATGTGCGGCTTACATTCTCAAATGCAATGACTTACAATCCACCTGGAAATGATGTACATATTATGGCTGAGACGCTCAGTAAATATTTTGAACAGAAGTGGAAGGCAATAGAAAAGAAGCTTCCTGTTGATGTGGATCCTTCGCCTTTTAGAGCAGCTCTTCATACGGAAATCATAGAAACTGCTACACCTATGCCACCCTCAAAGAAGAAGAAAACTATACCAAATGATAGTAGCTTCAAGCCAGTCAAGCCTGTCAAGCCTGTCAAGCCAGAAACTCTTAAATGCATCATGACTGAGGAGGAGAAGCATAAACTGACCGAGGAGGTGGATTCTTTGCTGGGAGAATTGCCTGAAAGCATTATTGATTTCTTAAAGGAGCATAGTGGTGAAGGGCAAACCAGTGAGGATGAGATTGAGATTGACTTTGAGGTTCTCAGTGATGATACCTTATTTGCATTGCGGAAGCTTGTTGATGAATATCTGCTGGATAAAGAGAAAAGGCAGGAGAAAAATGAACCTTGTGAAATGGAGATCCTTAATGAGCCGGGATTTAGCAACTCTTCACTGCATCCATGTAAAGGCAATGACATGGTTGATGAGGATGTGGATATTGTGGGTGGAAACGATGCTCCTATATCAAGCTTCCCTCCTGTAGAGATTGAGAAAGATGCAGCTCATAGAAACAGTAAATTCAGTAGCTCAAGCAGCTCCAGTAGTGAATCAGGCTCTTCGTCTAGTGATTCTGACTCTGCCAGTTCTTCAGAAAGTGAATCACGTGTTCCTAAAGCTTCACCTGCATTTGGTGGAGGAAAGGAAAAGTTTGGTTCAGGAGCAAATTCAGATCAAAAGAGAAGTGATCTTGGTGATTCTGAAATTGGCAAAGATCCAATCAATGGGGTTGTCCCAGTTGAGCAGAAATCCCCGTCTAAACCAATTTCTGTCGAGGAGGGTGAACGACAAGAGGAGGAGAGTGCTCCACCTGAGAGGCAGGTCTCCCCTGAAAAGCTCTACCGCGCAGCTGTACTGAGGAATCGGTTTGCAGACACAATATTTAAAGCCAAAGAGAAGGCACTTGAAAAGGGTGATAAGTTGGATCCAGAAAAATTGCGAATTGAGAGAGAGGAACTTGAAAGGCGGCGTAAAGAAGAAAAAGCACGCTTGCAAGCCGAGGCCAGAGCTGCAGAAGAGGCTCGGAAAAAGGCTGAAGCAGAAGCTGTGGCTGAAGCTAGAAGGCAAAGGGAACTGGAGAGAGAAGCTGCACGCCAGGCATTGCAAATGATGGAAAAGACGGTCGAAATTAATGAGAACAGTCGATTCATGGAAGATCTAGAAATGTTTAGGGCTGGTGACGAGGATCATTTACCACATTTCATTGAGGAGACCAGCCCGGAGCATTCTCAGAATGAGCTTGGTAGTTTCAAGCTGCAGGGAAGCTGTAATCCCTTGGAGCAACTTGGTTTATTTATGAAGGCGGATGATGATATAGAAATAGAGGAGGAAGAAATTGATCCTCCCAGGAATTTTACAGAACCAGCAAACGAAGTTGACGATGTCGAGGAGAGGCCTTCAAACGATGTTGTGGAAGGACCTTCGAACGAAGTTGAAGAGGTACCTTCAAACGGAGTTGATGTTGAAGAGGGACCTTCAAACGAGGTTGATGTTGAAGAGGGACCTGGGGATGATATTGGAGAGGGACCGGGGAATGACCTTGGAGAGGGACCGGGGAATGATATGGGGGAGGGACCAGGGAATGATATGGGAGAAGGACCTGGGAATGATATGGGGGAGGGGCCTGCTAATGATGTTGAATTACCTGCAAACGAGATTAAAGAGGTTTCTGCAAATGATGTTGCAGAGGGAACAGAAAATCATGTTGAAGAGTCAGCAAATCATGTTGATGAGAGAACTGAAAATGAGGTTGAAGATGTCGAAGAAGGAGAGATTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0008150 GO:0009266 GO:0009267 GO:0009409 GO:0009605 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0033993 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051365 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0080090 GO:0097305 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

910

Amino Acids

100.3

Weight (kDa)

4.69

Isoelectric Point (pI)

56.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromodomain	PF00439	200 - 284	1.4e-18	Bromodomain
BET	PF17035	358 - 419	4.7e-16	Bromodomain extra-terminal - transcription regulation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63320 AT5G63320 AT5G63320
fragaria_vesca	FvH4_2g09340 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g15310 FvH4_7g03961
malus_domestica	MD06G1147900.v1.1 MD14G1162200.v1.1
prunus_persica	Prupe.5G154800_v2.0.a1
pyrus_communis	pycom06g13720 pycom06g13730 pycom14g13510 pycom72g00010
rosa_chinensis	RchiOBHm_Chr7g0190781
rosa_laevigata	RLG00000004496 RLG00000004499
rosa_multiflora	Rmu_co8422347.1_g000001 Rmu_sc0002819.1_g000007
rosa_roxburghii	Rroxscaffold_3G00264320
rosa_rugosa	Rorug06G0506700 Rorug06G0506700 Rorug06G0506700 Rorug06G0506800
rosa_samantha	Rh7AG113500 Rh7BG116000 Rh7CG118600 Rh7DG117500
rosa_wichuraiana	Rw7G009910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1585
AatII	GACGTC	1 cut(s)	666
Acc16I	TGCGCA	1 cut(s)	543
Acc36I	ACCTGC	3 cut(s)	1585, 1762, 2605
Acc65I	GGTACC	1 cut(s)	2392
AccB1I	GGYRCC	2 cut(s)	4, 2392
AccB7I	CCANNNNNTGG	1 cut(s)	1676
AccI	GTMKAC	1 cut(s)	660
AccII	CGCG	1 cut(s)	1797
AccIII	TCCGGA	1 cut(s)	682
AciI	CCGC	6 cut(s)	570, 787, 1243, 1795, 1918, 2255
AclWI	GGATC	8 cut(s)	911, 924, 1309, 1661, 1871, 1884, 2145, 2285
AcsI	RAATTY	4 cut(s)	322, 1472, 1618, 2302
AcuI	CTGAAG	5 cut(s)	254, 335, 1527, 2007, 2025
AcvI	CACGTG	1 cut(s)	1559
AcyI	GRCGYC	1 cut(s)	663
AfaI	GTAC	3 cut(s)	837, 1806, 2394
AfiI	CCNNNNNNNGG	5 cut(s)	1361, 1583, 1676, 2402, 2497
AflIII	ACRYGT	1 cut(s)	1558
AhdI	GACNNNNNGTC	1 cut(s)	440
AjnI	CCWGG	7 cut(s)	502, 823, 2046, 2297, 2455, 2527, 2551
Alw21I	GWGCWC	2 cut(s)	499, 1759
Alw26I	GTCTC	5 cut(s)	113, 291, 845, 1780, 2156
AlwI	GGATC	8 cut(s)	911, 924, 1309, 1661, 1871, 1884, 2145, 2285
AlwNI	CAGNNNCTG	1 cut(s)	1997
Aor13HI	TCCGGA	1 cut(s)	682
AoxI	GGCC	3 cut(s)	1953, 2345, 2573
ApoI	RAATTY	4 cut(s)	322, 1472, 1618, 2302
AseI	ATTAAT	1 cut(s)	2082
Asp718I	GGTACC	1 cut(s)	2392
AspLEI	GCGC	4 cut(s)	199, 478, 544, 1799
AsuC2I	CCSGG	5 cut(s)	344, 1329, 2171, 2481, 2505
AsuHPI	GGTGA	6 cut(s)	1181, 1566, 1658, 1745, 1877, 2141
AsuII	TTCGAA	1 cut(s)	2375
AvaII	GGWCC	9 cut(s)	340, 346, 2369, 2423, 2453, 2477, 2501, 2525, 2549
AxyI	CCTNAGG	1 cut(s)	480
BaeGI	GKGCMC	1 cut(s)	725
BamHI	GGATCC	2 cut(s)	916, 1876
BanI	GGYRCC	2 cut(s)	4, 2392
BanII	GRGCYC	1 cut(s)	499
BbrPI	CACGTG	1 cut(s)	1559
Bbv12I	GWGCWC	2 cut(s)	499, 1759
BccI	CCATC	5 cut(s)	43, 227, 403, 416, 2056
BciT130I	CCWGG	7 cut(s)	504, 825, 2048, 2299, 2457, 2529, 2553
BciVI	GTATCC	1 cut(s)	746
BcnI	CCSGG	5 cut(s)	344, 1329, 2171, 2481, 2505
BcoDI	GTCTC	5 cut(s)	113, 291, 845, 1780, 2156
BfaI	CTAG	4 cut(s)	399, 1518, 2010, 2111
BfmI	CTRYAG	4 cut(s)	657, 1434, 1962, 2207
BfuAI	ACCTGC	3 cut(s)	1585, 1762, 2605
BfuI	GTATCC	1 cut(s)	746
BglII	AGATCT	1 cut(s)	2107
Bme18I	GGWCC	9 cut(s)	340, 346, 2369, 2423, 2453, 2477, 2501, 2525, 2549
BmeRI	GACNNNNNGTC	1 cut(s)	440
BmrI	ACTGGG	1 cut(s)	1682
BmsI	GCATC	5 cut(s)	715, 1077, 1360, 1399, 1441
BmuI	ACTGGG	1 cut(s)	1682
BpmI	CTGGAG	3 cut(s)	423, 1477, 2048
Bpu10I	CCTNAGC	1 cut(s)	151
Bpu14I	TTCGAA	1 cut(s)	2375
BpuEI	CTTGAG	1 cut(s)	1468
BpuMI	CCSGG	5 cut(s)	344, 1329, 2171, 2481, 2505
BsaAI	YACGTR	1 cut(s)	1559
BsaBI	GATNNNNATC	2 cut(s)	915, 1260
BsaHI	GRCGYC	1 cut(s)	663
BsaI	GGTCTC	3 cut(s)	113, 1780, 2156
BsaWI	WCCGGW	1 cut(s)	682
BsaXI	ACNNNNNCTCC	6 cut(s)	403, 421, 433, 451, 2397, 2427
Bsc4I	CCNNNNNNNGG	5 cut(s)	1361, 1583, 1676, 2402, 2497
Bse1I	ACTGG	9 cut(s)	34, 440, 563, 1025, 1182, 1494, 1536, 1688, 2031
Bse21I	CCTNAGG	1 cut(s)	480
Bse3DI	GCAATG	4 cut(s)	813, 1238, 1372, 2051
Bse8I	GATNNNNATC	2 cut(s)	915, 1260
BseAI	TCCGGA	1 cut(s)	682
BseBI	CCWGG	7 cut(s)	504, 825, 2048, 2299, 2457, 2529, 2553
BseGI	GGATG	7 cut(s)	652, 706, 1195, 1351, 1390, 2263, 2467
BseJI	GATNNNNATC	2 cut(s)	915, 1260
BseLI	CCNNNNNNNGG	5 cut(s)	1361, 1583, 1676, 2402, 2497
BseMI	GCAATG	4 cut(s)	813, 1238, 1372, 2051
BseNI	ACTGG	9 cut(s)	34, 440, 563, 1025, 1182, 1494, 1536, 1688, 2031
BseSI	GKGCMC	1 cut(s)	725
BseYI	CCCAGC	1 cut(s)	1120
BsgI	GTGCAG	1 cut(s)	2025
Bsh1236I	CGCG	1 cut(s)	1797
Bsh1285I	CGRYCG	1 cut(s)	2076
BshFI	GGCC	3 cut(s)	1955, 2347, 2575
BshNI	GGYRCC	2 cut(s)	4, 2392
BsiEI	CGRYCG	1 cut(s)	2076
BsiHKAI	GWGCWC	2 cut(s)	499, 1759
BsiSI	CCGG	7 cut(s)	98, 343, 683, 1328, 2171, 2480, 2504
BslFI	GGGAC	7 cut(s)	359, 1670, 2436, 2466, 2490, 2514, 2538
BslI	CCNNNNNNNGG	5 cut(s)	1361, 1583, 1676, 2402, 2497
BsmAI	GTCTC	5 cut(s)	113, 291, 845, 1780, 2156
BsmBI	CGTCTC	1 cut(s)	845
BsmFI	GGGAC	7 cut(s)	359, 1670, 2436, 2466, 2490, 2514, 2538
BsmI	GAATGC	1 cut(s)	2176
BsnI	GGCC	3 cut(s)	1955, 2347, 2575
Bso31I	GGTCTC	3 cut(s)	113, 1780, 2156
Bsp119I	TTCGAA	1 cut(s)	2375
Bsp1286I	GDGCHC	3 cut(s)	499, 725, 1759
Bsp13I	TCCGGA	1 cut(s)	682
Bsp1407I	TGTACA	1 cut(s)	835
Bsp143I	GATC	9 cut(s)	916, 1314, 1624, 1639, 1666, 1876, 2107, 2137, 2290
Bsp19I	CCATGG	1 cut(s)	123
BspACI	CCGC	6 cut(s)	570, 787, 1243, 1795, 1918, 2255
BspANI	GGCC	3 cut(s)	1955, 2347, 2575
BspEI	TCCGGA	1 cut(s)	682
BspFNI	CGCG	1 cut(s)	1797
BspHI	TCATGA	1 cut(s)	1071
BspMAI	CTGCAG	2 cut(s)	1966, 2211
BspMI	ACCTGC	3 cut(s)	1585, 1762, 2605
BspPI	GGATC	8 cut(s)	911, 924, 1309, 1661, 1871, 1884, 2145, 2285
BspQI	GCTCTTC	3 cut(s)	725, 945, 1516
BspT104I	TTCGAA	1 cut(s)	2375
BspT107I	GGYRCC	2 cut(s)	4, 2392
BspTNI	GGTCTC	3 cut(s)	113, 1780, 2156
BsrDI	GCAATG	4 cut(s)	813, 1238, 1372, 2051
BsrGI	TGTACA	1 cut(s)	835
BsrI	ACTGG	9 cut(s)	34, 440, 563, 1025, 1182, 1494, 1536, 1688, 2031
BssMI	GATC	9 cut(s)	916, 1314, 1624, 1639, 1666, 1876, 2107, 2137, 2290
BssNI	GRCGYC	1 cut(s)	663
BssT1I	CCWWGG	3 cut(s)	123, 2226, 2491
Bst2UI	CCWGG	7 cut(s)	504, 825, 2048, 2299, 2457, 2529, 2553
Bst4CI	ACNGT	7 cut(s)	13, 462, 697, 727, 1469, 2074, 2093
Bst6I	CTCTTC	9 cut(s)	725, 945, 1348, 1516, 1962, 2382, 2412, 2442, 2655
BstACI	GRCGYC	1 cut(s)	663
BstAUI	TGTACA	1 cut(s)	835
BstBAI	YACGTR	1 cut(s)	1559
BstBI	TTCGAA	1 cut(s)	2375
BstC8I	GCNNGC	5 cut(s)	1939, 1943, 1947, 2044, 2577
BstDSI	CCRYGG	1 cut(s)	123
BstENI	CCTNNNNNAGG	1 cut(s)	2495
BstF5I	GGATG	7 cut(s)	652, 706, 1195, 1351, 1390, 2263, 2467
BstFNI	CGCG	1 cut(s)	1797
BstHHI	GCGC	4 cut(s)	199, 478, 544, 1799
BstKTI	GATC	9 cut(s)	919, 1317, 1627, 1642, 1669, 1879, 2110, 2140, 2293
BstMAI	GTCTC	5 cut(s)	113, 291, 845, 1780, 2156
BstMBI	GATC	9 cut(s)	916, 1314, 1624, 1639, 1666, 1876, 2107, 2137, 2290
BstMCI	CGRYCG	1 cut(s)	2076
BstNI	CCWGG	7 cut(s)	504, 825, 2048, 2299, 2457, 2529, 2553
BstNSI	RCATGY	1 cut(s)	548
BstSFI	CTRYAG	4 cut(s)	657, 1434, 1962, 2207
BstSLI	GKGCMC	1 cut(s)	725
BstUI	CGCG	1 cut(s)	1797
BstX2I	RGATCY	5 cut(s)	916, 1314, 1666, 1876, 2107
BstYI	RGATCY	5 cut(s)	916, 1314, 1666, 1876, 2107
Bsu36I	CCTNAGG	1 cut(s)	480
BsuI	GTATCC	1 cut(s)	746
BsuRI	GGCC	3 cut(s)	1955, 2347, 2575
BtgI	CCRYGG	1 cut(s)	123
BtsCI	GGATG	7 cut(s)	652, 706, 1195, 1351, 1390, 2263, 2467
BtsI	GCAGTG	2 cut(s)	424, 1346
BtsIMutI	CAGTG	6 cut(s)	27, 424, 723, 1189, 1225, 1346
BveI	ACCTGC	3 cut(s)	1585, 1762, 2605
Cac8I	GCNNGC	5 cut(s)	1939, 1943, 1947, 2044, 2577
CaiI	CAGNNNCTG	1 cut(s)	1997
CciI	TCATGA	1 cut(s)	1071
CfoI	GCGC	4 cut(s)	199, 478, 544, 1799
CseI	GACGC	2 cut(s)	173, 862
Csp6I	GTAC	3 cut(s)	836, 1805, 2393
CviAII	CATG	9 cut(s)	124, 370, 545, 1072, 1356, 1372, 2101, 2654, 2675
CviQI	GTAC	3 cut(s)	836, 1805, 2393
DpnI	GATC	9 cut(s)	918, 1316, 1626, 1641, 1668, 1878, 2109, 2139, 2292
DpnII	GATC	9 cut(s)	916, 1314, 1624, 1639, 1666, 1876, 2107, 2137, 2290
DraI	TTTAAA	1 cut(s)	1837
DriI	GACNNNNNGTC	1 cut(s)	440
Eam1104I	CTCTTC	9 cut(s)	725, 945, 1348, 1516, 1962, 2382, 2412, 2442, 2655
Eam1105I	GACNNNNNGTC	1 cut(s)	440
EarI	CTCTTC	9 cut(s)	725, 945, 1348, 1516, 1962, 2382, 2412, 2442, 2655
EciI	GGCGGA	1 cut(s)	2270
Ecl136II	GAGCTC	1 cut(s)	497
Eco130I	CCWWGG	3 cut(s)	123, 2226, 2491
Eco147I	AGGCCT	1 cut(s)	2347
Eco24I	GRGCYC	1 cut(s)	499
Eco31I	GGTCTC	3 cut(s)	113, 1780, 2156
Eco47I	GGWCC	9 cut(s)	340, 346, 2369, 2423, 2453, 2477, 2501, 2525, 2549
Eco53kI	GAGCTC	1 cut(s)	497
Eco57I	CTGAAG	5 cut(s)	254, 335, 1527, 2007, 2025
Eco72I	CACGTG	1 cut(s)	1559
Eco81I	CCTNAGG	1 cut(s)	480
EcoICRI	GAGCTC	1 cut(s)	497
EcoNI	CCTNNNNNAGG	1 cut(s)	2495
EcoO109I	RGGNCCY	6 cut(s)	346, 2369, 2423, 2453, 2549, 2573
EcoRII	CCWGG	7 cut(s)	502, 823, 2046, 2297, 2455, 2527, 2551
EcoT14I	CCWWGG	3 cut(s)	123, 2226, 2491
EcoT22I	ATGCAT	2 cut(s)	218, 1070
EcoT38I	GRGCYC	1 cut(s)	499
ErhI	CCWWGG	3 cut(s)	123, 2226, 2491
Esp3I	CGTCTC	1 cut(s)	845
FaeI	CATG	9 cut(s)	127, 373, 548, 1075, 1359, 1375, 2104, 2657, 2678
FaqI	GGGAC	7 cut(s)	359, 1670, 2436, 2466, 2490, 2514, 2538
FatI	CATG	9 cut(s)	123, 369, 544, 1071, 1355, 1371, 2100, 2653, 2674
FauNDI	CATATG	1 cut(s)	634
FblI	GTMKAC	1 cut(s)	660
FokI	GGATG	7 cut(s)	639, 693, 1202, 1338, 1397, 2270, 2474
FriOI	GRGCYC	1 cut(s)	499
FspBI	CTAG	4 cut(s)	399, 1518, 2010, 2111
FspI	TGCGCA	1 cut(s)	543
GlaI	GCGC	4 cut(s)	198, 477, 543, 1798
GsaI	CCCAGC	1 cut(s)	1124
GsuI	CTGGAG	3 cut(s)	423, 1477, 2048
HaeIII	GGCC	3 cut(s)	1955, 2347, 2575
HapII	CCGG	7 cut(s)	98, 343, 683, 1328, 2171, 2480, 2504
HgaI	GACGC	2 cut(s)	173, 862
HhaI	GCGC	4 cut(s)	199, 478, 544, 1799
Hin1I	GRCGYC	1 cut(s)	663
Hin1II	CATG	9 cut(s)	127, 373, 548, 1075, 1359, 1375, 2104, 2657, 2678
Hin6I	GCGC	4 cut(s)	197, 476, 542, 1797
HinP1I	GCGC	4 cut(s)	197, 476, 542, 1797
HincII	GTYRAC	1 cut(s)	2329
HindII	GTYRAC	1 cut(s)	2329
HindIII	AAGCTT	4 cut(s)	899, 1247, 1423, 1569
HpaII	CCGG	7 cut(s)	98, 343, 683, 1328, 2171, 2480, 2504
HphI	GGTGA	6 cut(s)	1181, 1566, 1658, 1745, 1877, 2141
Hpy166II	GTNNAC	6 cut(s)	163, 451, 518, 661, 1736, 2329
Hpy188III	TCNNGA	8 cut(s)	153, 279, 667, 683, 1072, 1611, 1880, 2111
Hpy8I	GTNNAC	6 cut(s)	163, 451, 518, 661, 1736, 2329
Hpy99I	CGWCG	1 cut(s)	668
HpyCH4III	ACNGT	7 cut(s)	13, 462, 697, 727, 1469, 2074, 2093
HpyCH4IV	ACGT	2 cut(s)	663, 1558
HpySE526I	ACGT	2 cut(s)	663, 1558
Hsp92I	GRCGYC	1 cut(s)	663
Hsp92II	CATG	9 cut(s)	127, 373, 548, 1075, 1359, 1375, 2104, 2657, 2678
HspAI	GCGC	4 cut(s)	197, 476, 542, 1797
Kpn2I	TCCGGA	1 cut(s)	682
KpnI	GGTACC	1 cut(s)	2396
Kzo9I	GATC	9 cut(s)	916, 1314, 1624, 1639, 1666, 1876, 2107, 2137, 2290
LguI	GCTCTTC	3 cut(s)	725, 945, 1516
LmnI	GCTCC	9 cut(s)	328, 502, 1159, 1417, 1496, 1613, 1762, 2173, 2230
LweI	GCATC	5 cut(s)	715, 1077, 1360, 1399, 1441
MaeI	CTAG	4 cut(s)	399, 1518, 2010, 2111
MaeII	ACGT	2 cut(s)	663, 1558
MaeIII	GTNAC	3 cut(s)	57, 107, 2129
MalI	GATC	9 cut(s)	918, 1316, 1626, 1641, 1668, 1878, 2109, 2139, 2292
MboI	GATC	9 cut(s)	916, 1314, 1624, 1639, 1666, 1876, 2107, 2137, 2290
MflI	RGATCY	5 cut(s)	916, 1314, 1666, 1876, 2107
MhlI	GDGCHC	3 cut(s)	499, 725, 1759
MlyI	GAGTC	3 cut(s)	560, 1523, 2672
MmeI	TCCRAC	1 cut(s)	1854
Mph1103I	ATGCAT	2 cut(s)	218, 1070
MroI	TCCGGA	1 cut(s)	682
MseI	TTAA	8 cut(s)	702, 767, 1062, 1154, 1320, 1836, 2082, 2610
MslI	CAYNNNNRTG	3 cut(s)	633, 1167, 2679
MspA1I	CMGCKG	2 cut(s)	274, 1802
MspI	CCGG	7 cut(s)	98, 343, 683, 1328, 2171, 2480, 2504
Mva1269I	GAATGC	1 cut(s)	2176
MvaI	CCWGG	7 cut(s)	504, 825, 2048, 2299, 2457, 2529, 2553
MvnI	CGCG	1 cut(s)	1797
NciI	CCSGG	5 cut(s)	344, 1329, 2171, 2481, 2505
NcoI	CCATGG	1 cut(s)	123
NdeI	CATATG	1 cut(s)	634
NdeII	GATC	9 cut(s)	916, 1314, 1624, 1639, 1666, 1876, 2107, 2137, 2290
NlaIII	CATG	9 cut(s)	127, 373, 548, 1075, 1359, 1375, 2104, 2657, 2678
NmeAIII	GCCGAG	1 cut(s)	1975
NmuCI	GTSAC	3 cut(s)	57, 107, 2129
NsbI	TGCGCA	1 cut(s)	543
NsiI	ATGCAT	2 cut(s)	218, 1070
NspI	RCATGY	1 cut(s)	548
NspV	TTCGAA	1 cut(s)	2375
PagI	TCATGA	1 cut(s)	1071
PaqCI	CACCTGC	1 cut(s)	1585
PceI	AGGCCT	1 cut(s)	2347
PciSI	GCTCTTC	3 cut(s)	725, 945, 1516
PcsI	WCGNNNNNNNCGW	2 cut(s)	188, 2328
PctI	GAATGC	1 cut(s)	2176
PfeI	GAWTC	9 cut(s)	131, 188, 1112, 1502, 1523, 1553, 1649, 1813, 2097
PflFI	GACNNNGTC	1 cut(s)	2333
PflMI	CCANNNNNTGG	1 cut(s)	1676
PfoI	TCCNGGA	1 cut(s)	342
PleI	GAGTC	3 cut(s)	559, 1523, 2671
PmaCI	CACGTG	1 cut(s)	1559
PmlI	CACGTG	1 cut(s)	1559
PpsI	GAGTC	3 cut(s)	559, 1523, 2671
Ppu21I	YACGTR	1 cut(s)	1559
PpuMI	RGGWCCY	5 cut(s)	346, 2369, 2423, 2453, 2549
PshBI	ATTAAT	1 cut(s)	2082
Psp124BI	GAGCTC	1 cut(s)	499
Psp5II	RGGWCCY	5 cut(s)	346, 2369, 2423, 2453, 2549
Psp6I	CCWGG	7 cut(s)	502, 823, 2046, 2297, 2455, 2527, 2551
PspCI	CACGTG	1 cut(s)	1559
PspFI	CCCAGC	1 cut(s)	1120
PspGI	CCWGG	7 cut(s)	502, 823, 2046, 2297, 2455, 2527, 2551
PspPPI	RGGWCCY	5 cut(s)	346, 2369, 2423, 2453, 2549
PstI	CTGCAG	2 cut(s)	1966, 2211
PstNI	CAGNNNCTG	1 cut(s)	1997
PsuI	RGATCY	5 cut(s)	916, 1314, 1666, 1876, 2107
PsyI	GACNNNGTC	1 cut(s)	2333
PvuII	CAGCTG	2 cut(s)	274, 1802
RsaI	GTAC	3 cut(s)	837, 1806, 2394
RsaNI	GTAC	3 cut(s)	836, 1805, 2393
RseI	CAYNNNNRTG	3 cut(s)	633, 1167, 2679
SacI	GAGCTC	1 cut(s)	499
SapI	GCTCTTC	3 cut(s)	725, 945, 1516
SaqAI	TTAA	8 cut(s)	702, 767, 1062, 1154, 1320, 1836, 2082, 2610
Sau3AI	GATC	9 cut(s)	916, 1314, 1624, 1639, 1666, 1876, 2107, 2137, 2290
SchI	GAGTC	3 cut(s)	560, 1523, 2672
SduI	GDGCHC	3 cut(s)	499, 725, 1759
SfaNI	GCATC	5 cut(s)	715, 1077, 1360, 1399, 1441
SfcI	CTRYAG	4 cut(s)	657, 1434, 1962, 2207
SfuI	TTCGAA	1 cut(s)	2375
SinI	GGWCC	9 cut(s)	340, 346, 2369, 2423, 2453, 2477, 2501, 2525, 2549
SmiMI	CAYNNNNRTG	3 cut(s)	633, 1167, 2679
SmlI	CTYRAG	1 cut(s)	1483
SmoI	CTYRAG	1 cut(s)	1483
SseBI	AGGCCT	1 cut(s)	2347
SsiI	CCGC	6 cut(s)	570, 787, 1243, 1795, 1918, 2255
SspI	AATATT	4 cut(s)	68, 679, 866, 1833
SspMI	CTAG	4 cut(s)	399, 1518, 2010, 2111
SstI	GAGCTC	1 cut(s)	499
StuI	AGGCCT	1 cut(s)	2347
StyI	CCWWGG	3 cut(s)	123, 2226, 2491
TaaI	ACNGT	7 cut(s)	13, 462, 697, 727, 1469, 2074, 2093
TaiI	ACGT	2 cut(s)	666, 1561
TaqI	TCGA	7 cut(s)	444, 1725, 2076, 2095, 2337, 2375, 2712
TaqII	GACCGA	1 cut(s)	1115
TatI	WGTACW	2 cut(s)	835, 1804
TauI	GCSGC	3 cut(s)	572, 790, 1921
TfiI	GAWTC	9 cut(s)	131, 188, 1112, 1502, 1523, 1553, 1649, 1813, 2097
Tru1I	TTAA	8 cut(s)	702, 767, 1062, 1154, 1320, 1836, 2082, 2610
Tru9I	TTAA	8 cut(s)	702, 767, 1062, 1154, 1320, 1836, 2082, 2610
TscAI	CASTG	6 cut(s)	34, 424, 730, 1189, 1225, 1353
TseFI	GTSAC	3 cut(s)	57, 107, 2129
Tsp45I	GTSAC	3 cut(s)	57, 107, 2129
TspDTI	ATGAA	8 cut(s)	605, 638, 932, 1272, 1311, 2089, 2143, 2264
TspGWI	ACGGA	3 cut(s)	544, 962, 2418
TspRI	CASTG	6 cut(s)	34, 424, 730, 1189, 1225, 1353
Tth111I	GACNNNGTC	1 cut(s)	2333
Van91I	CCANNNNNTGG	1 cut(s)	1676
VpaK11BI	GGWCC	9 cut(s)	340, 346, 2369, 2423, 2453, 2477, 2501, 2525, 2549
VspI	ATTAAT	1 cut(s)	2082
XagI	CCTNNNNNAGG	1 cut(s)	2495
XapI	RAATTY	4 cut(s)	322, 1472, 1618, 2302
XbaI	TCTAGA	1 cut(s)	2110
XceI	RCATGY	1 cut(s)	548
XmiI	GTMKAC	1 cut(s)	660
XspI	CTAG	4 cut(s)	399, 1518, 2010, 2111
ZraI	GACGTC	1 cut(s)	664
Zsp2I	ATGCAT	2 cut(s)	218, 1070

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.