Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8422347.1

Orthogroup ID

OG0002714

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1422

Gene Structure 1421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8422347.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1055 bp

tgtcccagttgagcagaaatccccgtctaaaccaatttctgtcgaggagggtgaacgacaagaggaggagagtgctccacctgagaggcaggtctcccctgaaaagctctaccgcgcagctgtactgaggaatcggtttgcagacacaatatttaaagccaaagagaaggcacttgaaaagggtgataagttggatccagaaaaattgcgaattgagagagaggaacttgaaaggcggcgtaaagaagaaaaagcacggttgcaagccgaggccagagctgcagaagaggctcggaaaaaggctgaagcagaagctgcagctgaagctagaaggcaaagggaactggagagagaagctgcacgccaggcattgcaaatgatggaaaagacggtcgaaattaatgagaacagtcgattcatggaagatctagaaatgtttagggctggtgacgaggatcatttaccacatttcattgaggagaccagcccggagcattctcagaatgagcttggtagtttcaagctgcagggtagctgtaatcccttggagcaacttggtttatttatgaaggcggatgatgatatagaaatagaggaggaagaaattgatcctcccaggaattttacagaaccagcaaacgaagttgacgatgtcgaggagagaccttcaaacgatgttgtggaagaagaaccttcgaacgaagttgaagaggtaccttcaaacagagttgatgttgaagagggaccttcaaacgaggttgatgttgaagagggacctgggaatgatattggagagggaccggggaatgacattggagagggaccggggaatgatatgggagaaggacctgggaatgatttgggggagggaccagggaacgatatgggagaaggacttgggaatgatatgggggaggggcctgctaatgatgttgaattacctgcaaacgagattaaagaggtttctgcaaatgatgttgcagagggaacagaaaatcatgttgaagagtcagcaaatcatgttgatgagagaactgaaaatgaggttgaagatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0008150 GO:0009266 GO:0009267 GO:0009409 GO:0009605 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0033993 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051365 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0080090 GO:0097305 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

351

Amino Acids

39.1

Weight (kDa)

4.29

Isoelectric Point (pI)

58.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63320 AT5G63320 AT5G63320
fragaria_vesca	FvH4_2g09340 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g15310 FvH4_7g03961
malus_domestica	MD06G1147900.v1.1 MD14G1162200.v1.1
prunus_persica	Prupe.5G154800_v2.0.a1
pyrus_communis	pycom06g13720 pycom06g13730 pycom14g13510 pycom72g00010
rosa_chinensis	RchiOBHm_Chr7g0190781
rosa_laevigata	RLG00000004496 RLG00000004499
rosa_multiflora	Rmu_co8422347.1_g000001 Rmu_sc0002819.1_g000007
rosa_roxburghii	Rroxscaffold_3G00264320
rosa_rugosa	Rorug06G0506700 Rorug06G0506700 Rorug06G0506700 Rorug06G0506800
rosa_samantha	Rh7AG113500 Rh7BG116000 Rh7CG118600 Rh7DG117500
rosa_wichuraiana	Rw7G009910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	80, 950
Acc65I	GGTACC	1 cut(s)	713
AccB1I	GGYRCC	1 cut(s)	713
AccII	CGCG	1 cut(s)	115
AciI	CCGC	3 cut(s)	113, 236, 573
AclWI	GGATC	4 cut(s)	189, 202, 463, 603
AcsI	RAATTY	1 cut(s)	620
AcuI	CTGAAG	2 cut(s)	325, 343
AfaI	GTAC	2 cut(s)	124, 715
AjnI	CCWGG	5 cut(s)	364, 615, 776, 848, 872
Alw21I	GWGCWC	1 cut(s)	77
Alw26I	GTCTC	3 cut(s)	98, 474, 656
AlwI	GGATC	4 cut(s)	189, 202, 463, 603
AlwNI	CAGNNNCTG	1 cut(s)	315
AoxI	GGCC	2 cut(s)	271, 918
ApeKI	GCWGC	6 cut(s)	117, 279, 315, 318, 357, 524
ApoI	RAATTY	1 cut(s)	620
AseI	ATTAAT	1 cut(s)	400
Asp718I	GGTACC	1 cut(s)	713
AspLEI	GCGC	1 cut(s)	117
AspS9I	GGNCC	7 cut(s)	744, 774, 798, 822, 846, 870, 918
AsuC2I	CCSGG	3 cut(s)	489, 802, 826
AsuHPI	GGTGA	3 cut(s)	63, 195, 459
AsuII	TTCGAA	1 cut(s)	696
AvaII	GGWCC	6 cut(s)	744, 774, 798, 822, 846, 870
BamHI	GGATCC	1 cut(s)	194
BanI	GGYRCC	1 cut(s)	713
Bbv12I	GWGCWC	1 cut(s)	77
BbvI	GCAGC	6 cut(s)	129, 266, 302, 330, 344, 511
BccI	CCATC	1 cut(s)	374
BciT130I	CCWGG	5 cut(s)	366, 617, 778, 850, 874
BcnI	CCSGG	3 cut(s)	489, 802, 826
BcoDI	GTCTC	3 cut(s)	98, 474, 656
BfaI	CTAG	2 cut(s)	328, 429
BfmI	CTRYAG	3 cut(s)	280, 316, 525
BfuAI	ACCTGC	2 cut(s)	80, 950
BglII	AGATCT	1 cut(s)	425
BisI	GCNGC	7 cut(s)	118, 237, 280, 316, 319, 358, 525
BlsI	GCNGC	7 cut(s)	119, 238, 281, 317, 320, 359, 526
Bme1390I	CCNGG	8 cut(s)	366, 489, 617, 778, 802, 826, 850, 874
Bme18I	GGWCC	6 cut(s)	744, 774, 798, 822, 846, 870
BmgT120I	GGNCC	7 cut(s)	744, 774, 798, 822, 846, 870, 918
BmiI	GGNNCC	8 cut(s)	196, 715, 745, 775, 799, 823, 871, 919
BmrFI	CCNGG	8 cut(s)	366, 489, 617, 778, 802, 826, 850, 874
BpmI	CTGGAG	1 cut(s)	366
Bpu14I	TTCGAA	1 cut(s)	696
BpuMI	CCSGG	3 cut(s)	489, 802, 826
BsaI	GGTCTC	3 cut(s)	98, 474, 656
BsaJI	CCNNGG	8 cut(s)	268, 544, 615, 777, 801, 825, 849, 873
Bse1I	ACTGG	2 cut(s)	6, 349
Bse3DI	GCAATG	1 cut(s)	369
BseBI	CCWGG	5 cut(s)	366, 617, 778, 850, 874
BseDI	CCNNGG	8 cut(s)	268, 544, 615, 777, 801, 825, 849, 873
BseGI	GGATG	1 cut(s)	581
BseMI	GCAATG	1 cut(s)	369
BseMII	CTCAG	3 cut(s)	73, 117, 513
BseNI	ACTGG	2 cut(s)	6, 349
BseRI	GAGGAG	6 cut(s)	60, 78, 81, 492, 609, 672
BseXI	GCAGC	6 cut(s)	129, 266, 302, 330, 344, 511
BsgI	GTGCAG	1 cut(s)	343
Bsh1236I	CGCG	1 cut(s)	115
Bsh1285I	CGRYCG	1 cut(s)	394
BshFI	GGCC	2 cut(s)	273, 920
BshNI	GGYRCC	1 cut(s)	713
BsiEI	CGRYCG	1 cut(s)	394
BsiHKAI	GWGCWC	1 cut(s)	77
BsiSI	CCGG	3 cut(s)	489, 801, 825
BslFI	GGGAC	5 cut(s)	757, 787, 811, 835, 883
BsmAI	GTCTC	3 cut(s)	98, 474, 656
BsmFI	GGGAC	5 cut(s)	757, 787, 811, 835, 883
BsmI	GAATGC	1 cut(s)	494
BsnI	GGCC	2 cut(s)	273, 920
Bso31I	GGTCTC	3 cut(s)	98, 474, 656
Bsp119I	TTCGAA	1 cut(s)	696
Bsp1286I	GDGCHC	1 cut(s)	77
Bsp143I	GATC	4 cut(s)	194, 425, 455, 608
BspACI	CCGC	3 cut(s)	113, 236, 573
BspANI	GGCC	2 cut(s)	273, 920
BspCNI	CTCAG	3 cut(s)	74, 118, 512
BspFNI	CGCG	1 cut(s)	115
BspLI	GGNNCC	8 cut(s)	196, 715, 745, 775, 799, 823, 871, 919
BspMAI	CTGCAG	3 cut(s)	284, 320, 529
BspMI	ACCTGC	2 cut(s)	80, 950
BspPI	GGATC	4 cut(s)	189, 202, 463, 603
BspT104I	TTCGAA	1 cut(s)	696
BspT107I	GGYRCC	1 cut(s)	713
BspTNI	GGTCTC	3 cut(s)	98, 474, 656
BsrDI	GCAATG	1 cut(s)	369
BsrI	ACTGG	2 cut(s)	6, 349
BssECI	CCNNGG	8 cut(s)	268, 544, 615, 777, 801, 825, 849, 873
BssMI	GATC	4 cut(s)	194, 425, 455, 608
BssT1I	CCWWGG	1 cut(s)	544
Bst2UI	CCWGG	5 cut(s)	366, 617, 778, 850, 874
Bst4CI	ACNGT	3 cut(s)	259, 392, 411
Bst6I	CTCTTC	5 cut(s)	280, 703, 733, 763, 1000
BstAPI	GCANNNNNTGC	1 cut(s)	315
BstBI	TTCGAA	1 cut(s)	696
BstC8I	GCNNGC	3 cut(s)	265, 362, 922
BstDEI	CTNAG	3 cut(s)	82, 126, 499
BstF5I	GGATG	1 cut(s)	581
BstFNI	CGCG	1 cut(s)	115
BstHHI	GCGC	1 cut(s)	117
BstKTI	GATC	4 cut(s)	197, 428, 458, 611
BstMAI	GTCTC	3 cut(s)	98, 474, 656
BstMBI	GATC	4 cut(s)	194, 425, 455, 608
BstMCI	CGRYCG	1 cut(s)	394
BstMWI	GCNNNNNNNGC	5 cut(s)	279, 288, 315, 324, 366
BstNI	CCWGG	5 cut(s)	366, 617, 778, 850, 874
BstSCI	CCNGG	8 cut(s)	364, 487, 615, 776, 800, 824, 848, 872
BstSFI	CTRYAG	3 cut(s)	280, 316, 525
BstUI	CGCG	1 cut(s)	115
BstV1I	GCAGC	6 cut(s)	129, 266, 302, 330, 344, 511
BstX2I	RGATCY	2 cut(s)	194, 425
BstYI	RGATCY	2 cut(s)	194, 425
BsuRI	GGCC	2 cut(s)	273, 920
BtsCI	GGATG	1 cut(s)	581
BveI	ACCTGC	2 cut(s)	80, 950
Cac8I	GCNNGC	3 cut(s)	265, 362, 922
CaiI	CAGNNNCTG	1 cut(s)	315
CfoI	GCGC	1 cut(s)	117
Cfr13I	GGNCC	7 cut(s)	744, 774, 798, 822, 846, 870, 918
Csp6I	GTAC	2 cut(s)	123, 714
CviAII	CATG	3 cut(s)	419, 999, 1020
CviQI	GTAC	2 cut(s)	123, 714
DdeI	CTNAG	3 cut(s)	82, 126, 499
DpnI	GATC	4 cut(s)	196, 427, 457, 610
DpnII	GATC	4 cut(s)	194, 425, 455, 608
DraI	TTTAAA	1 cut(s)	155
Eam1104I	CTCTTC	5 cut(s)	280, 703, 733, 763, 1000
EarI	CTCTTC	5 cut(s)	280, 703, 733, 763, 1000
EciI	GGCGGA	1 cut(s)	588
Eco130I	CCWWGG	1 cut(s)	544
Eco31I	GGTCTC	3 cut(s)	98, 474, 656
Eco47I	GGWCC	6 cut(s)	744, 774, 798, 822, 846, 870
Eco57I	CTGAAG	2 cut(s)	325, 343
EcoO109I	RGGNCCY	4 cut(s)	744, 774, 846, 918
EcoRII	CCWGG	5 cut(s)	364, 615, 776, 848, 872
EcoT14I	CCWWGG	1 cut(s)	544
ErhI	CCWWGG	1 cut(s)	544
FaeI	CATG	3 cut(s)	422, 1002, 1023
FaiI	YATR	8 cut(s)	420, 567, 585, 837, 885, 909, 1000, 1021
FaqI	GGGAC	5 cut(s)	757, 787, 811, 835, 883
FatI	CATG	3 cut(s)	418, 998, 1019
Fnu4HI	GCNGC	7 cut(s)	118, 237, 280, 316, 319, 358, 525
FokI	GGATG	1 cut(s)	588
Fsp4HI	GCNGC	7 cut(s)	118, 237, 280, 316, 319, 358, 525
FspBI	CTAG	2 cut(s)	328, 429
GlaI	GCGC	1 cut(s)	116
GluI	GCNGC	7 cut(s)	118, 237, 280, 316, 319, 358, 525
GsuI	CTGGAG	1 cut(s)	366
HaeIII	GGCC	2 cut(s)	273, 920
HapII	CCGG	3 cut(s)	489, 801, 825
HhaI	GCGC	1 cut(s)	117
Hin1II	CATG	3 cut(s)	422, 1002, 1023
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
HincII	GTYRAC	1 cut(s)	647
HindII	GTYRAC	1 cut(s)	647
HinfI	GANTC	3 cut(s)	131, 415, 1008
HpaII	CCGG	3 cut(s)	489, 801, 825
HphI	GGTGA	3 cut(s)	63, 195, 459
Hpy166II	GTNNAC	2 cut(s)	54, 647
Hpy188I	TCNGA	2 cut(s)	295, 502
Hpy188III	TCNNGA	2 cut(s)	198, 429
Hpy8I	GTNNAC	2 cut(s)	54, 647
HpyAV	CCTTC	9 cut(s)	161, 325, 563, 676, 703, 727, 757, 837, 885
HpyCH4III	ACNGT	3 cut(s)	259, 392, 411
HpyF10VI	GCNNNNNNNGC	5 cut(s)	279, 288, 315, 324, 366
HpyF3I	CTNAG	3 cut(s)	82, 126, 499
Hsp92II	CATG	3 cut(s)	422, 1002, 1023
HspAI	GCGC	1 cut(s)	115
KpnI	GGTACC	1 cut(s)	717
Kzo9I	GATC	4 cut(s)	194, 425, 455, 608
LmnI	GCTCC	3 cut(s)	80, 491, 548
Lsp1109I	GCAGC	6 cut(s)	129, 266, 302, 330, 344, 511
MaeI	CTAG	2 cut(s)	328, 429
MaeIII	GTNAC	1 cut(s)	447
MalI	GATC	4 cut(s)	196, 427, 457, 610
MboI	GATC	4 cut(s)	194, 425, 455, 608
MflI	RGATCY	2 cut(s)	194, 425
MhlI	GDGCHC	1 cut(s)	77
MluCI	AATT	7 cut(s)	34, 204, 211, 397, 604, 620, 936
MlyI	GAGTC	1 cut(s)	1017
MmeI	TCCRAC	1 cut(s)	172
MseI	TTAA	3 cut(s)	154, 400, 955
MslI	CAYNNNNRTG	1 cut(s)	1024
MspA1I	CMGCKG	2 cut(s)	120, 321
MspI	CCGG	3 cut(s)	489, 801, 825
MspR9I	CCNGG	8 cut(s)	366, 489, 617, 778, 802, 826, 850, 874
Mva1269I	GAATGC	1 cut(s)	494
MvaI	CCWGG	5 cut(s)	366, 617, 778, 850, 874
MvnI	CGCG	1 cut(s)	115
MwoI	GCNNNNNNNGC	5 cut(s)	279, 288, 315, 324, 366
NciI	CCSGG	3 cut(s)	489, 802, 826
NdeII	GATC	4 cut(s)	194, 425, 455, 608
NlaIII	CATG	3 cut(s)	422, 1002, 1023
NlaIV	GGNNCC	8 cut(s)	196, 715, 745, 775, 799, 823, 871, 919
NmeAIII	GCCGAG	1 cut(s)	293
NmuCI	GTSAC	1 cut(s)	447
NspV	TTCGAA	1 cut(s)	696
PcsI	WCGNNNNNNNCGW	1 cut(s)	646
PctI	GAATGC	1 cut(s)	494
PfeI	GAWTC	2 cut(s)	131, 415
PflFI	GACNNNGTC	1 cut(s)	651
PkrI	GCNGC	7 cut(s)	119, 238, 281, 317, 320, 359, 526
PleI	GAGTC	1 cut(s)	1016
PpsI	GAGTC	1 cut(s)	1016
PpuMI	RGGWCCY	3 cut(s)	744, 774, 846
PshBI	ATTAAT	1 cut(s)	400
Psp5II	RGGWCCY	3 cut(s)	744, 774, 846
Psp6I	CCWGG	5 cut(s)	364, 615, 776, 848, 872
PspGI	CCWGG	5 cut(s)	364, 615, 776, 848, 872
PspN4I	GGNNCC	8 cut(s)	196, 715, 745, 775, 799, 823, 871, 919
PspPI	GGNCC	7 cut(s)	744, 774, 798, 822, 846, 870, 918
PspPPI	RGGWCCY	3 cut(s)	744, 774, 846
PstI	CTGCAG	3 cut(s)	284, 320, 529
PstNI	CAGNNNCTG	1 cut(s)	315
PsuI	RGATCY	2 cut(s)	194, 425
PsyI	GACNNNGTC	1 cut(s)	651
PvuII	CAGCTG	2 cut(s)	120, 321
RsaI	GTAC	2 cut(s)	124, 715
RsaNI	GTAC	2 cut(s)	123, 714
RseI	CAYNNNNRTG	1 cut(s)	1024
SaqAI	TTAA	3 cut(s)	154, 400, 955
SatI	GCNGC	7 cut(s)	118, 237, 280, 316, 319, 358, 525
Sau3AI	GATC	4 cut(s)	194, 425, 455, 608
Sau96I	GGNCC	7 cut(s)	744, 774, 798, 822, 846, 870, 918
SchI	GAGTC	1 cut(s)	1017
ScrFI	CCNGG	8 cut(s)	366, 489, 617, 778, 802, 826, 850, 874
SduI	GDGCHC	1 cut(s)	77
SfcI	CTRYAG	3 cut(s)	280, 316, 525
SfuI	TTCGAA	1 cut(s)	696
SinI	GGWCC	6 cut(s)	744, 774, 798, 822, 846, 870
SmiMI	CAYNNNNRTG	1 cut(s)	1024
Sse9I	AATT	7 cut(s)	34, 204, 211, 397, 604, 620, 936
SsiI	CCGC	3 cut(s)	113, 236, 573
SspI	AATATT	1 cut(s)	151
SspMI	CTAG	2 cut(s)	328, 429
StyD4I	CCNGG	8 cut(s)	364, 487, 615, 776, 800, 824, 848, 872
StyI	CCWWGG	1 cut(s)	544
TaaI	ACNGT	3 cut(s)	259, 392, 411
TaqI	TCGA	5 cut(s)	43, 394, 413, 655, 696
TasI	AATT	7 cut(s)	34, 204, 211, 397, 604, 620, 936
TatI	WGTACW	1 cut(s)	122
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	2 cut(s)	131, 415
Tru1I	TTAA	3 cut(s)	154, 400, 955
Tru9I	TTAA	3 cut(s)	154, 400, 955
TseFI	GTSAC	1 cut(s)	447
TseI	GCWGC	6 cut(s)	117, 279, 315, 318, 357, 524
Tsp45I	GTSAC	1 cut(s)	447
TspDTI	ATGAA	3 cut(s)	407, 461, 582
Tth111I	GACNNNGTC	1 cut(s)	651
VpaK11BI	GGWCC	6 cut(s)	744, 774, 798, 822, 846, 870
VspI	ATTAAT	1 cut(s)	400
XapI	RAATTY	1 cut(s)	620
XbaI	TCTAGA	1 cut(s)	428
XspI	CTAG	2 cut(s)	328, 429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.