Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004569

Physical Location & Seq

Genomic Coordinates Forward (+)

11389727 .. 11397615

Gene Structure 7889 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g12990.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGCAACCGAAATCTTGTCAGCCGCATCCACCCGATGTGATAACCTGCAAAACGAGTAAAGACCCAAATGACTCTCCATTCGATTTCTTGGGTGTTTTCTGCGATAGTATCATAGCTGGTGGTGCTGCTGGTGTTGTTGTGGAAGCCGCATTGTACCCAATTGACACTATAAAAACTCGATTACAGGTTGCTCATGCTGGGGGAAAGATCATGTTGAAGGGTCTGTATTCGGGATTGGCTGGAAACCTTGCTGGTGTTTTACCGGCTTCTGCTATATTTGTTGGTGTCTATGAACCTACAAAGCAGAAATTGCTGAAGTCTCTCCCAGAAAATCTCAGTGCTTTAGCTCATCTGACTGCAGGTGCTATTGGAGGTGCTGCTTCTTCTATTGTACGGGTGCCAACAGAGGTTGTCAAGCAAAGGATGCAAACTGCGCAGTTTGCTTCTGCCCCAGATGCTGTTCGCCTTATTATTGCTAAGGAGGGTTTCAAAGGTCTTTACACGGGGTACGGATCATTCCTATTGCGAGATTTACCATTTGATGCAGTTCAGTTTTGCATCTATGAGCAACTTCGAATAGGATTTAAACTAGCGGCACGAAGAGATCTGAACGACCCTGAGGTTGCTATGGTTGGTGCTTTTGCTGGTGCAATAACTGGAGCTATAACTACTCCTCTTGATGTGATAAAAACGAGATTAATGGTTCAGGGATCGGAAAACCAGTACCGAGGAATTTGTGACTGTGTTAGGACCATAATGAGAGAAGAAGGAAATCATGCTCTCTGGAAGGGCATTGGGCCACGAGTACTGTGGATAGGTATTGGAGGTTCAATTTTCTTTGGTGTTCTTGAAAGGACGAAGCAAATACTTGAGCAAAGGCGCATCAAGAATGAGGATTCCAAGCATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0008150 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

304

Amino Acids

32.67

Weight (kDa)

9.07

Isoelectric Point (pI)

28.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	41 - 123	4.4e-19	Mitochondrial carrier protein
Mito_carr	PF00153	139 - 222	1e-24	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34065 AT1G34065
fragaria_vesca	FvH4_2g12990 FvH4_2g12990 FvH4_2g12990 FvH4_2g12990
malus_domestica	MD05G1033900.v1.1
prunus_persica	Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1
pyrus_communis	pycom05g02450
rosa_chinensis	RchiOBHm_Chr6g0274151
rosa_laevigata	RLG00000013576
rosa_multiflora	Rmu_sc0000939.1_g000009 Rmu_sc0001939.1_g000020 Rmu_sc0002577.1_g000002
rosa_roxburghii	Rroxscaffold_7G00194510
rosa_rugosa	Rorug06G0079400 Rorug06G0079500
rosa_samantha	Rh4CG128700 Rh6AG194700 Rh6CG199100 Rh6CG438900 Rh6DG190600
rosa_wichuraiana	Rw0G007910 Rw5G039420 Rw6G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	350
Acc16I	TGCGCA	1 cut(s)	435
Acc36I	ACCTGC	2 cut(s)	53, 350
AccB1I	GGYRCC	1 cut(s)	397
AciI	CCGC	3 cut(s)	23, 147, 593
AclWI	GGATC	2 cut(s)	520, 718
AcsI	RAATTY	1 cut(s)	732
AcuI	CTGAAG	1 cut(s)	335
AfaI	GTAC	5 cut(s)	155, 393, 509, 725, 807
AgsI	TTSAA	4 cut(s)	217, 490, 831, 851
AluBI	AGCT	3 cut(s)	116, 347, 662
AluI	AGCT	3 cut(s)	116, 347, 662
Alw26I	GTCTC	1 cut(s)	324
AlwI	GGATC	2 cut(s)	520, 718
AlwNI	CAGNNNCTG	1 cut(s)	458
AoxI	GGCC	1 cut(s)	797
ApeKI	GCWGC	2 cut(s)	125, 377
ApoI	RAATTY	1 cut(s)	732
ArsI	GACNNNNNNTTYG	2 cut(s)	62, 94
AseI	ATTAAT	1 cut(s)	698
AspLEI	GCGC	2 cut(s)	436, 882
AspS9I	GGNCC	2 cut(s)	750, 797
AsuII	TTCGAA	1 cut(s)	574
AvaII	GGWCC	1 cut(s)	750
AxyI	CCTNAGG	1 cut(s)	618
BanI	GGYRCC	1 cut(s)	397
BauI	CACGAG	1 cut(s)	801
BbvI	GCAGC	2 cut(s)	112, 364
BcoDI	GTCTC	1 cut(s)	324
BfaI	CTAG	1 cut(s)	590
BfmI	CTRYAG	1 cut(s)	357
BfuAI	ACCTGC	2 cut(s)	53, 350
BglII	AGATCT	1 cut(s)	604
BisI	GCNGC	5 cut(s)	23, 126, 147, 378, 594
BlsI	GCNGC	5 cut(s)	24, 127, 148, 379, 595
BmcAI	AGTACT	1 cut(s)	807
Bme18I	GGWCC	1 cut(s)	750
BmgT120I	GGNCC	2 cut(s)	750, 797
BmiI	GGNNCC	1 cut(s)	399
BmsI	GCATC	6 cut(s)	34, 414, 445, 532, 567, 891
BpmI	CTGGAG	1 cut(s)	678
Bpu10I	CCTNAGC	1 cut(s)	477
Bpu14I	TTCGAA	1 cut(s)	574
BpuEI	CTTGAG	1 cut(s)	890
BsaJI	CCNNGG	1 cut(s)	727
Bse118I	RCCGGY	1 cut(s)	262
Bse1I	ACTGG	2 cut(s)	661, 721
Bse21I	CCTNAGG	1 cut(s)	618
BseDI	CCNNGG	1 cut(s)	727
BseGI	GGATG	2 cut(s)	25, 429
BseMII	CTCAG	2 cut(s)	349, 609
BseNI	ACTGG	2 cut(s)	661, 721
BseRI	GAGGAG	1 cut(s)	663
BseXI	GCAGC	2 cut(s)	112, 364
BseYI	CCCAGC	1 cut(s)	197
BshFI	GGCC	1 cut(s)	799
BshNI	GGYRCC	1 cut(s)	397
BsiSI	CCGG	1 cut(s)	263
BsmAI	GTCTC	1 cut(s)	324
BsnI	GGCC	1 cut(s)	799
Bsp119I	TTCGAA	1 cut(s)	574
Bsp143I	GATC	4 cut(s)	207, 512, 604, 710
BspACI	CCGC	3 cut(s)	23, 147, 593
BspANI	GGCC	1 cut(s)	799
BspCNI	CTCAG	2 cut(s)	348, 610
BspLI	GGNNCC	1 cut(s)	399
BspMAI	CTGCAG	1 cut(s)	361
BspMI	ACCTGC	2 cut(s)	53, 350
BspPI	GGATC	2 cut(s)	520, 718
BspT104I	TTCGAA	1 cut(s)	574
BspT107I	GGYRCC	1 cut(s)	397
BsrFI	RCCGGY	1 cut(s)	262
BsrI	ACTGG	2 cut(s)	661, 721
BssAI	RCCGGY	1 cut(s)	262
BssECI	CCNNGG	1 cut(s)	727
BssMI	GATC	4 cut(s)	207, 512, 604, 710
BssSI	CACGAG	1 cut(s)	801
Bst2BI	CACGAG	1 cut(s)	801
Bst4CI	ACNGT	2 cut(s)	743, 810
Bst6I	CTCTTC	1 cut(s)	595
BstAPI	GCANNNNNTGC	2 cut(s)	310, 424
BstBI	TTCGAA	1 cut(s)	574
BstDEI	CTNAG	3 cut(s)	335, 477, 618
BstF5I	GGATG	2 cut(s)	25, 429
BstHHI	GCGC	2 cut(s)	436, 882
BstKTI	GATC	4 cut(s)	210, 515, 607, 713
BstMAI	GTCTC	1 cut(s)	324
BstMBI	GATC	4 cut(s)	207, 512, 604, 710
BstMWI	GCNNNNNNNGC	6 cut(s)	122, 310, 424, 433, 440, 455
BstSFI	CTRYAG	1 cut(s)	357
BstV1I	GCAGC	2 cut(s)	112, 364
BstX2I	RGATCY	1 cut(s)	604
BstYI	RGATCY	1 cut(s)	604
Bsu36I	CCTNAGG	1 cut(s)	618
BsuRI	GGCC	1 cut(s)	799
BtsCI	GGATG	2 cut(s)	25, 429
BtsIMutI	CAGTG	1 cut(s)	343
BveI	ACCTGC	2 cut(s)	53, 350
CaiI	CAGNNNCTG	1 cut(s)	458
CfoI	GCGC	2 cut(s)	436, 882
Cfr10I	RCCGGY	1 cut(s)	262
Cfr13I	GGNCC	2 cut(s)	750, 797
Csp6I	GTAC	5 cut(s)	154, 392, 508, 724, 806
CviAII	CATG	3 cut(s)	194, 211, 776
CviJI	RGCY	8 cut(s)	22, 116, 146, 239, 266, 347, 662, 799
CviKI_1	RGCY	8 cut(s)	22, 116, 146, 239, 266, 347, 662, 799
CviQI	GTAC	5 cut(s)	154, 392, 508, 724, 806
DdeI	CTNAG	3 cut(s)	335, 477, 618
DpnI	GATC	4 cut(s)	209, 514, 606, 712
DpnII	GATC	4 cut(s)	207, 512, 604, 710
DraI	TTTAAA	1 cut(s)	586
Eam1104I	CTCTTC	1 cut(s)	595
EarI	CTCTTC	1 cut(s)	595
Eco47I	GGWCC	1 cut(s)	750
Eco57I	CTGAAG	1 cut(s)	335
Eco81I	CCTNAGG	1 cut(s)	618
FaeI	CATG	3 cut(s)	197, 214, 779
FatI	CATG	3 cut(s)	193, 210, 775
Fnu4HI	GCNGC	5 cut(s)	23, 126, 147, 378, 594
FokI	GGATG	2 cut(s)	12, 436
Fsp4HI	GCNGC	5 cut(s)	23, 126, 147, 378, 594
FspBI	CTAG	1 cut(s)	590
FspI	TGCGCA	1 cut(s)	435
GlaI	GCGC	2 cut(s)	435, 881
GluI	GCNGC	5 cut(s)	23, 126, 147, 378, 594
GsaI	CCCAGC	1 cut(s)	201
GsuI	CTGGAG	1 cut(s)	678
HaeIII	GGCC	1 cut(s)	799
HapII	CCGG	1 cut(s)	263
HhaI	GCGC	2 cut(s)	436, 882
Hin1II	CATG	3 cut(s)	197, 214, 779
Hin6I	GCGC	2 cut(s)	434, 880
HinP1I	GCGC	2 cut(s)	434, 880
HinfI	GANTC	2 cut(s)	71, 896
HpaII	CCGG	1 cut(s)	263
Hpy188I	TCNGA	3 cut(s)	354, 609, 715
Hpy188III	TCNNGA	5 cut(s)	231, 677, 784, 848, 886
HpyAV	CCTTC	3 cut(s)	211, 761, 781
HpyCH4III	ACNGT	2 cut(s)	743, 810
HpyCH4V	TGCA	7 cut(s)	4, 48, 359, 427, 545, 558, 650
HpyF10VI	GCNNNNNNNGC	6 cut(s)	122, 310, 424, 433, 440, 455
HpyF3I	CTNAG	3 cut(s)	335, 477, 618
Hsp92II	CATG	3 cut(s)	197, 214, 779
HspAI	GCGC	2 cut(s)	434, 880
Kzo9I	GATC	4 cut(s)	207, 512, 604, 710
LmnI	GCTCC	1 cut(s)	659
Lsp1109I	GCAGC	2 cut(s)	112, 364
LweI	GCATC	6 cut(s)	34, 414, 445, 532, 567, 891
MaeI	CTAG	1 cut(s)	590
MaeIII	GTNAC	1 cut(s)	737
MalI	GATC	4 cut(s)	209, 514, 606, 712
MboI	GATC	4 cut(s)	207, 512, 604, 710
MboII	GAAGA	3 cut(s)	375, 612, 776
MfeI	CAATTG	1 cut(s)	159
MflI	RGATCY	1 cut(s)	604
MluCI	AATT	4 cut(s)	159, 308, 732, 831
MlyI	GAGTC	1 cut(s)	65
MnlI	CCTC	8 cut(s)	365, 400, 475, 613, 684, 722, 818, 886
MseI	TTAA	2 cut(s)	585, 698
MspI	CCGG	1 cut(s)	263
MunI	CAATTG	1 cut(s)	159
MwoI	GCNNNNNNNGC	6 cut(s)	122, 310, 424, 433, 440, 455
NdeII	GATC	4 cut(s)	207, 512, 604, 710
NlaIII	CATG	3 cut(s)	197, 214, 779
NlaIV	GGNNCC	1 cut(s)	399
NmuCI	GTSAC	1 cut(s)	737
NsbI	TGCGCA	1 cut(s)	435
NspV	TTCGAA	1 cut(s)	574
PaqCI	CACCTGC	1 cut(s)	350
PfeI	GAWTC	1 cut(s)	896
PkrI	GCNGC	5 cut(s)	24, 127, 148, 379, 595
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
PshBI	ATTAAT	1 cut(s)	698
PspFI	CCCAGC	1 cut(s)	197
PspN4I	GGNNCC	1 cut(s)	399
PspPI	GGNCC	2 cut(s)	750, 797
PsrI	GAACNNNNNNTAC	2 cut(s)	811, 843
PstI	CTGCAG	1 cut(s)	361
PstNI	CAGNNNCTG	1 cut(s)	458
PsuI	RGATCY	1 cut(s)	604
RsaI	GTAC	5 cut(s)	155, 393, 509, 725, 807
RsaNI	GTAC	5 cut(s)	154, 392, 508, 724, 806
SaqAI	TTAA	2 cut(s)	585, 698
SatI	GCNGC	5 cut(s)	23, 126, 147, 378, 594
Sau3AI	GATC	4 cut(s)	207, 512, 604, 710
Sau96I	GGNCC	2 cut(s)	750, 797
ScaI	AGTACT	1 cut(s)	807
SchI	GAGTC	1 cut(s)	65
SfaNI	GCATC	6 cut(s)	34, 414, 445, 532, 567, 891
SfcI	CTRYAG	1 cut(s)	357
SfuI	TTCGAA	1 cut(s)	574
SinI	GGWCC	1 cut(s)	750
SmlI	CTYRAG	1 cut(s)	869
SmoI	CTYRAG	1 cut(s)	869
Sse9I	AATT	4 cut(s)	159, 308, 732, 831
SsiI	CCGC	3 cut(s)	23, 147, 593
SspMI	CTAG	1 cut(s)	590
TaaI	ACNGT	2 cut(s)	743, 810
TaqI	TCGA	3 cut(s)	81, 178, 574
TasI	AATT	4 cut(s)	159, 308, 732, 831
TatI	WGTACW	1 cut(s)	805
TauI	GCSGC	3 cut(s)	25, 149, 596
TfiI	GAWTC	1 cut(s)	896
Tru1I	TTAA	2 cut(s)	585, 698
Tru9I	TTAA	2 cut(s)	585, 698
TscAI	CASTG	1 cut(s)	343
TseFI	GTSAC	1 cut(s)	737
TseI	GCWGC	2 cut(s)	125, 377
Tsp45I	GTSAC	1 cut(s)	737
TspDTI	ATGAA	1 cut(s)	306
TspGWI	ACGGA	1 cut(s)	525
TspRI	CASTG	1 cut(s)	343
VpaK11BI	GGWCC	1 cut(s)	750
VspI	ATTAAT	1 cut(s)	698
XapI	RAATTY	1 cut(s)	732
XcmI	CCANNNNNNNNNTGG	1 cut(s)	807
XspI	CTAG	1 cut(s)	590
ZrmI	AGTACT	1 cut(s)	807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.