Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0004569

Physical Location & Seq

Genomic Coordinates Forward (+)

69518313 .. 69528396

Gene Structure 10084 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G039420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGAATACGCAGGGGCATAATTCATCTGCTTCTAGTACTTCAGAAGGCAATGACTTATACAAATTAGAGAATCTTAAAACTATGATAACTACGAGGCTCAAATTTAAATGGTTGTATTCAGACGACGTTCTTACGGCTTCTGCTATATTTGTTGGTGTATATGAACCTACGAAGCAGAAATTGCTGAAGTTACTCCCAGAAAATCTCAGTGCTTTAGCTCATTTGACTGCAGGTGCTATTGGAGGTGCTGCTTCTTCTATTGTACGAGTGCCAACAGAGGTTGTCAAGCAAAGGATGCAAACTGCGCAATTTGCTTCTGCCCCAGATGCTGTTCGCCTTATTCTTGCTAAAGAGGGTTTCAAAGGTCTTTATGCGGGGTACGGATCATTCCTATTGCGAGATTTACCATTTGATGCAGTTCAGTTTTGCATCTATGAGCAACTTCACATAGGGTTTAAACTAGCAGCACGAAGAGATCTGAATGACCCTGAGGTTGCTATGATTGGTGCTTTTTTTGGCTTGGGTGCTTTTGCTTGTTACCACTTTATCTATTCCCAGGTTGTAAAGCAAAGGATGCAAACTGCGCAATTTGCTTCTGCCCCAGATGCTATTTGCCTTATTCTTGCTAAAGAGGGTTTCAAAGGTCTTTATGCGCTGATGAAAGGACCTCGTTTGTACCCATTTGGCCACGGCCACCTAGTATTTAATAATATTATTTATTATTTAATGGAAAGGAAAATATTAAAAAACACAGTTGGGTACCCATTTTGCTACAGAATCCTAAAGTTGCCGTCCCTACATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0008150 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

268

Amino Acids

29.85

Weight (kDa)

9.38

Isoelectric Point (pI)

27.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	68 - 149	1.1e-18	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34065 AT1G34065
fragaria_vesca	FvH4_2g12990 FvH4_2g12990 FvH4_2g12990 FvH4_2g12990
malus_domestica	MD05G1033900.v1.1
prunus_persica	Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1
pyrus_communis	pycom05g02450
rosa_chinensis	RchiOBHm_Chr6g0274151
rosa_laevigata	RLG00000013576
rosa_multiflora	Rmu_sc0000939.1_g000009 Rmu_sc0001939.1_g000020 Rmu_sc0002577.1_g000002
rosa_roxburghii	Rroxscaffold_7G00194510
rosa_rugosa	Rorug06G0079400 Rorug06G0079500
rosa_samantha	Rh4CG128700 Rh6AG194700 Rh6CG199100 Rh6CG438900 Rh6DG190600
rosa_wichuraiana	Rw0G007910 Rw5G039420 Rw6G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	221
Acc16I	TGCGCA	2 cut(s)	306, 585
Acc36I	ACCTGC	1 cut(s)	221
Acc65I	GGTACC	1 cut(s)	759
AccB1I	GGYRCC	1 cut(s)	759
AciI	CCGC	1 cut(s)	374
AclWI	GGATC	1 cut(s)	391
AcoI	YGGCCR	2 cut(s)	685, 691
AcsI	RAATTY	1 cut(s)	101
AcuI	CTGAAG	2 cut(s)	24, 206
AfaI	GTAC	5 cut(s)	37, 264, 380, 677, 761
AgsI	TTSAA	2 cut(s)	361, 640
AjnI	CCWGG	1 cut(s)	555
AluBI	AGCT	1 cut(s)	218
AluI	AGCT	1 cut(s)	218
AlwI	GGATC	1 cut(s)	391
AlwNI	CAGNNNCTG	1 cut(s)	329
AoxI	GGCC	2 cut(s)	685, 691
ApeKI	GCWGC	2 cut(s)	248, 464
ApoI	RAATTY	1 cut(s)	101
Asp718I	GGTACC	1 cut(s)	759
AspLEI	GCGC	3 cut(s)	307, 586, 655
AspS9I	GGNCC	1 cut(s)	665
AvaII	GGWCC	1 cut(s)	665
AxyI	CCTNAGG	1 cut(s)	489
BalI	TGGCCA	1 cut(s)	687
BanI	GGYRCC	1 cut(s)	759
BbvI	GCAGC	2 cut(s)	235, 476
BceAI	ACGGC	3 cut(s)	150, 706, 775
BciT130I	CCWGG	1 cut(s)	557
BfaI	CTAG	3 cut(s)	33, 461, 698
BfmI	CTRYAG	2 cut(s)	228, 772
BfuAI	ACCTGC	1 cut(s)	221
BglII	AGATCT	1 cut(s)	475
BisI	GCNGC	2 cut(s)	249, 465
BlsI	GCNGC	2 cut(s)	250, 466
BmcAI	AGTACT	1 cut(s)	37
Bme1390I	CCNGG	1 cut(s)	557
Bme18I	GGWCC	1 cut(s)	665
BmgT120I	GGNCC	1 cut(s)	665
BmiI	GGNNCC	1 cut(s)	761
BmrFI	CCNGG	1 cut(s)	557
BmsI	GCATC	6 cut(s)	285, 316, 403, 438, 564, 595
BsaJI	CCNNGG	2 cut(s)	555, 688
Bse21I	CCTNAGG	1 cut(s)	489
Bse3DI	GCAATG	1 cut(s)	55
BseBI	CCWGG	1 cut(s)	557
BseDI	CCNNGG	2 cut(s)	555, 688
BseGI	GGATG	2 cut(s)	300, 579
BseMI	GCAATG	1 cut(s)	55
BseMII	CTCAG	2 cut(s)	220, 480
BseXI	GCAGC	2 cut(s)	235, 476
BshFI	GGCC	2 cut(s)	687, 693
BshNI	GGYRCC	1 cut(s)	759
BslFI	GGGAC	1 cut(s)	778
BsmFI	GGGAC	1 cut(s)	778
BsnI	GGCC	2 cut(s)	687, 693
Bsp143I	GATC	2 cut(s)	383, 475
BspACI	CCGC	1 cut(s)	374
BspANI	GGCC	2 cut(s)	687, 693
BspCNI	CTCAG	2 cut(s)	219, 481
BspLI	GGNNCC	1 cut(s)	761
BspMAI	CTGCAG	1 cut(s)	232
BspMI	ACCTGC	1 cut(s)	221
BspPI	GGATC	1 cut(s)	391
BspT107I	GGYRCC	1 cut(s)	759
BsrDI	GCAATG	1 cut(s)	55
BssECI	CCNNGG	2 cut(s)	555, 688
BssMI	GATC	2 cut(s)	383, 475
Bst2UI	CCWGG	1 cut(s)	557
Bst4CI	ACNGT	1 cut(s)	754
Bst6I	CTCTTC	1 cut(s)	466
BstAPI	GCANNNNNTGC	3 cut(s)	181, 295, 574
BstDEI	CTNAG	2 cut(s)	206, 489
BstDSI	CCRYGG	1 cut(s)	688
BstF5I	GGATG	2 cut(s)	300, 579
BstHHI	GCGC	3 cut(s)	307, 586, 655
BstKTI	GATC	2 cut(s)	386, 478
BstMBI	GATC	2 cut(s)	383, 475
BstMWI	GCNNNNNNNGC	9 cut(s)	181, 295, 304, 311, 326, 574, 583, 590, 605
BstNI	CCWGG	1 cut(s)	557
BstSCI	CCNGG	1 cut(s)	555
BstSFI	CTRYAG	2 cut(s)	228, 772
BstV1I	GCAGC	2 cut(s)	235, 476
BstX2I	RGATCY	1 cut(s)	475
BstYI	RGATCY	1 cut(s)	475
Bsu36I	CCTNAGG	1 cut(s)	489
BsuRI	GGCC	2 cut(s)	687, 693
BtgI	CCRYGG	1 cut(s)	688
BtsCI	GGATG	2 cut(s)	300, 579
BtsIMutI	CAGTG	1 cut(s)	214
BveI	ACCTGC	1 cut(s)	221
CaiI	CAGNNNCTG	1 cut(s)	329
CfoI	GCGC	3 cut(s)	307, 586, 655
Cfr13I	GGNCC	1 cut(s)	665
Csp6I	GTAC	5 cut(s)	36, 263, 379, 676, 760
CviJI	RGCY	6 cut(s)	97, 137, 218, 519, 687, 693
CviKI_1	RGCY	6 cut(s)	97, 137, 218, 519, 687, 693
CviQI	GTAC	5 cut(s)	36, 263, 379, 676, 760
DdeI	CTNAG	2 cut(s)	206, 489
DpnI	GATC	2 cut(s)	385, 477
DpnII	GATC	2 cut(s)	383, 475
DraI	TTTAAA	2 cut(s)	106, 457
EaeI	YGGCCR	2 cut(s)	685, 691
Eam1104I	CTCTTC	1 cut(s)	466
EarI	CTCTTC	1 cut(s)	466
Eco47I	GGWCC	1 cut(s)	665
Eco57I	CTGAAG	2 cut(s)	24, 206
Eco81I	CCTNAGG	1 cut(s)	489
EcoO109I	RGGNCCY	1 cut(s)	665
EcoRII	CCWGG	1 cut(s)	555
FaqI	GGGAC	1 cut(s)	778
FauI	CCCGC	1 cut(s)	367
FauNDI	CATATG	1 cut(s)	801
Fnu4HI	GCNGC	2 cut(s)	249, 465
FokI	GGATG	2 cut(s)	307, 586
Fsp4HI	GCNGC	2 cut(s)	249, 465
FspBI	CTAG	3 cut(s)	33, 461, 698
FspI	TGCGCA	2 cut(s)	306, 585
GlaI	GCGC	3 cut(s)	306, 585, 654
GluI	GCNGC	2 cut(s)	249, 465
HaeIII	GGCC	2 cut(s)	687, 693
HhaI	GCGC	3 cut(s)	307, 586, 655
Hin6I	GCGC	3 cut(s)	305, 584, 653
HinP1I	GCGC	3 cut(s)	305, 584, 653
HinfI	GANTC	2 cut(s)	70, 777
Hpy188I	TCNGA	3 cut(s)	43, 121, 480
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	1 cut(s)	38
HpyCH4III	ACNGT	1 cut(s)	754
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	5 cut(s)	230, 298, 416, 429, 577
HpyF10VI	GCNNNNNNNGC	9 cut(s)	181, 295, 304, 311, 326, 574, 583, 590, 605
HpyF3I	CTNAG	2 cut(s)	206, 489
HpySE526I	ACGT	1 cut(s)	126
HspAI	GCGC	3 cut(s)	305, 584, 653
KpnI	GGTACC	1 cut(s)	763
Kzo9I	GATC	2 cut(s)	383, 475
LpnPI	CCDG	7 cut(s)	210, 216, 336, 501, 542, 569, 615
Lsp1109I	GCAGC	2 cut(s)	235, 476
LweI	GCATC	6 cut(s)	285, 316, 403, 438, 564, 595
MaeI	CTAG	3 cut(s)	33, 461, 698
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	2 cut(s)	189, 536
MalI	GATC	2 cut(s)	385, 477
MboI	GATC	2 cut(s)	383, 475
MboII	GAAGA	2 cut(s)	246, 483
MflI	RGATCY	1 cut(s)	475
MlsI	TGGCCA	1 cut(s)	687
MluCI	AATT	6 cut(s)	19, 62, 101, 179, 308, 587
MluNI	TGGCCA	1 cut(s)	687
MnlI	CCTC	7 cut(s)	87, 236, 271, 346, 484, 625, 678
Mox20I	TGGCCA	1 cut(s)	687
MscI	TGGCCA	1 cut(s)	687
MseI	TTAA	6 cut(s)	75, 105, 456, 705, 725, 743
Msp20I	TGGCCA	1 cut(s)	687
MspR9I	CCNGG	1 cut(s)	557
MssI	GTTTAAAC	1 cut(s)	457
MvaI	CCWGG	1 cut(s)	557
MwoI	GCNNNNNNNGC	9 cut(s)	181, 295, 304, 311, 326, 574, 583, 590, 605
NdeI	CATATG	1 cut(s)	801
NdeII	GATC	2 cut(s)	383, 475
NlaIV	GGNNCC	1 cut(s)	761
NsbI	TGCGCA	2 cut(s)	306, 585
PaqCI	CACCTGC	1 cut(s)	221
PfeI	GAWTC	2 cut(s)	70, 777
PkrI	GCNGC	2 cut(s)	250, 466
PmeI	GTTTAAAC	1 cut(s)	457
PpuMI	RGGWCCY	1 cut(s)	665
Psp5II	RGGWCCY	1 cut(s)	665
Psp6I	CCWGG	1 cut(s)	555
PspGI	CCWGG	1 cut(s)	555
PspN4I	GGNNCC	1 cut(s)	761
PspPI	GGNCC	1 cut(s)	665
PspPPI	RGGWCCY	1 cut(s)	665
PstI	CTGCAG	1 cut(s)	232
PstNI	CAGNNNCTG	1 cut(s)	329
PsuI	RGATCY	1 cut(s)	475
RsaI	GTAC	5 cut(s)	37, 264, 380, 677, 761
RsaNI	GTAC	5 cut(s)	36, 263, 379, 676, 760
SaqAI	TTAA	6 cut(s)	75, 105, 456, 705, 725, 743
SatI	GCNGC	2 cut(s)	249, 465
Sau3AI	GATC	2 cut(s)	383, 475
Sau96I	GGNCC	1 cut(s)	665
ScaI	AGTACT	1 cut(s)	37
ScrFI	CCNGG	1 cut(s)	557
SfaNI	GCATC	6 cut(s)	285, 316, 403, 438, 564, 595
SfcI	CTRYAG	2 cut(s)	228, 772
SinI	GGWCC	1 cut(s)	665
SmiI	ATTTAAAT	1 cut(s)	106
Sse9I	AATT	6 cut(s)	19, 62, 101, 179, 308, 587
SsiI	CCGC	1 cut(s)	374
SspI	AATATT	2 cut(s)	712, 741
SspMI	CTAG	3 cut(s)	33, 461, 698
StyD4I	CCNGG	1 cut(s)	555
SwaI	ATTTAAAT	1 cut(s)	106
TaaI	ACNGT	1 cut(s)	754
TaiI	ACGT	1 cut(s)	129
TasI	AATT	6 cut(s)	19, 62, 101, 179, 308, 587
TatI	WGTACW	1 cut(s)	35
TfiI	GAWTC	2 cut(s)	70, 777
Tru1I	TTAA	6 cut(s)	75, 105, 456, 705, 725, 743
Tru9I	TTAA	6 cut(s)	75, 105, 456, 705, 725, 743
TscAI	CASTG	1 cut(s)	214
TseI	GCWGC	2 cut(s)	248, 464
TspDTI	ATGAA	4 cut(s)	12, 17, 177, 674
TspGWI	ACGGA	1 cut(s)	396
TspRI	CASTG	1 cut(s)	214
VpaK11BI	GGWCC	1 cut(s)	665
XapI	RAATTY	1 cut(s)	101
XspI	CTAG	3 cut(s)	33, 461, 698
ZrmI	AGTACT	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.