Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004569

Physical Location & Seq

Genomic Coordinates Reverse (-)

10632174 .. 10632453

Gene Structure 280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0079400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGAATGCTTGTTAATGGTTGGGTTATGGTGCACTCACCCAAAAAGCAAGGAGAGACCAAAAGCAGGACAAGTAATTGAGGTTCTTCGACTTGAAGCACCATTGCTGGAACTCCCAGCGGACATGTATGATCATCATCTTCTGCCTCAACTTCAACAACATGCTGTTTCCTCTCAGTGGGTCGCTAAAGTAGTACAACAACAACCACCAATCAGTTTCAAGGGCAACATAAAGGAGGTGGAGTTGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0008150 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

83

Amino Acids

9.42

Weight (kDa)

6.39

Isoelectric Point (pI)

66.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34065 AT1G34065
fragaria_vesca	FvH4_2g12990 FvH4_2g12990 FvH4_2g12990 FvH4_2g12990
malus_domestica	MD05G1033900.v1.1
prunus_persica	Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1
pyrus_communis	pycom05g02450
rosa_chinensis	RchiOBHm_Chr6g0274151
rosa_laevigata	RLG00000013576
rosa_multiflora	Rmu_sc0000939.1_g000009 Rmu_sc0001939.1_g000020 Rmu_sc0002577.1_g000002
rosa_roxburghii	Rroxscaffold_7G00194510
rosa_rugosa	Rorug06G0079400 Rorug06G0079500
rosa_samantha	Rh4CG128700 Rh6AG194700 Rh6CG199100 Rh6CG438900 Rh6DG190600
rosa_wichuraiana	Rw0G007910 Rw5G039420 Rw6G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	119
AfaI	GTAC	1 cut(s)	195
AfiI	CCNNNNNNNGG	2 cut(s)	65, 177
AflIII	ACRYGT	1 cut(s)	123
AgsI	TTSAA	3 cut(s)	95, 155, 220
Alw21I	GWGCWC	1 cut(s)	35
Alw26I	GTCTC	1 cut(s)	49
Alw44I	GTGCAC	1 cut(s)	31
ApaLI	GTGCAC	1 cut(s)	31
AsuHPI	GGTGA	1 cut(s)	29
BaeGI	GKGCMC	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	35
BclI	TGATCA	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	49
BsaBI	GATNNNNATC	1 cut(s)	135
BsaI	GGTCTC	1 cut(s)	49
BsaXI	ACNNNNNCTCC	1 cut(s)	227
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 177
Bse3DI	GCAATG	1 cut(s)	101
Bse8I	GATNNNNATC	1 cut(s)	135
BseJI	GATNNNNATC	1 cut(s)	135
BseLI	CCNNNNNNNGG	2 cut(s)	65, 177
BseMI	GCAATG	1 cut(s)	101
BseMII	CTCAG	1 cut(s)	188
BseSI	GKGCMC	1 cut(s)	35
BseYI	CCCAGC	1 cut(s)	115
BsiHKAI	GWGCWC	1 cut(s)	35
BslI	CCNNNNNNNGG	2 cut(s)	65, 177
BsmAI	GTCTC	1 cut(s)	49
BsmI	GAATGC	1 cut(s)	11
Bso31I	GGTCTC	1 cut(s)	49
Bsp1286I	GDGCHC	1 cut(s)	35
Bsp143I	GATC	1 cut(s)	130
BspACI	CCGC	1 cut(s)	119
BspCNI	CTCAG	1 cut(s)	187
BspTNI	GGTCTC	1 cut(s)	49
BsrDI	GCAATG	1 cut(s)	101
BssMI	GATC	1 cut(s)	130
BstDEI	CTNAG	1 cut(s)	174
BstKTI	GATC	1 cut(s)	133
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	1 cut(s)	130
BstNSI	RCATGY	2 cut(s)	127, 164
BstSLI	GKGCMC	1 cut(s)	35
BtsIMutI	CAGTG	1 cut(s)	182
Csp6I	GTAC	1 cut(s)	194
CviAII	CATG	2 cut(s)	124, 161
CviJI	RGCY	1 cut(s)	248
CviKI_1	RGCY	1 cut(s)	248
CviQI	GTAC	1 cut(s)	194
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
Eco31I	GGTCTC	1 cut(s)	49
FaeI	CATG	2 cut(s)	127, 164
FaiI	YATR	5 cut(s)	28, 125, 129, 162, 230
FatI	CATG	2 cut(s)	123, 160
FbaI	TGATCA	1 cut(s)	130
GsaI	CCCAGC	1 cut(s)	119
Hin1II	CATG	2 cut(s)	127, 164
HphI	GGTGA	1 cut(s)	29
Hpy166II	GTNNAC	1 cut(s)	33
Hpy8I	GTNNAC	1 cut(s)	33
HpyCH4V	TGCA	1 cut(s)	33
HpyF3I	CTNAG	1 cut(s)	174
Hsp92II	CATG	2 cut(s)	127, 164
Ksp22I	TGATCA	1 cut(s)	130
Kzo9I	GATC	1 cut(s)	130
LpnPI	CCDG	3 cut(s)	51, 92, 129
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	2 cut(s)	77, 131
MhlI	GDGCHC	1 cut(s)	35
MluCI	AATT	1 cut(s)	75
MnlI	CCTC	4 cut(s)	73, 156, 181, 229
MseI	TTAA	2 cut(s)	14, 250
MspA1I	CMGCKG	1 cut(s)	119
Mva1269I	GAATGC	1 cut(s)	11
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	2 cut(s)	127, 164
NspI	RCATGY	2 cut(s)	127, 164
PciI	ACATGT	1 cut(s)	123
PctI	GAATGC	1 cut(s)	11
PscI	ACATGT	1 cut(s)	123
PspFI	CCCAGC	1 cut(s)	115
PsrI	GAACNNNNNNTAC	2 cut(s)	66, 98
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
SaqAI	TTAA	2 cut(s)	14, 250
Sau3AI	GATC	1 cut(s)	130
SduI	GDGCHC	1 cut(s)	35
SetI	ASST	2 cut(s)	84, 240
Sse9I	AATT	1 cut(s)	75
SsiI	CCGC	1 cut(s)	119
TaqI	TCGA	1 cut(s)	88
TasI	AATT	1 cut(s)	75
TatI	WGTACW	1 cut(s)	193
Tru1I	TTAA	2 cut(s)	14, 250
Tru9I	TTAA	2 cut(s)	14, 250
TscAI	CASTG	1 cut(s)	182
TspRI	CASTG	1 cut(s)	182
VneI	GTGCAC	1 cut(s)	31
XceI	RCATGY	2 cut(s)	127, 164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.