Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004569

Physical Location & Seq

Genomic Coordinates Reverse (-)

36428120 .. 36433656

Gene Structure 5537 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00194510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGCAAGCGAAATCTTGTGAGGCACATCCACCGGATGTGATAACCTGCAAAATGAGTAAGGAGTCAAATGACTCTCTGGCAATAGTCAGTGGCACGCCATTCGATTTCTTGGGTGTTTTCTGCGATAGTGTCGTAGCTGGTGGTGCTGCTGGTGTTGTTGCTGCTCATGCCGGAGGAAAAATTATGTTGAAGGGTCTATATTCGGGATTGGCTGGAAACCTTGCTGGTGTTTTACCGGCTTCTGCTATATTTGTTGGTGTATATGAACCTACGAAGCAGAAATTGCTGCAGTCACTCCCAGAAAATCTCAGTGCTTTAGCTCATTTGTGTACAAGATCAGGCCATTGTTATTTTAACAGGTATTCAGACATCAATCAGACTGCAGGTGCTATTGGAGGTGCTGCTTCTTCTATTGTACGAGTGCCAACAGAGGTTGTCAAGCAAAGGATGCAAACTGTGCAATTTGCTTCTGCCCCAGATGCTGTTCGCCTTATTCTTGCTAAAGAGGGTTTCAAAGGTCTTTATGCGGCACGAAGAGATCTGAACGACCCTGAGGTTGCTATGATTGGTGCTTTTGCTGGTGCAATAACTGGGGCTATAACTACTCCTCTTGATGTGATAAAAACAAGATTAATGGTTCAGGGATCAGAAAACCAGTACCAAGGAATTTGTGACTGTGTTAGGACCATAATGAGAGAAGAAGGAAGTCCTGCTTTCTGGAAGGGCATTGGGCCACGAGTACTGTGGATCGGTATCGGAGGTTCAATTTTCTTTGGAGTTCTTGAAAGAACGAAGCAAATACTTGAGCAGAGGCGCATCAGGGATCAGGAGTCCAAGCGTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0008150 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

281

Amino Acids

30.03

Weight (kDa)

8.95

Isoelectric Point (pI)

37.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	127 - 176	8.9e-08	Mitochondrial carrier protein
Mito_carr	PF00153	186 - 270	3.1e-24	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34065 AT1G34065
fragaria_vesca	FvH4_2g12990 FvH4_2g12990 FvH4_2g12990 FvH4_2g12990
malus_domestica	MD05G1033900.v1.1
prunus_persica	Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1
pyrus_communis	pycom05g02450
rosa_chinensis	RchiOBHm_Chr6g0274151
rosa_laevigata	RLG00000013576
rosa_multiflora	Rmu_sc0000939.1_g000009 Rmu_sc0001939.1_g000020 Rmu_sc0002577.1_g000002
rosa_roxburghii	Rroxscaffold_7G00194510
rosa_rugosa	Rorug06G0079400 Rorug06G0079500
rosa_samantha	Rh4CG128700 Rh6AG194700 Rh6CG199100 Rh6CG438900 Rh6DG190600
rosa_wichuraiana	Rw0G007910 Rw5G039420 Rw6G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	374
Acc36I	ACCTGC	2 cut(s)	53, 374
AciI	CCGC	1 cut(s)	527
AclWI	GGATC	3 cut(s)	652, 755, 831
AcsI	RAATTY	1 cut(s)	666
AfaI	GTAC	4 cut(s)	331, 417, 659, 741
AgsI	TTSAA	4 cut(s)	190, 514, 765, 785
AluBI	AGCT	2 cut(s)	137, 320
AluI	AGCT	2 cut(s)	137, 320
AlwI	GGATC	3 cut(s)	652, 755, 831
AlwNI	CAGNNNCTG	1 cut(s)	482
AoxI	GGCC	2 cut(s)	340, 731
ApeKI	GCWGC	4 cut(s)	146, 161, 286, 401
ApoI	RAATTY	1 cut(s)	666
AseI	ATTAAT	1 cut(s)	632
AspLEI	GCGC	1 cut(s)	816
AspS9I	GGNCC	2 cut(s)	684, 731
AvaII	GGWCC	1 cut(s)	684
AxyI	CCTNAGG	1 cut(s)	552
BauI	CACGAG	1 cut(s)	735
BbvI	GCAGC	4 cut(s)	133, 148, 273, 388
BcgI	CGANNNNNNTGC	2 cut(s)	82, 116
BfmI	CTRYAG	2 cut(s)	287, 381
BfuAI	ACCTGC	2 cut(s)	53, 374
BglII	AGATCT	1 cut(s)	538
BisI	GCNGC	5 cut(s)	147, 162, 287, 402, 528
BlsI	GCNGC	5 cut(s)	148, 163, 288, 403, 529
BmcAI	AGTACT	1 cut(s)	741
Bme18I	GGWCC	1 cut(s)	684
BmgT120I	GGNCC	2 cut(s)	684, 731
BmrI	ACTGGG	1 cut(s)	600
BmsI	GCATC	3 cut(s)	438, 469, 825
BmuI	ACTGGG	1 cut(s)	600
BpuEI	CTTGAG	1 cut(s)	824
BsaBI	GATNNNNATC	1 cut(s)	752
BsaJI	CCNNGG	1 cut(s)	661
BsaWI	WCCGGW	1 cut(s)	31
Bse118I	RCCGGY	1 cut(s)	235
Bse1I	ACTGG	2 cut(s)	595, 655
Bse21I	CCTNAGG	1 cut(s)	552
Bse8I	GATNNNNATC	1 cut(s)	752
BseDI	CCNNGG	1 cut(s)	661
BseGI	GGATG	3 cut(s)	25, 40, 453
BseJI	GATNNNNATC	1 cut(s)	752
BseMII	CTCAG	2 cut(s)	322, 543
BseNI	ACTGG	2 cut(s)	595, 655
BseRI	GAGGAG	1 cut(s)	597
BseXI	GCAGC	4 cut(s)	133, 148, 273, 388
BshFI	GGCC	2 cut(s)	342, 733
BsiSI	CCGG	3 cut(s)	32, 171, 236
BsnI	GGCC	2 cut(s)	342, 733
Bsp1407I	TGTACA	1 cut(s)	329
Bsp143I	GATC	5 cut(s)	335, 538, 644, 747, 823
BspACI	CCGC	1 cut(s)	527
BspANI	GGCC	2 cut(s)	342, 733
BspCNI	CTCAG	2 cut(s)	321, 544
BspMAI	CTGCAG	2 cut(s)	291, 385
BspMI	ACCTGC	2 cut(s)	53, 374
BspPI	GGATC	3 cut(s)	652, 755, 831
BsrFI	RCCGGY	1 cut(s)	235
BsrGI	TGTACA	1 cut(s)	329
BsrI	ACTGG	2 cut(s)	595, 655
BssAI	RCCGGY	1 cut(s)	235
BssECI	CCNNGG	1 cut(s)	661
BssMI	GATC	5 cut(s)	335, 538, 644, 747, 823
BssSI	CACGAG	1 cut(s)	735
BssT1I	CCWWGG	1 cut(s)	661
Bst2BI	CACGAG	1 cut(s)	735
Bst4CI	ACNGT	3 cut(s)	457, 677, 744
Bst6I	CTCTTC	1 cut(s)	529
BstAPI	GCANNNNNTGC	3 cut(s)	283, 448, 457
BstAUI	TGTACA	1 cut(s)	329
BstC8I	GCNNGC	2 cut(s)	6, 95
BstDEI	CTNAG	2 cut(s)	308, 552
BstF5I	GGATG	3 cut(s)	25, 40, 453
BstHHI	GCGC	1 cut(s)	816
BstKTI	GATC	5 cut(s)	338, 541, 647, 750, 826
BstMBI	GATC	5 cut(s)	335, 538, 644, 747, 823
BstMWI	GCNNNNNNNGC	6 cut(s)	143, 167, 283, 448, 457, 479
BstSFI	CTRYAG	2 cut(s)	287, 381
BstV1I	GCAGC	4 cut(s)	133, 148, 273, 388
BstX2I	RGATCY	1 cut(s)	538
BstYI	RGATCY	1 cut(s)	538
Bsu36I	CCTNAGG	1 cut(s)	552
BsuRI	GGCC	2 cut(s)	342, 733
BtsCI	GGATG	3 cut(s)	25, 40, 453
BtsIMutI	CAGTG	2 cut(s)	94, 316
BveI	ACCTGC	2 cut(s)	53, 374
Cac8I	GCNNGC	2 cut(s)	6, 95
CaiI	CAGNNNCTG	1 cut(s)	482
CfoI	GCGC	1 cut(s)	816
Cfr10I	RCCGGY	1 cut(s)	235
Cfr13I	GGNCC	2 cut(s)	684, 731
Csp6I	GTAC	4 cut(s)	330, 416, 658, 740
CviAII	CATG	1 cut(s)	167
CviJI	RGCY	7 cut(s)	137, 212, 239, 320, 342, 596, 733
CviKI_1	RGCY	7 cut(s)	137, 212, 239, 320, 342, 596, 733
CviQI	GTAC	4 cut(s)	330, 416, 658, 740
DdeI	CTNAG	2 cut(s)	308, 552
DpnI	GATC	5 cut(s)	337, 540, 646, 749, 825
DpnII	GATC	5 cut(s)	335, 538, 644, 747, 823
Eam1104I	CTCTTC	1 cut(s)	529
EarI	CTCTTC	1 cut(s)	529
Eco130I	CCWWGG	1 cut(s)	661
Eco47I	GGWCC	1 cut(s)	684
Eco81I	CCTNAGG	1 cut(s)	552
EcoT14I	CCWWGG	1 cut(s)	661
ErhI	CCWWGG	1 cut(s)	661
FaeI	CATG	1 cut(s)	170
FalI	AAGNNNNNCTT	2 cut(s)	697, 729
FatI	CATG	1 cut(s)	166
Fnu4HI	GCNGC	5 cut(s)	147, 162, 287, 402, 528
FokI	GGATG	3 cut(s)	12, 47, 460
Fsp4HI	GCNGC	5 cut(s)	147, 162, 287, 402, 528
GlaI	GCGC	1 cut(s)	815
GluI	GCNGC	5 cut(s)	147, 162, 287, 402, 528
HaeIII	GGCC	2 cut(s)	342, 733
HapII	CCGG	3 cut(s)	32, 171, 236
HhaI	GCGC	1 cut(s)	816
Hin1II	CATG	1 cut(s)	170
Hin6I	GCGC	1 cut(s)	814
HinP1I	GCGC	1 cut(s)	814
HinfI	GANTC	3 cut(s)	62, 71, 830
HpaII	CCGG	3 cut(s)	32, 171, 236
Hpy166II	GTNNAC	1 cut(s)	330
Hpy188I	TCNGA	5 cut(s)	367, 378, 543, 649, 758
Hpy188III	TCNNGA	5 cut(s)	204, 611, 718, 782, 827
Hpy8I	GTNNAC	1 cut(s)	330
HpyAV	CCTTC	3 cut(s)	184, 695, 715
HpyCH4III	ACNGT	3 cut(s)	457, 677, 744
HpyCH4V	TGCA	7 cut(s)	4, 48, 289, 383, 451, 460, 584
HpyF10VI	GCNNNNNNNGC	6 cut(s)	143, 167, 283, 448, 457, 479
HpyF3I	CTNAG	2 cut(s)	308, 552
Hsp92II	CATG	1 cut(s)	170
HspAI	GCGC	1 cut(s)	814
Kzo9I	GATC	5 cut(s)	335, 538, 644, 747, 823
Lsp1109I	GCAGC	4 cut(s)	133, 148, 273, 388
LweI	GCATC	3 cut(s)	438, 469, 825
MaeIII	GTNAC	3 cut(s)	291, 671, 839
MalI	GATC	5 cut(s)	337, 540, 646, 749, 825
MboI	GATC	5 cut(s)	335, 538, 644, 747, 823
MboII	GAAGA	3 cut(s)	399, 546, 710
MflI	RGATCY	1 cut(s)	538
MluCI	AATT	5 cut(s)	180, 281, 461, 666, 765
MlyI	GAGTC	3 cut(s)	65, 71, 839
MnlI	CCTC	9 cut(s)	13, 167, 389, 424, 499, 547, 618, 752, 804
MseI	TTAA	2 cut(s)	354, 632
MspI	CCGG	3 cut(s)	32, 171, 236
MwoI	GCNNNNNNNGC	6 cut(s)	143, 167, 283, 448, 457, 479
NdeII	GATC	5 cut(s)	335, 538, 644, 747, 823
NlaIII	CATG	1 cut(s)	170
NmuCI	GTSAC	2 cut(s)	291, 671
PaqCI	CACCTGC	1 cut(s)	374
PkrI	GCNGC	5 cut(s)	148, 163, 288, 403, 529
PleI	GAGTC	3 cut(s)	65, 70, 838
PpsI	GAGTC	3 cut(s)	65, 70, 838
PshBI	ATTAAT	1 cut(s)	632
PspPI	GGNCC	2 cut(s)	684, 731
PsrI	GAACNNNNNNTAC	2 cut(s)	745, 777
PstI	CTGCAG	2 cut(s)	291, 385
PstNI	CAGNNNCTG	1 cut(s)	482
PsuI	RGATCY	1 cut(s)	538
RsaI	GTAC	4 cut(s)	331, 417, 659, 741
RsaNI	GTAC	4 cut(s)	330, 416, 658, 740
SaqAI	TTAA	2 cut(s)	354, 632
SatI	GCNGC	5 cut(s)	147, 162, 287, 402, 528
Sau3AI	GATC	5 cut(s)	335, 538, 644, 747, 823
Sau96I	GGNCC	2 cut(s)	684, 731
ScaI	AGTACT	1 cut(s)	741
SchI	GAGTC	3 cut(s)	65, 71, 839
SfaNI	GCATC	3 cut(s)	438, 469, 825
SfcI	CTRYAG	2 cut(s)	287, 381
SinI	GGWCC	1 cut(s)	684
SmlI	CTYRAG	1 cut(s)	803
SmoI	CTYRAG	1 cut(s)	803
Sse9I	AATT	5 cut(s)	180, 281, 461, 666, 765
SsiI	CCGC	1 cut(s)	527
StyI	CCWWGG	1 cut(s)	661
TaaI	ACNGT	3 cut(s)	457, 677, 744
TaqI	TCGA	1 cut(s)	102
TasI	AATT	5 cut(s)	180, 281, 461, 666, 765
TatI	WGTACW	2 cut(s)	329, 739
TauI	GCSGC	1 cut(s)	530
Tru1I	TTAA	2 cut(s)	354, 632
Tru9I	TTAA	2 cut(s)	354, 632
TscAI	CASTG	2 cut(s)	94, 316
TseFI	GTSAC	2 cut(s)	291, 671
TseI	GCWGC	4 cut(s)	146, 161, 286, 401
Tsp45I	GTSAC	2 cut(s)	291, 671
TspDTI	ATGAA	1 cut(s)	279
TspRI	CASTG	2 cut(s)	94, 316
VpaK11BI	GGWCC	1 cut(s)	684
VspI	ATTAAT	1 cut(s)	632
XapI	RAATTY	1 cut(s)	666
XcmI	CCANNNNNNNNNTGG	1 cut(s)	741
ZrmI	AGTACT	1 cut(s)	741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.