Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0004569

Physical Location & Seq

Genomic Coordinates Forward (+)

33691124 .. 33697239

Gene Structure 6116 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G017010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGCAAGCGAAATCTTGTGAGGCACATCCACCGAATGTGATAACCTGCAAAATGAGTAAGGAGCCAAATGACTCTCCGGCAATAGTCAGTGGCACGCCATTCGATTTCTTGGGTGTTTTCTGCGATAGTGTCATAGCTGGTGGCGCTGCTGGTGTTGTTGTGGAAGCTGCATTATACCCAATTGACACGATAAAAACTCGATTGCAGGTTGCTCATGCCGGAGGAAAAATTATGTTGAAGGGTCTATATTCGGGATTGGCTGGAAACCTTGCTGGTGTTTTACCGGCTTCTGCTATATTTGTTGGTGTATATGAACCTACGAAGCAGAAATTGCTGAAGTCACTCCCAGAAAATCTCAGTGCTTTAGCTCATTTGACTGCAGGTGCTATTGGAGGTGTTGCTTCTTCTATTGTACGAGTGCCAACAGAGGTTGTCAAGCAAAGGATGCAAACTGCGCAATTTGCTTCTGCCCCAGATGTTGTTCGCCTTATTCTTGCTAAAGAGGGTTTCAAGGGTCTTTATGCGGGGTATGGATCATTCCTATTGCGAGATTTACCATTTGATGCAGTTCAGTTTTGCATCTATGAGCAACTTCACATAGGGTTTAAACTAGCGGCACGAAGAGATCTGAACGACCCTGAGGTTGCTATGATTGGTGCTTTTGCTGGTGCAATAACTGGGGCTATAACTACTCCTCTTGATGTGATAAAAACAAGATTAATGGTTCAGGGATCAGAAACCCAGTACCAAGGAATTTGTGACTGTGTTAGGACCATAATGAGAGAAGAAGGAAGTCCTGCTTTCTGGAAGGGCATTGGGCCACGAGTACTGTGGATAGGTATCGGAGGTTCAATTTTCTTTGGAGTTCTTGAAAGAACGAAGCAAATACTTGAGCAGAGGCGCATCAGTGATCAGGAGTCCAAGCGTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0008150 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

310

Amino Acids

33.22

Weight (kDa)

8.83

Isoelectric Point (pI)

35.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	42 - 113	5.1e-11	Mitochondrial carrier protein
Mito_carr	PF00153	118 - 199	2.3e-18	Mitochondrial carrier protein
Mito_carr	PF00153	216 - 299	3.8e-24	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34065 AT1G34065
fragaria_vesca	FvH4_2g12990 FvH4_2g12990 FvH4_2g12990 FvH4_2g12990
malus_domestica	MD05G1033900.v1.1
prunus_persica	Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1
pyrus_communis	pycom05g02450
rosa_chinensis	RchiOBHm_Chr6g0274151
rosa_laevigata	RLG00000013576
rosa_multiflora	Rmu_sc0000939.1_g000009 Rmu_sc0001939.1_g000020 Rmu_sc0002577.1_g000002
rosa_roxburghii	Rroxscaffold_7G00194510
rosa_rugosa	Rorug06G0079400 Rorug06G0079500
rosa_samantha	Rh4CG128700 Rh6AG194700 Rh6CG199100 Rh6CG438900 Rh6DG190600
rosa_wichuraiana	Rw0G007910 Rw5G039420 Rw6G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	371
Acc16I	TGCGCA	1 cut(s)	456
Acc36I	ACCTGC	3 cut(s)	53, 196, 371
AciI	CCGC	2 cut(s)	524, 614
AclWI	GGATC	2 cut(s)	541, 739
AcsI	RAATTY	1 cut(s)	753
AcuI	CTGAAG	1 cut(s)	356
AfaI	GTAC	3 cut(s)	414, 746, 828
AgsI	TTSAA	4 cut(s)	238, 511, 852, 872
AluBI	AGCT	3 cut(s)	137, 167, 368
AluI	AGCT	3 cut(s)	137, 167, 368
AlwI	GGATC	2 cut(s)	541, 739
AoxI	GGCC	1 cut(s)	818
ApeKI	GCWGC	2 cut(s)	146, 167
ApoI	RAATTY	1 cut(s)	753
AseI	ATTAAT	1 cut(s)	719
AspLEI	GCGC	3 cut(s)	146, 457, 903
AspS9I	GGNCC	2 cut(s)	771, 818
AvaII	GGWCC	1 cut(s)	771
AxyI	CCTNAGG	1 cut(s)	639
BauI	CACGAG	1 cut(s)	822
BbvI	GCAGC	2 cut(s)	133, 154
BcgI	CGANNNNNNTGC	2 cut(s)	82, 116
BclI	TGATCA	1 cut(s)	910
BfaI	CTAG	1 cut(s)	611
BfmI	CTRYAG	1 cut(s)	378
BfoI	RGCGCY	1 cut(s)	147
BfuAI	ACCTGC	3 cut(s)	53, 196, 371
BglII	AGATCT	1 cut(s)	625
BisI	GCNGC	3 cut(s)	147, 168, 615
BlsI	GCNGC	3 cut(s)	148, 169, 616
BmcAI	AGTACT	1 cut(s)	828
Bme18I	GGWCC	1 cut(s)	771
BmgT120I	GGNCC	2 cut(s)	771, 818
BmiI	GGNNCC	1 cut(s)	63
BmrI	ACTGGG	2 cut(s)	687, 736
BmsI	GCATC	4 cut(s)	435, 553, 588, 912
BmuI	ACTGGG	2 cut(s)	687, 736
BpuEI	CTTGAG	1 cut(s)	911
BsaBI	GATNNNNATC	1 cut(s)	839
BsaJI	CCNNGG	1 cut(s)	748
Bse118I	RCCGGY	1 cut(s)	283
Bse1I	ACTGG	2 cut(s)	682, 742
Bse21I	CCTNAGG	1 cut(s)	639
Bse8I	GATNNNNATC	1 cut(s)	839
BseDI	CCNNGG	1 cut(s)	748
BseGI	GGATG	2 cut(s)	25, 450
BseJI	GATNNNNATC	1 cut(s)	839
BseMII	CTCAG	2 cut(s)	370, 630
BseNI	ACTGG	2 cut(s)	682, 742
BseRI	GAGGAG	1 cut(s)	684
BseXI	GCAGC	2 cut(s)	133, 154
BshFI	GGCC	1 cut(s)	820
BsiSI	CCGG	3 cut(s)	77, 219, 284
BsnI	GGCC	1 cut(s)	820
Bsp143I	GATC	4 cut(s)	533, 625, 731, 910
BspACI	CCGC	2 cut(s)	524, 614
BspANI	GGCC	1 cut(s)	820
BspCNI	CTCAG	2 cut(s)	369, 631
BspLI	GGNNCC	1 cut(s)	63
BspMAI	CTGCAG	1 cut(s)	382
BspMI	ACCTGC	3 cut(s)	53, 196, 371
BspPI	GGATC	2 cut(s)	541, 739
BsrFI	RCCGGY	1 cut(s)	283
BsrI	ACTGG	2 cut(s)	682, 742
BssAI	RCCGGY	1 cut(s)	283
BssECI	CCNNGG	1 cut(s)	748
BssMI	GATC	4 cut(s)	533, 625, 731, 910
BssSI	CACGAG	1 cut(s)	822
BssT1I	CCWWGG	1 cut(s)	748
Bst2BI	CACGAG	1 cut(s)	822
Bst4CI	ACNGT	2 cut(s)	764, 831
Bst6I	CTCTTC	1 cut(s)	616
BstAPI	GCANNNNNTGC	2 cut(s)	331, 445
BstC8I	GCNNGC	2 cut(s)	6, 95
BstDEI	CTNAG	2 cut(s)	356, 639
BstF5I	GGATG	2 cut(s)	25, 450
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	3 cut(s)	146, 457, 903
BstKTI	GATC	4 cut(s)	536, 628, 734, 913
BstMBI	GATC	4 cut(s)	533, 625, 731, 910
BstMWI	GCNNNNNNNGC	5 cut(s)	143, 331, 445, 454, 461
BstSFI	CTRYAG	1 cut(s)	378
BstV1I	GCAGC	2 cut(s)	133, 154
BstX2I	RGATCY	1 cut(s)	625
BstYI	RGATCY	1 cut(s)	625
Bsu36I	CCTNAGG	1 cut(s)	639
BsuRI	GGCC	1 cut(s)	820
BtsCI	GGATG	2 cut(s)	25, 450
BtsIMutI	CAGTG	3 cut(s)	94, 364, 913
BveI	ACCTGC	3 cut(s)	53, 196, 371
Cac8I	GCNNGC	2 cut(s)	6, 95
CfoI	GCGC	3 cut(s)	146, 457, 903
Cfr10I	RCCGGY	1 cut(s)	283
Cfr13I	GGNCC	2 cut(s)	771, 818
Csp6I	GTAC	3 cut(s)	413, 745, 827
CviAII	CATG	1 cut(s)	215
CviJI	RGCY	8 cut(s)	64, 137, 167, 260, 287, 368, 683, 820
CviKI_1	RGCY	8 cut(s)	64, 137, 167, 260, 287, 368, 683, 820
CviQI	GTAC	3 cut(s)	413, 745, 827
DdeI	CTNAG	2 cut(s)	356, 639
DpnI	GATC	4 cut(s)	535, 627, 733, 912
DpnII	GATC	4 cut(s)	533, 625, 731, 910
DraI	TTTAAA	1 cut(s)	607
Eam1104I	CTCTTC	1 cut(s)	616
EarI	CTCTTC	1 cut(s)	616
Eco130I	CCWWGG	1 cut(s)	748
Eco47I	GGWCC	1 cut(s)	771
Eco57I	CTGAAG	1 cut(s)	356
Eco81I	CCTNAGG	1 cut(s)	639
EcoT14I	CCWWGG	1 cut(s)	748
ErhI	CCWWGG	1 cut(s)	748
FaeI	CATG	1 cut(s)	218
FalI	AAGNNNNNCTT	2 cut(s)	784, 816
FatI	CATG	1 cut(s)	214
FauI	CCCGC	1 cut(s)	517
FbaI	TGATCA	1 cut(s)	910
Fnu4HI	GCNGC	3 cut(s)	147, 168, 615
FokI	GGATG	2 cut(s)	12, 457
Fsp4HI	GCNGC	3 cut(s)	147, 168, 615
FspBI	CTAG	1 cut(s)	611
FspI	TGCGCA	1 cut(s)	456
GlaI	GCGC	3 cut(s)	145, 456, 902
GluI	GCNGC	3 cut(s)	147, 168, 615
HaeII	RGCGCY	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	820
HapII	CCGG	3 cut(s)	77, 219, 284
HhaI	GCGC	3 cut(s)	146, 457, 903
Hin1II	CATG	1 cut(s)	218
Hin6I	GCGC	3 cut(s)	144, 455, 901
HinP1I	GCGC	3 cut(s)	144, 455, 901
HinfI	GANTC	2 cut(s)	71, 917
HpaII	CCGG	3 cut(s)	77, 219, 284
Hpy188I	TCNGA	3 cut(s)	630, 736, 845
Hpy188III	TCNNGA	5 cut(s)	252, 698, 805, 869, 914
HpyAV	CCTTC	3 cut(s)	232, 782, 802
HpyCH4III	ACNGT	2 cut(s)	764, 831
HpyCH4V	TGCA	9 cut(s)	4, 48, 170, 205, 380, 448, 566, 579, 671
HpyF10VI	GCNNNNNNNGC	5 cut(s)	143, 331, 445, 454, 461
HpyF3I	CTNAG	2 cut(s)	356, 639
Hsp92II	CATG	1 cut(s)	218
HspAI	GCGC	3 cut(s)	144, 455, 901
Ksp22I	TGATCA	1 cut(s)	910
Kzo9I	GATC	4 cut(s)	533, 625, 731, 910
LmnI	GCTCC	1 cut(s)	61
Lsp1109I	GCAGC	2 cut(s)	133, 154
LweI	GCATC	4 cut(s)	435, 553, 588, 912
MaeI	CTAG	1 cut(s)	611
MaeIII	GTNAC	3 cut(s)	339, 758, 926
MalI	GATC	4 cut(s)	535, 627, 733, 912
MboI	GATC	4 cut(s)	533, 625, 731, 910
MboII	GAAGA	3 cut(s)	396, 633, 797
MfeI	CAATTG	1 cut(s)	180
MflI	RGATCY	1 cut(s)	625
MluCI	AATT	6 cut(s)	180, 228, 329, 458, 753, 852
MlyI	GAGTC	2 cut(s)	65, 926
MnlI	CCTC	9 cut(s)	13, 215, 386, 421, 496, 634, 705, 839, 891
MseI	TTAA	2 cut(s)	606, 719
MspI	CCGG	3 cut(s)	77, 219, 284
MssI	GTTTAAAC	1 cut(s)	607
MunI	CAATTG	1 cut(s)	180
MwoI	GCNNNNNNNGC	5 cut(s)	143, 331, 445, 454, 461
NdeII	GATC	4 cut(s)	533, 625, 731, 910
NlaIII	CATG	1 cut(s)	218
NlaIV	GGNNCC	1 cut(s)	63
NmuCI	GTSAC	2 cut(s)	339, 758
NsbI	TGCGCA	1 cut(s)	456
PaqCI	CACCTGC	1 cut(s)	371
PkrI	GCNGC	3 cut(s)	148, 169, 616
PleI	GAGTC	2 cut(s)	65, 925
PmeI	GTTTAAAC	1 cut(s)	607
PpsI	GAGTC	2 cut(s)	65, 925
PshBI	ATTAAT	1 cut(s)	719
PspN4I	GGNNCC	1 cut(s)	63
PspPI	GGNCC	2 cut(s)	771, 818
PsrI	GAACNNNNNNTAC	2 cut(s)	832, 864
PstI	CTGCAG	1 cut(s)	382
PsuI	RGATCY	1 cut(s)	625
RsaI	GTAC	3 cut(s)	414, 746, 828
RsaNI	GTAC	3 cut(s)	413, 745, 827
SaqAI	TTAA	2 cut(s)	606, 719
SatI	GCNGC	3 cut(s)	147, 168, 615
Sau3AI	GATC	4 cut(s)	533, 625, 731, 910
Sau96I	GGNCC	2 cut(s)	771, 818
ScaI	AGTACT	1 cut(s)	828
SchI	GAGTC	2 cut(s)	65, 926
SfaNI	GCATC	4 cut(s)	435, 553, 588, 912
SfcI	CTRYAG	1 cut(s)	378
SinI	GGWCC	1 cut(s)	771
SmlI	CTYRAG	1 cut(s)	890
SmoI	CTYRAG	1 cut(s)	890
Sse9I	AATT	6 cut(s)	180, 228, 329, 458, 753, 852
SsiI	CCGC	2 cut(s)	524, 614
SspMI	CTAG	1 cut(s)	611
StyI	CCWWGG	1 cut(s)	748
TaaI	ACNGT	2 cut(s)	764, 831
TaqI	TCGA	2 cut(s)	102, 199
TasI	AATT	6 cut(s)	180, 228, 329, 458, 753, 852
TatI	WGTACW	1 cut(s)	826
TauI	GCSGC	1 cut(s)	617
Tru1I	TTAA	2 cut(s)	606, 719
Tru9I	TTAA	2 cut(s)	606, 719
TscAI	CASTG	3 cut(s)	94, 364, 913
TseFI	GTSAC	2 cut(s)	339, 758
TseI	GCWGC	2 cut(s)	146, 167
Tsp45I	GTSAC	2 cut(s)	339, 758
TspDTI	ATGAA	1 cut(s)	327
TspRI	CASTG	3 cut(s)	94, 364, 913
VpaK11BI	GGWCC	1 cut(s)	771
VspI	ATTAAT	1 cut(s)	719
XapI	RAATTY	1 cut(s)	753
XcmI	CCANNNNNNNNNTGG	1 cut(s)	828
XspI	CTAG	1 cut(s)	611
ZrmI	AGTACT	1 cut(s)	828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.