Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000939.1

Orthogroup ID

OG0004569

Physical Location & Seq

Genomic Coordinates Forward (+)

52987 .. 54026

Gene Structure 1040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000939.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

atgggtaatggtagggaaaagtataactttcagtgtacaagatcaggccattgttattttaacaggtattcagacatcaatcagactgcaggtgctattggaggtgctgcttcttctattgtacgagtgccaacagaggttgtcaagcaaaggatgcaaactgcgcaatttgcttctgccccagatgctgttcgccttattcttgctaaagagggtttcaaaggtctttatgcggggtacggatcattcctattgcgagatttaccatttgatgcagttcagttttgcatctatgagcaacttcacatagggtttaaactagcagcacgaagagatctgaacgaccctgaggttgctatgattggtgcttttgctggtaacttttacattccaactaacttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0008150 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

134

Amino Acids

14.84

Weight (kDa)

8.84

Isoelectric Point (pI)

26.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34065 AT1G34065
fragaria_vesca	FvH4_2g12990 FvH4_2g12990 FvH4_2g12990 FvH4_2g12990
malus_domestica	MD05G1033900.v1.1
prunus_persica	Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1
pyrus_communis	pycom05g02450
rosa_chinensis	RchiOBHm_Chr6g0274151
rosa_laevigata	RLG00000013576
rosa_multiflora	Rmu_sc0000939.1_g000009 Rmu_sc0001939.1_g000020 Rmu_sc0002577.1_g000002
rosa_roxburghii	Rroxscaffold_7G00194510
rosa_rugosa	Rorug06G0079400 Rorug06G0079500
rosa_samantha	Rh4CG128700 Rh6AG194700 Rh6CG199100 Rh6CG438900 Rh6DG190600
rosa_wichuraiana	Rw0G007910 Rw5G039420 Rw6G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	80
Acc16I	TGCGCA	1 cut(s)	165
Acc36I	ACCTGC	1 cut(s)	80
AciI	CCGC	1 cut(s)	233
AclWI	GGATC	1 cut(s)	250
AfaI	GTAC	3 cut(s)	37, 123, 239
AgsI	TTSAA	1 cut(s)	220
AlwI	GGATC	1 cut(s)	250
AlwNI	CAGNNNCTG	1 cut(s)	188
AoxI	GGCC	1 cut(s)	46
ApeKI	GCWGC	2 cut(s)	107, 323
AspLEI	GCGC	1 cut(s)	166
AxyI	CCTNAGG	1 cut(s)	348
BbvI	GCAGC	2 cut(s)	94, 335
BfaI	CTAG	1 cut(s)	320
BfmI	CTRYAG	1 cut(s)	87
BfuAI	ACCTGC	1 cut(s)	80
BglII	AGATCT	1 cut(s)	334
BisI	GCNGC	2 cut(s)	108, 324
BlsI	GCNGC	2 cut(s)	109, 325
BmsI	GCATC	4 cut(s)	144, 175, 262, 297
Bse21I	CCTNAGG	1 cut(s)	348
BseGI	GGATG	1 cut(s)	159
BseMII	CTCAG	1 cut(s)	339
BseXI	GCAGC	2 cut(s)	94, 335
BshFI	GGCC	1 cut(s)	48
BsnI	GGCC	1 cut(s)	48
Bsp1407I	TGTACA	1 cut(s)	35
Bsp143I	GATC	3 cut(s)	41, 242, 334
BspACI	CCGC	1 cut(s)	233
BspANI	GGCC	1 cut(s)	48
BspCNI	CTCAG	1 cut(s)	340
BspMAI	CTGCAG	1 cut(s)	91
BspMI	ACCTGC	1 cut(s)	80
BspPI	GGATC	1 cut(s)	250
BsrGI	TGTACA	1 cut(s)	35
BssMI	GATC	3 cut(s)	41, 242, 334
Bst6I	CTCTTC	1 cut(s)	325
BstAPI	GCANNNNNTGC	1 cut(s)	154
BstAUI	TGTACA	1 cut(s)	35
BstDEI	CTNAG	1 cut(s)	348
BstF5I	GGATG	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	166
BstKTI	GATC	3 cut(s)	44, 245, 337
BstMBI	GATC	3 cut(s)	41, 242, 334
BstMWI	GCNNNNNNNGC	4 cut(s)	154, 163, 170, 185
BstSFI	CTRYAG	1 cut(s)	87
BstV1I	GCAGC	2 cut(s)	94, 335
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
Bsu36I	CCTNAGG	1 cut(s)	348
BsuRI	GGCC	1 cut(s)	48
BtsCI	GGATG	1 cut(s)	159
BtsIMutI	CAGTG	1 cut(s)	38
BveI	ACCTGC	1 cut(s)	80
CaiI	CAGNNNCTG	1 cut(s)	188
CfoI	GCGC	1 cut(s)	166
Csp6I	GTAC	3 cut(s)	36, 122, 238
CviJI	RGCY	1 cut(s)	48
CviKI_1	RGCY	1 cut(s)	48
CviQI	GTAC	3 cut(s)	36, 122, 238
DdeI	CTNAG	1 cut(s)	348
DpnI	GATC	3 cut(s)	43, 244, 336
DpnII	GATC	3 cut(s)	41, 242, 334
DraI	TTTAAA	1 cut(s)	316
Eam1104I	CTCTTC	1 cut(s)	325
EarI	CTCTTC	1 cut(s)	325
Eco81I	CCTNAGG	1 cut(s)	348
FaiI	YATR	5 cut(s)	24, 231, 294, 308, 359
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FauI	CCCGC	1 cut(s)	226
Fnu4HI	GCNGC	2 cut(s)	108, 324
FokI	GGATG	1 cut(s)	166
Fsp4HI	GCNGC	2 cut(s)	108, 324
FspBI	CTAG	1 cut(s)	320
FspI	TGCGCA	1 cut(s)	165
GlaI	GCGC	1 cut(s)	165
GluI	GCNGC	2 cut(s)	108, 324
HaeIII	GGCC	1 cut(s)	48
HhaI	GCGC	1 cut(s)	166
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
Hpy166II	GTNNAC	1 cut(s)	36
Hpy188I	TCNGA	3 cut(s)	73, 84, 339
Hpy8I	GTNNAC	1 cut(s)	36
HpyCH4V	TGCA	4 cut(s)	89, 157, 275, 288
HpyF10VI	GCNNNNNNNGC	4 cut(s)	154, 163, 170, 185
HpyF3I	CTNAG	1 cut(s)	348
HspAI	GCGC	1 cut(s)	164
Kzo9I	GATC	3 cut(s)	41, 242, 334
LpnPI	CCDG	6 cut(s)	30, 49, 75, 195, 360, 360
Lsp1109I	GCAGC	2 cut(s)	94, 335
LweI	GCATC	4 cut(s)	144, 175, 262, 297
MaeI	CTAG	1 cut(s)	320
MaeIII	GTNAC	1 cut(s)	377
MalI	GATC	3 cut(s)	43, 244, 336
MboI	GATC	3 cut(s)	41, 242, 334
MboII	GAAGA	2 cut(s)	105, 342
MflI	RGATCY	1 cut(s)	334
MluCI	AATT	1 cut(s)	167
MnlI	CCTC	4 cut(s)	95, 130, 205, 343
MseI	TTAA	2 cut(s)	60, 315
MssI	GTTTAAAC	1 cut(s)	316
MwoI	GCNNNNNNNGC	4 cut(s)	154, 163, 170, 185
NdeII	GATC	3 cut(s)	41, 242, 334
NsbI	TGCGCA	1 cut(s)	165
PaqCI	CACCTGC	1 cut(s)	80
PkrI	GCNGC	2 cut(s)	109, 325
PmeI	GTTTAAAC	1 cut(s)	316
PstI	CTGCAG	1 cut(s)	91
PstNI	CAGNNNCTG	1 cut(s)	188
PsuI	RGATCY	1 cut(s)	334
RsaI	GTAC	3 cut(s)	37, 123, 239
RsaNI	GTAC	3 cut(s)	36, 122, 238
SaqAI	TTAA	2 cut(s)	60, 315
SatI	GCNGC	2 cut(s)	108, 324
Sau3AI	GATC	3 cut(s)	41, 242, 334
SetI	ASST	6 cut(s)	68, 94, 106, 141, 226, 354
SfaNI	GCATC	4 cut(s)	144, 175, 262, 297
SfcI	CTRYAG	1 cut(s)	87
Sse9I	AATT	1 cut(s)	167
SsiI	CCGC	1 cut(s)	233
SspMI	CTAG	1 cut(s)	320
TasI	AATT	1 cut(s)	167
TatI	WGTACW	1 cut(s)	35
Tru1I	TTAA	2 cut(s)	60, 315
Tru9I	TTAA	2 cut(s)	60, 315
TscAI	CASTG	1 cut(s)	38
TseI	GCWGC	2 cut(s)	107, 323
TspGWI	ACGGA	1 cut(s)	255
TspRI	CASTG	1 cut(s)	38
XspI	CTAG	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.