Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004569

Physical Location & Seq

Genomic Coordinates Forward (+)

61849207 .. 61856696

Gene Structure 7490 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG438900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGTTGGTGCTGACGCTAAACGAAGAGATGCGTCAAGGTTCTGATGATGATCGAAGAAAGATGGGCGCAGCTTTGCTTGGTTTGGCGAAAGCTAGTGATCTGGCGGTCAGTGGTGCATCATTGTGCTTGGTGCAAGAGTTGGCGTCGCTGGCGCTTGCTAGGCGGAGGGCTTCTGCTATATTTGTTGGTGTATATGAACCTACGAAGCAGAAATTGCTGAAGTCACTCCCAGAAAATCTCAGTGCTTTAGCTCATTTGACTGCAGGTGCTATTGGAGGTGCTGCTTCTTCTATTGTACGAGTGCCAACAGAGGTTGTAAAGCAAAGGATGCAAACTGCGCAATTTGCTTCTGCCCCAGATGCTGTTCGCCTTATTCTTGCTAAAGAGGGTTTCAAAGGTCTTTATGCGGGGTACGGATCATTCCTATTGCGAGATTTACCATTTGATGCAGTTCAGTTTTGCATTTATGAGCAACTTCACATAGGGTTTATGAACTATATTGCCTTGATCTTCTCATCTCATCTTGATTGCTTCAAGGAATTTAGGATTGCCAATGTTAGACTGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0008150 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

189

Amino Acids

20.56

Weight (kDa)

9.05

Isoelectric Point (pI)

35.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	79 - 164	2.8e-19	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34065 AT1G34065
fragaria_vesca	FvH4_2g12990 FvH4_2g12990 FvH4_2g12990 FvH4_2g12990
malus_domestica	MD05G1033900.v1.1
prunus_persica	Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1
pyrus_communis	pycom05g02450
rosa_chinensis	RchiOBHm_Chr6g0274151
rosa_laevigata	RLG00000013576
rosa_multiflora	Rmu_sc0000939.1_g000009 Rmu_sc0001939.1_g000020 Rmu_sc0002577.1_g000002
rosa_roxburghii	Rroxscaffold_7G00194510
rosa_rugosa	Rorug06G0079400 Rorug06G0079500
rosa_samantha	Rh4CG128700 Rh6AG194700 Rh6CG199100 Rh6CG438900 Rh6DG190600
rosa_wichuraiana	Rw0G007910 Rw5G039420 Rw6G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	254
Acc16I	TGCGCA	1 cut(s)	339
Acc36I	ACCTGC	1 cut(s)	254
AciI	CCGC	3 cut(s)	104, 163, 407
AclWI	GGATC	1 cut(s)	424
AcsI	RAATTY	1 cut(s)	539
AcuI	CTGAAG	1 cut(s)	239
AcyI	GRCGYC	1 cut(s)	143
AfaI	GTAC	2 cut(s)	297, 413
AgsI	TTSAA	2 cut(s)	394, 535
AluBI	AGCT	3 cut(s)	71, 92, 251
AluI	AGCT	3 cut(s)	71, 92, 251
AlwI	GGATC	1 cut(s)	424
AlwNI	CAGNNNCTG	1 cut(s)	362
ApeKI	GCWGC	2 cut(s)	68, 281
ApoI	RAATTY	1 cut(s)	539
AspLEI	GCGC	3 cut(s)	68, 154, 340
BbvI	GCAGC	2 cut(s)	80, 268
BccI	CCATC	1 cut(s)	55
BfaI	CTAG	2 cut(s)	93, 159
BfmI	CTRYAG	1 cut(s)	261
BfoI	RGCGCY	1 cut(s)	155
BfuAI	ACCTGC	1 cut(s)	254
BisI	GCNGC	2 cut(s)	69, 282
BlsI	GCNGC	2 cut(s)	70, 283
BmsI	GCATC	5 cut(s)	18, 125, 318, 349, 436
BsaBI	GATNNNNATC	1 cut(s)	48
BsaHI	GRCGYC	1 cut(s)	143
Bse8I	GATNNNNATC	1 cut(s)	48
BseGI	GGATG	1 cut(s)	333
BseJI	GATNNNNATC	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	253
BseXI	GCAGC	2 cut(s)	80, 268
Bsp143I	GATC	5 cut(s)	49, 97, 416, 507, 564
BspACI	CCGC	3 cut(s)	104, 163, 407
BspCNI	CTCAG	1 cut(s)	252
BspMAI	CTGCAG	1 cut(s)	265
BspMI	ACCTGC	1 cut(s)	254
BspPI	GGATC	1 cut(s)	424
BssMI	GATC	5 cut(s)	49, 97, 416, 507, 564
BssNI	GRCGYC	1 cut(s)	143
Bst6I	CTCTTC	1 cut(s)	18
BstACI	GRCGYC	1 cut(s)	143
BstAPI	GCANNNNNTGC	2 cut(s)	214, 328
BstC8I	GCNNGC	2 cut(s)	150, 156
BstDEI	CTNAG	1 cut(s)	239
BstF5I	GGATG	1 cut(s)	333
BstH2I	RGCGCY	1 cut(s)	155
BstHHI	GCGC	3 cut(s)	68, 154, 340
BstKTI	GATC	5 cut(s)	52, 100, 419, 510, 567
BstMBI	GATC	5 cut(s)	49, 97, 416, 507, 564
BstMWI	GCNNNNNNNGC	7 cut(s)	149, 160, 214, 328, 337, 344, 359
BstSFI	CTRYAG	1 cut(s)	261
BstV1I	GCAGC	2 cut(s)	80, 268
BtsCI	GGATG	1 cut(s)	333
BtsIMutI	CAGTG	2 cut(s)	115, 247
BveI	ACCTGC	1 cut(s)	254
Cac8I	GCNNGC	2 cut(s)	150, 156
CaiI	CAGNNNCTG	1 cut(s)	362
CfoI	GCGC	3 cut(s)	68, 154, 340
CseI	GACGC	3 cut(s)	20, 22, 132
Csp6I	GTAC	2 cut(s)	296, 412
CviJI	RGCY	4 cut(s)	71, 92, 170, 251
CviKI_1	RGCY	4 cut(s)	71, 92, 170, 251
CviQI	GTAC	2 cut(s)	296, 412
DdeI	CTNAG	1 cut(s)	239
DpnI	GATC	5 cut(s)	51, 99, 418, 509, 566
DpnII	GATC	5 cut(s)	49, 97, 416, 507, 564
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
EciI	GGCGGA	1 cut(s)	178
Eco57I	CTGAAG	1 cut(s)	239
FaiI	YATR	8 cut(s)	179, 193, 195, 405, 468, 482, 491, 498
FauI	CCCGC	1 cut(s)	400
Fnu4HI	GCNGC	2 cut(s)	69, 282
FokI	GGATG	1 cut(s)	340
Fsp4HI	GCNGC	2 cut(s)	69, 282
FspBI	CTAG	2 cut(s)	93, 159
FspI	TGCGCA	1 cut(s)	339
GlaI	GCGC	3 cut(s)	67, 153, 339
GluI	GCNGC	2 cut(s)	69, 282
HaeII	RGCGCY	1 cut(s)	155
HgaI	GACGC	3 cut(s)	20, 22, 132
HhaI	GCGC	3 cut(s)	68, 154, 340
Hin1I	GRCGYC	1 cut(s)	143
Hin6I	GCGC	3 cut(s)	66, 152, 338
HinP1I	GCGC	3 cut(s)	66, 152, 338
Hpy188I	TCNGA	2 cut(s)	43, 569
Hpy188III	TCNNGA	1 cut(s)	524
Hpy99I	CGWCG	1 cut(s)	148
HpyCH4V	TGCA	6 cut(s)	116, 133, 263, 331, 449, 462
HpyF10VI	GCNNNNNNNGC	7 cut(s)	149, 160, 214, 328, 337, 344, 359
HpyF3I	CTNAG	1 cut(s)	239
Hsp92I	GRCGYC	1 cut(s)	143
HspAI	GCGC	3 cut(s)	66, 152, 338
Kzo9I	GATC	5 cut(s)	49, 97, 416, 507, 564
LpnPI	CCDG	5 cut(s)	86, 134, 243, 249, 369
Lsp1109I	GCAGC	2 cut(s)	80, 268
LweI	GCATC	5 cut(s)	18, 125, 318, 349, 436
MaeI	CTAG	2 cut(s)	93, 159
MaeIII	GTNAC	1 cut(s)	222
MalI	GATC	5 cut(s)	51, 99, 418, 509, 566
MboI	GATC	5 cut(s)	49, 97, 416, 507, 564
MboII	GAAGA	4 cut(s)	35, 66, 279, 502
MluCI	AATT	3 cut(s)	212, 341, 539
MnlI	CCTC	4 cut(s)	159, 269, 304, 379
MslI	CAYNNNNRTG	1 cut(s)	121
MwoI	GCNNNNNNNGC	7 cut(s)	149, 160, 214, 328, 337, 344, 359
NdeII	GATC	5 cut(s)	49, 97, 416, 507, 564
NmuCI	GTSAC	1 cut(s)	222
NsbI	TGCGCA	1 cut(s)	339
PaqCI	CACCTGC	1 cut(s)	254
PkrI	GCNGC	2 cut(s)	70, 283
PstI	CTGCAG	1 cut(s)	265
PstNI	CAGNNNCTG	1 cut(s)	362
RsaI	GTAC	2 cut(s)	297, 413
RsaNI	GTAC	2 cut(s)	296, 412
RseI	CAYNNNNRTG	1 cut(s)	121
SatI	GCNGC	2 cut(s)	69, 282
Sau3AI	GATC	5 cut(s)	49, 97, 416, 507, 564
SetI	ASST	9 cut(s)	40, 73, 94, 202, 253, 268, 280, 315, 400
SfaNI	GCATC	5 cut(s)	18, 125, 318, 349, 436
SfcI	CTRYAG	1 cut(s)	261
SmiMI	CAYNNNNRTG	1 cut(s)	121
Sse9I	AATT	3 cut(s)	212, 341, 539
SsiI	CCGC	3 cut(s)	104, 163, 407
SspMI	CTAG	2 cut(s)	93, 159
TaqI	TCGA	1 cut(s)	52
TasI	AATT	3 cut(s)	212, 341, 539
TscAI	CASTG	2 cut(s)	115, 247
TseFI	GTSAC	1 cut(s)	222
TseI	GCWGC	2 cut(s)	68, 281
Tsp45I	GTSAC	1 cut(s)	222
TspDTI	ATGAA	2 cut(s)	210, 506
TspGWI	ACGGA	1 cut(s)	429
TspRI	CASTG	2 cut(s)	115, 247
XapI	RAATTY	1 cut(s)	539
XspI	CTAG	2 cut(s)	93, 159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.