Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004569

Physical Location & Seq

Genomic Coordinates Reverse (-)

10632654 .. 10634002

Gene Structure 1349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0079500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGAAGGTGCTGCAGCCAAGCCTTCGAGAGTCATTGAACTCAATGCATATAGCAAGGATCATTTCAGCGTATGCTGAGCCTTTGCACTTATGGGACTCCAGGTCGCAGGCAGACTTCACTACTAATTTCTCATTTGTTGTTGACACTCTTAACGATTCCCGCTCTGGTGATGGATTTGCCTTTTTTCTTACTCCTGTTCACTTTCCCATTCCACCTAACTCAGCTGGTGCTCATCTAGGAATGTTCAACACCTCCACACGTTTTGAACCGTTAATGAATCAAATTGTAATGGTTGAGTTCGACACCAGGTCCGATAAATGGGTTGATCCACAAGGACAACACGTTGGGATCGATGTCAACACCCTCCGCTCAGTCGTTAATGCCAATTGGAATGCAAGCAGCAACAGTGGGAAGAAGGGTTATGTACGGATAAGTTACAATTCTACTACCCAAAACTTCAGTGTGTATTGGACATACAATGAAAGTCAAAATAACCCTGTTTTTGCTTGGAACTCTTCTCTTTCTTATCCTATTGACCTTAGAAAGGTGCTTCCTGAGTGGGTCACAATTGGTTTTTTAGCTTCTACAGGATTCGGCCTTGAGCGCCACGCTATAAAATCATGGGAATTCAGTTCAAATTTGGATTTTGATGAAAGGATTGTTAAATGGAAGAAGACAACCTTGATTGTGGTTGTTGTAGTTTCCTTCTCCGTTCTGATGATTTTTGTGCCCATGTGCTGGTTTCTAGTAAGAAAGAGAATGAAAAGGATTCGTGGAAATAATTACTTCAATGATGGGCAAAAATCTATGAATACATATCTTGAGAGACTAGCCTTGCCAAGACAATTTACTTACCAAGAATTATTTGCGGCCACTAATGGCTTTGCAAATGATACAAGGCTAGGCCATGAAGGATCTGGACAATTCAATGGATGGTGTCATGAGCAAGGTGAATGCTTACTTGTTTATGCATACATGCCGAATAGCAGCCTTGATGAGCATCTATTTGGTTGTAGAACAAGCCTATTATGGGATTTTAGGTACAAGATAGCCTTGGGCTTGGCCTCGGCCCTTCATTATCTACATGAAGATGTAGAGCAGTGTCTGCTTCACAGGGATATTAAATCAGCTAACGTGCTATTGGACAATGATTTCAATACTAAGCTTGGCGATTTTGGCATTGCTAAGCTCGTGGATACTCGGTTTAGGACTCAAACAACAGGGGTGGTAGGGACTTTTGGATACATGGCACCAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0008150 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

419

Amino Acids

47.83

Weight (kDa)

6.87

Isoelectric Point (pI)

31.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	23 - 218	1.3e-53	Legume lectin domain
Pkinase	PF00069	308 - 419	8.1e-19	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	308 - 419	3.2e-16	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34065 AT1G34065
fragaria_vesca	FvH4_2g12990 FvH4_2g12990 FvH4_2g12990 FvH4_2g12990
malus_domestica	MD05G1033900.v1.1
prunus_persica	Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1
pyrus_communis	pycom05g02450
rosa_chinensis	RchiOBHm_Chr6g0274151
rosa_laevigata	RLG00000013576
rosa_multiflora	Rmu_sc0000939.1_g000009 Rmu_sc0001939.1_g000020 Rmu_sc0002577.1_g000002
rosa_roxburghii	Rroxscaffold_7G00194510
rosa_rugosa	Rorug06G0079400 Rorug06G0079500
rosa_samantha	Rh4CG128700 Rh6AG194700 Rh6CG199100 Rh6CG438900 Rh6DG190600
rosa_wichuraiana	Rw0G007910 Rw5G039420 Rw6G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1249
AccB7I	CCANNNNNTGG	1 cut(s)	738
AccBSI	CCGCTC	2 cut(s)	162, 369
AciI	CCGC	3 cut(s)	160, 367, 869
AclWI	GGATC	4 cut(s)	65, 320, 356, 922
AcoI	YGGCCR	1 cut(s)	870
AcsI	RAATTY	2 cut(s)	626, 637
AcuI	CTGAAG	1 cut(s)	442
AfaI	GTAC	2 cut(s)	426, 1043
AfiI	CCNNNNNNNGG	4 cut(s)	318, 544, 738, 1030
AflIII	ACRYGT	2 cut(s)	257, 340
AgsI	TTSAA	7 cut(s)	37, 247, 266, 636, 790, 928, 1156
AhdI	GACNNNNNGTC	2 cut(s)	100, 307
AjnI	CCWGG	2 cut(s)	98, 305
AluBI	AGCT	5 cut(s)	224, 581, 1130, 1165, 1189
AluI	AGCT	5 cut(s)	224, 581, 1130, 1165, 1189
Alw21I	GWGCWC	1 cut(s)	232
Alw26I	GTCTC	1 cut(s)	820
AlwI	GGATC	4 cut(s)	65, 320, 356, 922
AlwNI	CAGNNNCTG	1 cut(s)	1105
AoxI	GGCC	5 cut(s)	595, 870, 904, 1062, 1068
ApeKI	GCWGC	4 cut(s)	10, 13, 399, 987
ApoI	RAATTY	2 cut(s)	626, 637
AspLEI	GCGC	1 cut(s)	606
AspS9I	GGNCC	2 cut(s)	309, 1069
AsuHPI	GGTGA	2 cut(s)	179, 962
AvaII	GGWCC	1 cut(s)	309
BaeGI	GKGCMC	1 cut(s)	732
BanI	GGYRCC	1 cut(s)	1249
BauI	CACGAG	1 cut(s)	1190
BbsI	GAAGAC	1 cut(s)	680
Bbv12I	GWGCWC	1 cut(s)	232
BbvI	GCAGC	3 cut(s)	25, 411, 999
BccI	CCATC	3 cut(s)	164, 788, 927
BciT130I	CCWGG	2 cut(s)	100, 307
BciVI	GTATCC	2 cut(s)	1189, 1235
BcoDI	GTCTC	1 cut(s)	820
BfaI	CTAG	4 cut(s)	236, 746, 830, 902
BfmI	CTRYAG	2 cut(s)	11, 585
BfoI	RGCGCY	1 cut(s)	607
BfuI	GTATCC	2 cut(s)	1189, 1235
BisI	GCNGC	5 cut(s)	11, 14, 400, 870, 988
BlpI	GCTNAGC	2 cut(s)	75, 1185
BlsI	GCNGC	5 cut(s)	12, 15, 401, 871, 989
Bme1390I	CCNGG	2 cut(s)	100, 307
Bme18I	GGWCC	1 cut(s)	309
BmeRI	GACNNNNNGTC	2 cut(s)	100, 307
BmgT120I	GGNCC	2 cut(s)	309, 1069
BmiI	GGNNCC	1 cut(s)	1251
BmrFI	CCNGG	2 cut(s)	100, 307
BmsI	GCATC	1 cut(s)	1009
BpiI	GAAGAC	1 cut(s)	680
BpmI	CTGGAG	1 cut(s)	82
Bpu1102I	GCTNAGC	2 cut(s)	75, 1185
BpuEI	CTTGAG	2 cut(s)	620, 842
Bsa29I	ATCGAT	1 cut(s)	351
BsaBI	GATNNNNATC	1 cut(s)	999
BsaJI	CCNNGG	2 cut(s)	1053, 1065
Bsc4I	CCNNNNNNNGG	4 cut(s)	318, 544, 738, 1030
Bse3DI	GCAATG	1 cut(s)	1179
Bse8I	GATNNNNATC	1 cut(s)	999
BseBI	CCWGG	2 cut(s)	100, 307
BseCI	ATCGAT	1 cut(s)	351
BseDI	CCNNGG	2 cut(s)	1053, 1065
BseGI	GGATG	1 cut(s)	938
BseJI	GATNNNNATC	1 cut(s)	999
BseLI	CCNNNNNNNGG	4 cut(s)	318, 544, 738, 1030
BseMI	GCAATG	1 cut(s)	1179
BseMII	CTCAG	4 cut(s)	66, 234, 384, 546
BseSI	GKGCMC	1 cut(s)	732
BseXI	GCAGC	3 cut(s)	25, 411, 999
BshFI	GGCC	5 cut(s)	597, 872, 906, 1064, 1070
BshNI	GGYRCC	1 cut(s)	1249
BshVI	ATCGAT	1 cut(s)	351
BsiHKAI	GWGCWC	1 cut(s)	232
BslFI	GGGAC	2 cut(s)	107, 1246
BslI	CCNNNNNNNGG	4 cut(s)	318, 544, 738, 1030
BsmAI	GTCTC	1 cut(s)	820
BsmFI	GGGAC	2 cut(s)	107, 1246
BsmI	GAATGC	2 cut(s)	397, 959
BsnI	GGCC	5 cut(s)	597, 872, 906, 1064, 1070
Bsp1286I	GDGCHC	2 cut(s)	232, 732
Bsp143I	GATC	4 cut(s)	57, 325, 348, 914
Bsp1720I	GCTNAGC	2 cut(s)	75, 1185
BspACI	CCGC	3 cut(s)	160, 367, 869
BspANI	GGCC	5 cut(s)	597, 872, 906, 1064, 1070
BspCNI	CTCAG	4 cut(s)	67, 233, 383, 547
BspDI	ATCGAT	1 cut(s)	351
BspHI	TCATGA	1 cut(s)	940
BspLI	GGNNCC	1 cut(s)	1251
BspMAI	CTGCAG	1 cut(s)	15
BspPI	GGATC	4 cut(s)	65, 320, 356, 922
BspT107I	GGYRCC	1 cut(s)	1249
BsrBI	CCGCTC	2 cut(s)	162, 369
BsrDI	GCAATG	1 cut(s)	1179
BssECI	CCNNGG	2 cut(s)	1053, 1065
BssMI	GATC	4 cut(s)	57, 325, 348, 914
BssSI	CACGAG	1 cut(s)	1190
BssT1I	CCWWGG	1 cut(s)	1053
Bst2BI	CACGAG	1 cut(s)	1190
Bst2UI	CCWGG	2 cut(s)	100, 307
Bst4CI	ACNGT	2 cut(s)	270, 407
Bst6I	CTCTTC	1 cut(s)	520
BstAPI	GCANNNNNTGC	1 cut(s)	1105
BstC8I	GCNNGC	2 cut(s)	108, 397
BstDEI	CTNAG	7 cut(s)	75, 220, 370, 539, 555, 1161, 1185
BstENI	CCTNNNNNAGG	1 cut(s)	542
BstF5I	GGATG	1 cut(s)	938
BstH2I	RGCGCY	1 cut(s)	607
BstHHI	GCGC	1 cut(s)	606
BstKTI	GATC	4 cut(s)	60, 328, 351, 917
BstMAI	GTCTC	1 cut(s)	820
BstMBI	GATC	4 cut(s)	57, 325, 348, 914
BstMWI	GCNNNNNNNGC	3 cut(s)	603, 1105, 1176
BstNI	CCWGG	2 cut(s)	100, 307
BstNSI	RCATGY	1 cut(s)	979
BstSCI	CCNGG	2 cut(s)	98, 305
BstSFI	CTRYAG	2 cut(s)	11, 585
BstSLI	GKGCMC	1 cut(s)	732
BstV1I	GCAGC	3 cut(s)	25, 411, 999
BstV2I	GAAGAC	1 cut(s)	680
BstX2I	RGATCY	1 cut(s)	914
BstYI	RGATCY	1 cut(s)	914
Bsu15I	ATCGAT	1 cut(s)	351
BsuI	GTATCC	2 cut(s)	1189, 1235
BsuRI	GGCC	5 cut(s)	597, 872, 906, 1064, 1070
BsuTUI	ATCGAT	1 cut(s)	351
BtsCI	GGATG	1 cut(s)	938
BtsI	GCAGTG	1 cut(s)	1106
BtsIMutI	CAGTG	3 cut(s)	412, 466, 1106
Cac8I	GCNNGC	2 cut(s)	108, 397
CaiI	CAGNNNCTG	1 cut(s)	1105
CciI	TCATGA	1 cut(s)	940
CfoI	GCGC	1 cut(s)	606
Cfr13I	GGNCC	2 cut(s)	309, 1069
ClaI	ATCGAT	1 cut(s)	351
CsiI	ACCWGGT	1 cut(s)	305
Csp6I	GTAC	2 cut(s)	425, 1042
CspCI	CAANNNNNGTGG	4 cut(s)	244, 279, 1206, 1241
CviAII	CATG	7 cut(s)	621, 733, 908, 941, 976, 1085, 1246
CviQI	GTAC	2 cut(s)	425, 1042
DdeI	CTNAG	7 cut(s)	75, 220, 370, 539, 555, 1161, 1185
DpnI	GATC	4 cut(s)	59, 327, 350, 916
DpnII	GATC	4 cut(s)	57, 325, 348, 914
DriI	GACNNNNNGTC	2 cut(s)	100, 307
EaeI	YGGCCR	1 cut(s)	870
Eam1104I	CTCTTC	1 cut(s)	520
Eam1105I	GACNNNNNGTC	2 cut(s)	100, 307
EarI	CTCTTC	1 cut(s)	520
Eco130I	CCWWGG	1 cut(s)	1053
Eco47I	GGWCC	1 cut(s)	309
Eco57I	CTGAAG	1 cut(s)	442
EcoNI	CCTNNNNNAGG	1 cut(s)	542
EcoRI	GAATTC	1 cut(s)	626
EcoRII	CCWGG	2 cut(s)	98, 305
EcoT14I	CCWWGG	1 cut(s)	1053
EcoT22I	ATGCAT	2 cut(s)	48, 973
ErhI	CCWWGG	1 cut(s)	1053
FaeI	CATG	7 cut(s)	624, 736, 911, 944, 979, 1088, 1249
FalI	AAGNNNNNCTT	4 cut(s)	665, 697, 1037, 1069
FaqI	GGGAC	2 cut(s)	107, 1246
FatI	CATG	7 cut(s)	620, 732, 907, 940, 975, 1084, 1245
FauI	CCCGC	1 cut(s)	167
Fnu4HI	GCNGC	5 cut(s)	11, 14, 400, 870, 988
FokI	GGATG	1 cut(s)	945
Fsp4HI	GCNGC	5 cut(s)	11, 14, 400, 870, 988
FspBI	CTAG	4 cut(s)	236, 746, 830, 902
GlaI	GCGC	1 cut(s)	605
GluI	GCNGC	5 cut(s)	11, 14, 400, 870, 988
GsuI	CTGGAG	1 cut(s)	82
HaeII	RGCGCY	1 cut(s)	607
HaeIII	GGCC	5 cut(s)	597, 872, 906, 1064, 1070
HhaI	GCGC	1 cut(s)	606
Hin1II	CATG	7 cut(s)	624, 736, 911, 944, 979, 1088, 1249
Hin6I	GCGC	1 cut(s)	604
HinP1I	GCGC	1 cut(s)	604
HincII	GTYRAC	2 cut(s)	142, 358
HindII	GTYRAC	2 cut(s)	142, 358
HindIII	AAGCTT	1 cut(s)	1163
HinfI	GANTC	7 cut(s)	29, 95, 155, 277, 591, 769, 1210
HphI	GGTGA	2 cut(s)	179, 962
Hpy166II	GTNNAC	3 cut(s)	142, 199, 358
Hpy188I	TCNGA	2 cut(s)	313, 717
Hpy188III	TCNNGA	5 cut(s)	26, 554, 821, 918, 941
Hpy8I	GTNNAC	3 cut(s)	142, 199, 358
HpyAV	CCTTC	5 cut(s)	32, 409, 715, 905, 1082
HpyCH4III	ACNGT	2 cut(s)	270, 407
HpyCH4IV	ACGT	3 cut(s)	259, 342, 1134
HpyCH4V	TGCA	6 cut(s)	13, 46, 85, 395, 887, 971
HpyF10VI	GCNNNNNNNGC	3 cut(s)	603, 1105, 1176
HpyF3I	CTNAG	7 cut(s)	75, 220, 370, 539, 555, 1161, 1185
HpySE526I	ACGT	3 cut(s)	259, 342, 1134
Hsp92II	CATG	7 cut(s)	624, 736, 911, 944, 979, 1088, 1249
HspAI	GCGC	1 cut(s)	604
Kzo9I	GATC	4 cut(s)	57, 325, 348, 914
Lsp1109I	GCAGC	3 cut(s)	25, 411, 999
LweI	GCATC	1 cut(s)	1009
MabI	ACCWGGT	1 cut(s)	305
MaeI	CTAG	4 cut(s)	236, 746, 830, 902
MaeII	ACGT	3 cut(s)	259, 342, 1134
MaeIII	GTNAC	2 cut(s)	434, 562
MalI	GATC	4 cut(s)	59, 327, 350, 916
MbiI	CCGCTC	2 cut(s)	162, 369
MboI	GATC	4 cut(s)	57, 325, 348, 914
MboII	GAAGA	5 cut(s)	424, 507, 682, 685, 1100
MfeI	CAATTG	2 cut(s)	385, 567
MflI	RGATCY	1 cut(s)	914
MhlI	GDGCHC	2 cut(s)	232, 732
MlyI	GAGTC	3 cut(s)	38, 89, 1204
MnlI	CCTC	3 cut(s)	262, 374, 1075
Mph1103I	ATGCAT	2 cut(s)	48, 973
MseI	TTAA	5 cut(s)	150, 272, 378, 663, 1122
MslI	CAYNNNNRTG	1 cut(s)	1089
MspA1I	CMGCKG	1 cut(s)	224
MspR9I	CCNGG	2 cut(s)	100, 307
MunI	CAATTG	2 cut(s)	385, 567
Mva1269I	GAATGC	2 cut(s)	397, 959
MvaI	CCWGG	2 cut(s)	100, 307
MwoI	GCNNNNNNNGC	3 cut(s)	603, 1105, 1176
NdeII	GATC	4 cut(s)	57, 325, 348, 914
NlaIII	CATG	7 cut(s)	624, 736, 911, 944, 979, 1088, 1249
NlaIV	GGNNCC	1 cut(s)	1251
NmeAIII	GCCGAG	1 cut(s)	1046
NmuCI	GTSAC	1 cut(s)	562
NsiI	ATGCAT	2 cut(s)	48, 973
NspI	RCATGY	1 cut(s)	979
PagI	TCATGA	1 cut(s)	940
PcsI	WCGNNNNNNNCGW	1 cut(s)	348
PctI	GAATGC	2 cut(s)	397, 959
PfeI	GAWTC	4 cut(s)	155, 277, 591, 769
PflMI	CCANNNNNTGG	1 cut(s)	738
PkrI	GCNGC	5 cut(s)	12, 15, 401, 871, 989
PleI	GAGTC	3 cut(s)	37, 89, 1204
PpsI	GAGTC	3 cut(s)	37, 89, 1204
Psp6I	CCWGG	2 cut(s)	98, 305
PspGI	CCWGG	2 cut(s)	98, 305
PspN4I	GGNNCC	1 cut(s)	1251
PspPI	GGNCC	2 cut(s)	309, 1069
PstI	CTGCAG	1 cut(s)	15
PstNI	CAGNNNCTG	1 cut(s)	1105
PsuI	RGATCY	1 cut(s)	914
PvuII	CAGCTG	1 cut(s)	224
RsaI	GTAC	2 cut(s)	426, 1043
RsaNI	GTAC	2 cut(s)	425, 1042
RseI	CAYNNNNRTG	1 cut(s)	1089
SaqAI	TTAA	5 cut(s)	150, 272, 378, 663, 1122
SatI	GCNGC	5 cut(s)	11, 14, 400, 870, 988
Sau3AI	GATC	4 cut(s)	57, 325, 348, 914
Sau96I	GGNCC	2 cut(s)	309, 1069
SchI	GAGTC	3 cut(s)	38, 89, 1204
ScrFI	CCNGG	2 cut(s)	100, 307
SduI	GDGCHC	2 cut(s)	232, 732
SexAI	ACCWGGT	1 cut(s)	305
SfaNI	GCATC	1 cut(s)	1009
SfcI	CTRYAG	2 cut(s)	11, 585
SinI	GGWCC	1 cut(s)	309
SmiMI	CAYNNNNRTG	1 cut(s)	1089
SmlI	CTYRAG	2 cut(s)	599, 821
SmoI	CTYRAG	2 cut(s)	599, 821
SsiI	CCGC	3 cut(s)	160, 367, 869
SspMI	CTAG	4 cut(s)	236, 746, 830, 902
StyD4I	CCNGG	2 cut(s)	98, 305
StyI	CCWWGG	1 cut(s)	1053
TaaI	ACNGT	2 cut(s)	270, 407
TaiI	ACGT	3 cut(s)	262, 345, 1137
TaqI	TCGA	3 cut(s)	25, 300, 351
TauI	GCSGC	1 cut(s)	872
TfiI	GAWTC	4 cut(s)	155, 277, 591, 769
Tru1I	TTAA	5 cut(s)	150, 272, 378, 663, 1122
Tru9I	TTAA	5 cut(s)	150, 272, 378, 663, 1122
TscAI	CASTG	3 cut(s)	412, 466, 1106
TseFI	GTSAC	1 cut(s)	562
TseI	GCWGC	4 cut(s)	10, 13, 399, 987
Tsp45I	GTSAC	1 cut(s)	562
TspDTI	ATGAA	9 cut(s)	17, 290, 495, 666, 776, 824, 924, 1064, 1101
TspGWI	ACGGA	2 cut(s)	442, 700
TspRI	CASTG	3 cut(s)	412, 466, 1106
Van91I	CCANNNNNTGG	1 cut(s)	738
VpaK11BI	GGWCC	1 cut(s)	309
XagI	CCTNNNNNAGG	1 cut(s)	542
XapI	RAATTY	2 cut(s)	626, 637
XceI	RCATGY	1 cut(s)	979
XcmI	CCANNNNNNNNNTGG	1 cut(s)	914
XspI	CTAG	4 cut(s)	236, 746, 830, 902
Zsp2I	ATGCAT	2 cut(s)	48, 973

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.