Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0004569

Physical Location & Seq

Genomic Coordinates Reverse (-)

5429292 .. 5435208

Gene Structure 5917 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1033900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGCAAACCAAAACTTCTCAATCACATTCACCTGCCATCAGCATGGGTAGCTCTGAGAAGGTGCCAAATGGCTGCTTGACAACAGCTAGTGATAGAGATGATACACCTTTCGATCTTTTACGCGATTTTTATGATGGTGTCATAGCTGGCGGTGCTGCTGGTGTTTTTGTAGAAGCAGCTTTATACCCTATTGACACAATAAAAACTCGATTACAGGCATGGCAAATTATGTTGAAGGGTCTGTATTCAGGATTGGCTGGAAACCTTGCTGGTGTCTTGCCGGCTTCTGCCATATTTGTTGGTGTTTATGAACCTACAAAGCAGAAACTTCTGAACGTATTGCCAGAAAACCTTAGTGCTTTAGCTCATTTGACTGCAGGTGCCATTGCAGGTGCTGCTTCTTCTGTTGTACGAGTTCCAACAGAGGTTGTCAAGCAACGGATGCAAACCGCACAGTTTTCCTCAGCCCCAGATGCTGTCCGTCTTATTCTTGCTAAGGAGGGTTTCAAAGGTCTTTATGCGGGGTATGGATCATTCCTACTGCGAGATTTACCATTTGATGCTGTTCAGTTTTGCATCTACGAGCAGCTTCGAATAGGATTTAAACTAGCGGCACGAAGAGATCTGAAAGACCCTGAGGTTGCTTTAATTGGTGCTTTTGCTGGTGCAATAACTGGAGCTATAACTACTCCTCTTGACGTGATAAAAACGAGATTAATGGTTCAGGGATCAGGAAACCAGTACCAAGGAATTTGTGATTGTGTTGGGACCATAATGAGAGAAGAAGGAAGTCATGCTTTTTGGAAGGGTGTTGGACCACGAGTTTTGTGGATAGGTATTGGGGGTTCAATATTTTTCGGTGTTCTTGAAAGGACAAAGCAAATACTTGAGGAAAGGCGCCCCAGGCATCACAAGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0008150 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

307

Amino Acids

32.92

Weight (kDa)

8.99

Isoelectric Point (pI)

32.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	43 - 73	1e-05	Mitochondrial carrier protein
Mito_carr	PF00153	117 - 199	1.2e-19	Mitochondrial carrier protein
Mito_carr	PF00153	214 - 298	6.7e-24	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34065 AT1G34065
fragaria_vesca	FvH4_2g12990 FvH4_2g12990 FvH4_2g12990 FvH4_2g12990
malus_domestica	MD05G1033900.v1.1
prunus_persica	Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1
pyrus_communis	pycom05g02450
rosa_chinensis	RchiOBHm_Chr6g0274151
rosa_laevigata	RLG00000013576
rosa_multiflora	Rmu_sc0000939.1_g000009 Rmu_sc0001939.1_g000020 Rmu_sc0002577.1_g000002
rosa_roxburghii	Rroxscaffold_7G00194510
rosa_rugosa	Rorug06G0079400 Rorug06G0079500
rosa_samantha	Rh4CG128700 Rh6AG194700 Rh6CG199100 Rh6CG438900 Rh6DG190600
rosa_wichuraiana	Rw0G007910 Rw5G039420 Rw6G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	40, 368, 380
Acc36I	ACCTGC	3 cut(s)	40, 368, 380
AccB1I	GGYRCC	3 cut(s)	61, 380, 897
AccII	CGCG	1 cut(s)	123
AciI	CCGC	4 cut(s)	150, 450, 521, 611
AclWI	GGATC	2 cut(s)	538, 736
AcsI	RAATTY	1 cut(s)	750
AcyI	GRCGYC	1 cut(s)	898
AfaI	GTAC	2 cut(s)	411, 743
AgsI	TTSAA	4 cut(s)	235, 508, 849, 869
AjiI	CACGTC	1 cut(s)	700
AjnI	CCWGG	1 cut(s)	902
AluBI	AGCT	7 cut(s)	51, 86, 146, 179, 365, 589, 680
AluI	AGCT	7 cut(s)	51, 86, 146, 179, 365, 589, 680
AlwI	GGATC	2 cut(s)	538, 736
AlwNI	CAGNNNCTG	2 cut(s)	395, 476
ApeKI	GCWGC	5 cut(s)	72, 155, 176, 395, 586
ApoI	RAATTY	1 cut(s)	750
AseI	ATTAAT	1 cut(s)	716
AspLEI	GCGC	1 cut(s)	900
AspS9I	GGNCC	2 cut(s)	768, 815
AsuHPI	GGTGA	1 cut(s)	21
AsuII	TTCGAA	1 cut(s)	592
AvaII	GGWCC	2 cut(s)	768, 815
AxyI	CCTNAGG	1 cut(s)	636
BanI	GGYRCC	3 cut(s)	61, 380, 897
BauI	CACGAG	1 cut(s)	819
BbvCI	CCTCAGC	1 cut(s)	463
BbvI	GCAGC	5 cut(s)	59, 142, 188, 382, 598
BccI	CCATC	2 cut(s)	44, 128
BciT130I	CCWGG	1 cut(s)	904
BfaI	CTAG	2 cut(s)	87, 608
BfmI	CTRYAG	1 cut(s)	375
BfoI	RGCGCY	1 cut(s)	901
BfuAI	ACCTGC	3 cut(s)	40, 368, 380
BglII	AGATCT	1 cut(s)	622
BisI	GCNGC	6 cut(s)	73, 156, 177, 396, 587, 612
BlsI	GCNGC	6 cut(s)	74, 157, 178, 397, 588, 613
Bme1390I	CCNGG	1 cut(s)	904
Bme18I	GGWCC	2 cut(s)	768, 815
BmgBI	CACGTC	1 cut(s)	700
BmgT120I	GGNCC	2 cut(s)	768, 815
BmiI	GGNNCC	4 cut(s)	63, 382, 769, 899
BmrFI	CCNGG	1 cut(s)	904
BmsI	GCATC	5 cut(s)	432, 463, 550, 585, 916
BpmI	CTGGAG	1 cut(s)	696
Bpu10I	CCTNAGC	2 cut(s)	463, 495
Bpu14I	TTCGAA	1 cut(s)	592
BpuEI	CTTGAG	1 cut(s)	908
BsaHI	GRCGYC	1 cut(s)	898
BsaJI	CCNNGG	2 cut(s)	745, 902
Bse118I	RCCGGY	1 cut(s)	280
Bse1I	ACTGG	2 cut(s)	679, 739
Bse21I	CCTNAGG	1 cut(s)	636
Bse3DI	GCAATG	1 cut(s)	384
BseBI	CCWGG	1 cut(s)	904
BseDI	CCNNGG	2 cut(s)	745, 902
BseGI	GGATG	1 cut(s)	447
BseMI	GCAATG	1 cut(s)	384
BseMII	CTCAG	3 cut(s)	45, 477, 627
BseNI	ACTGG	2 cut(s)	679, 739
BseRI	GAGGAG	1 cut(s)	681
BseXI	GCAGC	5 cut(s)	59, 142, 188, 382, 598
Bsh1236I	CGCG	1 cut(s)	123
BshNI	GGYRCC	3 cut(s)	61, 380, 897
BsiSI	CCGG	1 cut(s)	281
BslFI	GGGAC	1 cut(s)	781
BsmFI	GGGAC	1 cut(s)	781
Bsp119I	TTCGAA	1 cut(s)	592
Bsp143I	GATC	4 cut(s)	112, 530, 622, 728
BspACI	CCGC	4 cut(s)	150, 450, 521, 611
BspCNI	CTCAG	3 cut(s)	46, 476, 628
BspFNI	CGCG	1 cut(s)	123
BspLI	GGNNCC	4 cut(s)	63, 382, 769, 899
BspMAI	CTGCAG	1 cut(s)	379
BspMI	ACCTGC	3 cut(s)	40, 368, 380
BspPI	GGATC	2 cut(s)	538, 736
BspT104I	TTCGAA	1 cut(s)	592
BspT107I	GGYRCC	3 cut(s)	61, 380, 897
BsrDI	GCAATG	1 cut(s)	384
BsrFI	RCCGGY	1 cut(s)	280
BsrI	ACTGG	2 cut(s)	679, 739
BssAI	RCCGGY	1 cut(s)	280
BssECI	CCNNGG	2 cut(s)	745, 902
BssMI	GATC	4 cut(s)	112, 530, 622, 728
BssNI	GRCGYC	1 cut(s)	898
BssSI	CACGAG	1 cut(s)	819
BssT1I	CCWWGG	1 cut(s)	745
Bst2BI	CACGAG	1 cut(s)	819
Bst2UI	CCWGG	1 cut(s)	904
Bst4CI	ACNGT	1 cut(s)	456
Bst6I	CTCTTC	1 cut(s)	613
BstACI	GRCGYC	1 cut(s)	898
BstAPI	GCANNNNNTGC	2 cut(s)	395, 442
BstBI	TTCGAA	1 cut(s)	592
BstC8I	GCNNGC	2 cut(s)	148, 282
BstDEI	CTNAG	5 cut(s)	54, 353, 463, 495, 636
BstF5I	GGATG	1 cut(s)	447
BstFNI	CGCG	1 cut(s)	123
BstH2I	RGCGCY	1 cut(s)	901
BstHHI	GCGC	1 cut(s)	900
BstKTI	GATC	4 cut(s)	115, 533, 625, 731
BstMBI	GATC	4 cut(s)	112, 530, 622, 728
BstMWI	GCNNNNNNNGC	6 cut(s)	48, 152, 395, 442, 473, 904
BstNI	CCWGG	1 cut(s)	904
BstSCI	CCNGG	1 cut(s)	902
BstSFI	CTRYAG	1 cut(s)	375
BstUI	CGCG	1 cut(s)	123
BstV1I	GCAGC	5 cut(s)	59, 142, 188, 382, 598
BstX2I	RGATCY	1 cut(s)	622
BstXI	CCANNNNNNTGG	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	622
Bsu36I	CCTNAGG	1 cut(s)	636
BtrI	CACGTC	1 cut(s)	700
BtsCI	GGATG	1 cut(s)	447
BveI	ACCTGC	3 cut(s)	40, 368, 380
Cac8I	GCNNGC	2 cut(s)	148, 282
CaiI	CAGNNNCTG	2 cut(s)	395, 476
CfoI	GCGC	1 cut(s)	900
Cfr10I	RCCGGY	1 cut(s)	280
Cfr13I	GGNCC	2 cut(s)	768, 815
Csp6I	GTAC	2 cut(s)	410, 742
CspCI	CAANNNNNGTGG	2 cut(s)	807, 842
CviAII	CATG	3 cut(s)	43, 219, 794
CviQI	GTAC	2 cut(s)	410, 742
DdeI	CTNAG	5 cut(s)	54, 353, 463, 495, 636
DinI	GGCGCC	1 cut(s)	899
DpnI	GATC	4 cut(s)	114, 532, 624, 730
DpnII	GATC	4 cut(s)	112, 530, 622, 728
DraI	TTTAAA	1 cut(s)	604
Eam1104I	CTCTTC	1 cut(s)	613
EarI	CTCTTC	1 cut(s)	613
Eco130I	CCWWGG	1 cut(s)	745
Eco47I	GGWCC	2 cut(s)	768, 815
Eco81I	CCTNAGG	1 cut(s)	636
EcoRII	CCWGG	1 cut(s)	902
EcoT14I	CCWWGG	1 cut(s)	745
EgeI	GGCGCC	1 cut(s)	899
EheI	GGCGCC	1 cut(s)	899
ErhI	CCWWGG	1 cut(s)	745
FaeI	CATG	3 cut(s)	46, 222, 797
FalI	AAGNNNNNCTT	2 cut(s)	781, 813
FaqI	GGGAC	1 cut(s)	781
FatI	CATG	3 cut(s)	42, 218, 793
FauI	CCCGC	1 cut(s)	514
Fnu4HI	GCNGC	6 cut(s)	73, 156, 177, 396, 587, 612
FokI	GGATG	1 cut(s)	454
Fsp4HI	GCNGC	6 cut(s)	73, 156, 177, 396, 587, 612
FspBI	CTAG	2 cut(s)	87, 608
GlaI	GCGC	1 cut(s)	899
GluI	GCNGC	6 cut(s)	73, 156, 177, 396, 587, 612
GsuI	CTGGAG	1 cut(s)	696
HaeII	RGCGCY	1 cut(s)	901
HapII	CCGG	1 cut(s)	281
HhaI	GCGC	1 cut(s)	900
Hin1I	GRCGYC	1 cut(s)	898
Hin1II	CATG	3 cut(s)	46, 222, 797
Hin6I	GCGC	1 cut(s)	898
HinP1I	GCGC	1 cut(s)	898
HpaII	CCGG	1 cut(s)	281
HphI	GGTGA	1 cut(s)	21
Hpy188I	TCNGA	3 cut(s)	55, 333, 627
Hpy188III	TCNNGA	4 cut(s)	249, 695, 732, 866
HpyAV	CCTTC	4 cut(s)	52, 229, 779, 799
HpyCH4III	ACNGT	1 cut(s)	456
HpyCH4IV	ACGT	2 cut(s)	336, 699
HpyCH4V	TGCA	6 cut(s)	4, 377, 389, 445, 576, 668
HpyF10VI	GCNNNNNNNGC	6 cut(s)	48, 152, 395, 442, 473, 904
HpyF3I	CTNAG	5 cut(s)	54, 353, 463, 495, 636
HpySE526I	ACGT	2 cut(s)	336, 699
Hsp92I	GRCGYC	1 cut(s)	898
Hsp92II	CATG	3 cut(s)	46, 222, 797
HspAI	GCGC	1 cut(s)	898
KasI	GGCGCC	1 cut(s)	897
KroI	GCCGGC	1 cut(s)	280
KroNI	GCCGGC	1 cut(s)	282
Kzo9I	GATC	4 cut(s)	112, 530, 622, 728
LmnI	GCTCC	1 cut(s)	677
Lsp1109I	GCAGC	5 cut(s)	59, 142, 188, 382, 598
LweI	GCATC	5 cut(s)	432, 463, 550, 585, 916
MaeI	CTAG	2 cut(s)	87, 608
MaeII	ACGT	2 cut(s)	336, 699
MalI	GATC	4 cut(s)	114, 532, 624, 730
MboI	GATC	4 cut(s)	112, 530, 622, 728
MboII	GAAGA	3 cut(s)	393, 630, 794
MflI	RGATCY	1 cut(s)	622
MluCI	AATT	3 cut(s)	225, 648, 750
Mly113I	GGCGCC	1 cut(s)	898
MmeI	TCCRAC	2 cut(s)	443, 793
MnlI	CCTC	6 cut(s)	418, 472, 493, 631, 702, 883
MroNI	GCCGGC	1 cut(s)	280
MseI	TTAA	4 cut(s)	603, 647, 716, 919
MslI	CAYNNNNRTG	1 cut(s)	41
MspI	CCGG	1 cut(s)	281
MspR9I	CCNGG	1 cut(s)	904
MvaI	CCWGG	1 cut(s)	904
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	6 cut(s)	48, 152, 395, 442, 473, 904
NaeI	GCCGGC	1 cut(s)	282
NarI	GGCGCC	1 cut(s)	898
NdeII	GATC	4 cut(s)	112, 530, 622, 728
NgoMIV	GCCGGC	1 cut(s)	280
NlaIII	CATG	3 cut(s)	46, 222, 797
NlaIV	GGNNCC	4 cut(s)	63, 382, 769, 899
NspV	TTCGAA	1 cut(s)	592
PaqCI	CACCTGC	3 cut(s)	40, 368, 380
PdiI	GCCGGC	1 cut(s)	282
PkrI	GCNGC	6 cut(s)	74, 157, 178, 397, 588, 613
PluTI	GGCGCC	1 cut(s)	901
PshBI	ATTAAT	1 cut(s)	716
Psp6I	CCWGG	1 cut(s)	902
PspGI	CCWGG	1 cut(s)	902
PspN4I	GGNNCC	4 cut(s)	63, 382, 769, 899
PspPI	GGNCC	2 cut(s)	768, 815
PsrI	GAACNNNNNNTAC	2 cut(s)	829, 861
PstI	CTGCAG	1 cut(s)	379
PstNI	CAGNNNCTG	2 cut(s)	395, 476
PsuI	RGATCY	1 cut(s)	622
RsaI	GTAC	2 cut(s)	411, 743
RsaNI	GTAC	2 cut(s)	410, 742
RseI	CAYNNNNRTG	1 cut(s)	41
SaqAI	TTAA	4 cut(s)	603, 647, 716, 919
SatI	GCNGC	6 cut(s)	73, 156, 177, 396, 587, 612
Sau3AI	GATC	4 cut(s)	112, 530, 622, 728
Sau96I	GGNCC	2 cut(s)	768, 815
ScrFI	CCNGG	1 cut(s)	904
SfaNI	GCATC	5 cut(s)	432, 463, 550, 585, 916
SfcI	CTRYAG	1 cut(s)	375
SfoI	GGCGCC	1 cut(s)	899
SfuI	TTCGAA	1 cut(s)	592
SinI	GGWCC	2 cut(s)	768, 815
SmiMI	CAYNNNNRTG	1 cut(s)	41
SmlI	CTYRAG	1 cut(s)	887
SmoI	CTYRAG	1 cut(s)	887
Sse9I	AATT	3 cut(s)	225, 648, 750
SsiI	CCGC	4 cut(s)	150, 450, 521, 611
SspDI	GGCGCC	1 cut(s)	897
SspI	AATATT	1 cut(s)	852
SspMI	CTAG	2 cut(s)	87, 608
StyD4I	CCNGG	1 cut(s)	902
StyI	CCWWGG	1 cut(s)	745
TaaI	ACNGT	1 cut(s)	456
TaiI	ACGT	2 cut(s)	339, 702
TaqI	TCGA	3 cut(s)	111, 208, 592
TasI	AATT	3 cut(s)	225, 648, 750
TauI	GCSGC	1 cut(s)	614
Tru1I	TTAA	4 cut(s)	603, 647, 716, 919
Tru9I	TTAA	4 cut(s)	603, 647, 716, 919
TseI	GCWGC	5 cut(s)	72, 155, 176, 395, 586
TspDTI	ATGAA	1 cut(s)	324
TspGWI	ACGGA	2 cut(s)	454, 470
VpaK11BI	GGWCC	2 cut(s)	768, 815
VspI	ATTAAT	1 cut(s)	716
XapI	RAATTY	1 cut(s)	750
XcmI	CCANNNNNNNNNTGG	1 cut(s)	825
XspI	CTAG	2 cut(s)	87, 608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.