Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00292

Orthogroup ID

OG0004569

Physical Location & Seq

Genomic Coordinates Reverse (-)

11364 .. 17817

Gene Structure 6454 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G007910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGAGTAAGGAGCCAAATGACTCTCCGGCAATAGTCAGTGGCACGCCATTCGATTTCTTGGGTGTTTTCTGCGATAGTGTCATAGCTGGTGGCGCTGCTGGTGTTGTTGTGGAAGCTGCATTATACCCAATTGACACGATAAAAACTCGATTGCAGGTTGCTCATGCCGGAGGAAAAATTATGTTGAAGGGTCTATATTCGGGATTGGCTGGAAACCTTGCTGGTGTTTTACCGGCTTCTGCTATATTTGTTGGTGTATATGAACCTACGAAGCAGAAATTGCTGAAGTCACTCCCAGAAAATCTCAGTGCTTTAGCTCATTTGACTGCAGGTGCTATTGGAGGTGCTGCTTCTTCTATTGTACGAGTGCCAACAGAGGTTGTCAAGCAAAGGATGCAAACTGCGCAATTTGCTTCTGCCCCAGATGCTGTTCGCCTTATTCTTGCTAAAGAGGGTTTCAAAGGTCTTTATGCGGGGTACGGATCATTCCTATTGCGAGATTTACCATTTGATGCAGTTCAGTTTTGCATCTATGAGCAACTTCACATAGGGTTTAAACTAGCAGCACGAAGAGATCTGAACGACCCTGAGGTTGCTATGATTGGTGCTTTTGCTGGTGCAATAACTGGGGCTATAACTACTCCTCTTGATGTGATAAAAACAAGATTAATGGTTCAGGGATCAGAAAACCAGTACCAAGGAATTTGTGACTGTGTTAGGACCATAATGAGAGAAGAAGGAAGTCCTGCTTTCTGGAAGGGCATTGGGCCACGAGTACTGTGGATAGGTATCGGAGGTTCAATTTTCTTTGGAGTTCTCGAAAGAACGAAGCAAATACTTGAGCAGAGGCGCATCAGGGATCAGAAGTCCAAGCATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0008150 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

293

Amino Acids

31.38

Weight (kDa)

9.11

Isoelectric Point (pI)

33.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	25 - 96	4.6e-11	Mitochondrial carrier protein
Mito_carr	PF00153	101 - 182	1.3e-18	Mitochondrial carrier protein
Mito_carr	PF00153	198 - 282	3.4e-24	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34065 AT1G34065
fragaria_vesca	FvH4_2g12990 FvH4_2g12990 FvH4_2g12990 FvH4_2g12990
malus_domestica	MD05G1033900.v1.1
prunus_persica	Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1
pyrus_communis	pycom05g02450
rosa_chinensis	RchiOBHm_Chr6g0274151
rosa_laevigata	RLG00000013576
rosa_multiflora	Rmu_sc0000939.1_g000009 Rmu_sc0001939.1_g000020 Rmu_sc0002577.1_g000002
rosa_roxburghii	Rroxscaffold_7G00194510
rosa_rugosa	Rorug06G0079400 Rorug06G0079500
rosa_samantha	Rh4CG128700 Rh6AG194700 Rh6CG199100 Rh6CG438900 Rh6DG190600
rosa_wichuraiana	Rw0G007910 Rw5G039420 Rw6G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	320
Acc16I	TGCGCA	1 cut(s)	405
Acc36I	ACCTGC	2 cut(s)	145, 320
AciI	CCGC	1 cut(s)	473
AclWI	GGATC	3 cut(s)	490, 688, 867
AcsI	RAATTY	1 cut(s)	702
AcuI	CTGAAG	1 cut(s)	305
AfaI	GTAC	4 cut(s)	363, 479, 695, 777
AgsI	TTSAA	3 cut(s)	187, 460, 801
AluBI	AGCT	3 cut(s)	86, 116, 317
AluI	AGCT	3 cut(s)	86, 116, 317
AlwI	GGATC	3 cut(s)	490, 688, 867
AlwNI	CAGNNNCTG	1 cut(s)	428
AoxI	GGCC	1 cut(s)	767
ApeKI	GCWGC	4 cut(s)	95, 116, 347, 563
ApoI	RAATTY	1 cut(s)	702
AseI	ATTAAT	1 cut(s)	668
AspLEI	GCGC	3 cut(s)	95, 406, 852
AspS9I	GGNCC	2 cut(s)	720, 767
AvaII	GGWCC	1 cut(s)	720
AxyI	CCTNAGG	1 cut(s)	588
BauI	CACGAG	1 cut(s)	771
BbvI	GCAGC	4 cut(s)	82, 103, 334, 575
BcgI	CGANNNNNNTGC	2 cut(s)	31, 65
BfaI	CTAG	1 cut(s)	560
BfmI	CTRYAG	1 cut(s)	327
BfoI	RGCGCY	1 cut(s)	96
BfuAI	ACCTGC	2 cut(s)	145, 320
BglII	AGATCT	1 cut(s)	574
BisI	GCNGC	4 cut(s)	96, 117, 348, 564
BlsI	GCNGC	4 cut(s)	97, 118, 349, 565
BmcAI	AGTACT	1 cut(s)	777
Bme18I	GGWCC	1 cut(s)	720
BmgT120I	GGNCC	2 cut(s)	720, 767
BmiI	GGNNCC	1 cut(s)	12
BmrI	ACTGGG	1 cut(s)	636
BmsI	GCATC	5 cut(s)	384, 415, 502, 537, 861
BmuI	ACTGGG	1 cut(s)	636
BpuEI	CTTGAG	1 cut(s)	860
BsaBI	GATNNNNATC	1 cut(s)	788
BsaJI	CCNNGG	1 cut(s)	697
Bse118I	RCCGGY	1 cut(s)	232
Bse1I	ACTGG	2 cut(s)	631, 691
Bse21I	CCTNAGG	1 cut(s)	588
Bse8I	GATNNNNATC	1 cut(s)	788
BseDI	CCNNGG	1 cut(s)	697
BseGI	GGATG	1 cut(s)	399
BseJI	GATNNNNATC	1 cut(s)	788
BseMII	CTCAG	2 cut(s)	319, 579
BseNI	ACTGG	2 cut(s)	631, 691
BseRI	GAGGAG	1 cut(s)	633
BseXI	GCAGC	4 cut(s)	82, 103, 334, 575
BshFI	GGCC	1 cut(s)	769
BsiSI	CCGG	3 cut(s)	26, 168, 233
BsnI	GGCC	1 cut(s)	769
Bsp143I	GATC	4 cut(s)	482, 574, 680, 859
BspACI	CCGC	1 cut(s)	473
BspANI	GGCC	1 cut(s)	769
BspCNI	CTCAG	2 cut(s)	318, 580
BspLI	GGNNCC	1 cut(s)	12
BspMAI	CTGCAG	1 cut(s)	331
BspMI	ACCTGC	2 cut(s)	145, 320
BspPI	GGATC	3 cut(s)	490, 688, 867
BsrFI	RCCGGY	1 cut(s)	232
BsrI	ACTGG	2 cut(s)	631, 691
BssAI	RCCGGY	1 cut(s)	232
BssECI	CCNNGG	1 cut(s)	697
BssMI	GATC	4 cut(s)	482, 574, 680, 859
BssSI	CACGAG	1 cut(s)	771
BssT1I	CCWWGG	1 cut(s)	697
Bst2BI	CACGAG	1 cut(s)	771
Bst4CI	ACNGT	2 cut(s)	713, 780
Bst6I	CTCTTC	1 cut(s)	565
BstAPI	GCANNNNNTGC	2 cut(s)	280, 394
BstC8I	GCNNGC	1 cut(s)	44
BstDEI	CTNAG	2 cut(s)	305, 588
BstF5I	GGATG	1 cut(s)	399
BstH2I	RGCGCY	1 cut(s)	96
BstHHI	GCGC	3 cut(s)	95, 406, 852
BstKTI	GATC	4 cut(s)	485, 577, 683, 862
BstMBI	GATC	4 cut(s)	482, 574, 680, 859
BstMWI	GCNNNNNNNGC	6 cut(s)	92, 280, 394, 403, 410, 425
BstSFI	CTRYAG	1 cut(s)	327
BstV1I	GCAGC	4 cut(s)	82, 103, 334, 575
BstX2I	RGATCY	1 cut(s)	574
BstYI	RGATCY	1 cut(s)	574
Bsu36I	CCTNAGG	1 cut(s)	588
BsuRI	GGCC	1 cut(s)	769
BtsCI	GGATG	1 cut(s)	399
BtsIMutI	CAGTG	2 cut(s)	43, 313
BveI	ACCTGC	2 cut(s)	145, 320
Cac8I	GCNNGC	1 cut(s)	44
CaiI	CAGNNNCTG	1 cut(s)	428
CfoI	GCGC	3 cut(s)	95, 406, 852
Cfr10I	RCCGGY	1 cut(s)	232
Cfr13I	GGNCC	2 cut(s)	720, 767
Csp6I	GTAC	4 cut(s)	362, 478, 694, 776
CviAII	CATG	1 cut(s)	164
CviJI	RGCY	8 cut(s)	13, 86, 116, 209, 236, 317, 632, 769
CviKI_1	RGCY	8 cut(s)	13, 86, 116, 209, 236, 317, 632, 769
CviQI	GTAC	4 cut(s)	362, 478, 694, 776
DdeI	CTNAG	2 cut(s)	305, 588
DpnI	GATC	4 cut(s)	484, 576, 682, 861
DpnII	GATC	4 cut(s)	482, 574, 680, 859
DraI	TTTAAA	1 cut(s)	556
Eam1104I	CTCTTC	1 cut(s)	565
EarI	CTCTTC	1 cut(s)	565
Eco130I	CCWWGG	1 cut(s)	697
Eco47I	GGWCC	1 cut(s)	720
Eco57I	CTGAAG	1 cut(s)	305
Eco81I	CCTNAGG	1 cut(s)	588
EcoT14I	CCWWGG	1 cut(s)	697
ErhI	CCWWGG	1 cut(s)	697
FaeI	CATG	1 cut(s)	167
FalI	AAGNNNNNCTT	2 cut(s)	733, 765
FatI	CATG	1 cut(s)	163
FauI	CCCGC	1 cut(s)	466
Fnu4HI	GCNGC	4 cut(s)	96, 117, 348, 564
FokI	GGATG	1 cut(s)	406
Fsp4HI	GCNGC	4 cut(s)	96, 117, 348, 564
FspBI	CTAG	1 cut(s)	560
FspI	TGCGCA	1 cut(s)	405
GlaI	GCGC	3 cut(s)	94, 405, 851
GluI	GCNGC	4 cut(s)	96, 117, 348, 564
HaeII	RGCGCY	1 cut(s)	96
HaeIII	GGCC	1 cut(s)	769
HapII	CCGG	3 cut(s)	26, 168, 233
HhaI	GCGC	3 cut(s)	95, 406, 852
Hin1II	CATG	1 cut(s)	167
Hin6I	GCGC	3 cut(s)	93, 404, 850
HinP1I	GCGC	3 cut(s)	93, 404, 850
HinfI	GANTC	1 cut(s)	20
HpaII	CCGG	3 cut(s)	26, 168, 233
Hpy188I	TCNGA	4 cut(s)	579, 685, 794, 864
Hpy188III	TCNNGA	4 cut(s)	201, 647, 754, 818
HpyAV	CCTTC	3 cut(s)	181, 731, 751
HpyCH4III	ACNGT	2 cut(s)	713, 780
HpyCH4V	TGCA	7 cut(s)	119, 154, 329, 397, 515, 528, 620
HpyF10VI	GCNNNNNNNGC	6 cut(s)	92, 280, 394, 403, 410, 425
HpyF3I	CTNAG	2 cut(s)	305, 588
Hsp92II	CATG	1 cut(s)	167
HspAI	GCGC	3 cut(s)	93, 404, 850
Kzo9I	GATC	4 cut(s)	482, 574, 680, 859
LmnI	GCTCC	1 cut(s)	10
Lsp1109I	GCAGC	4 cut(s)	82, 103, 334, 575
LweI	GCATC	5 cut(s)	384, 415, 502, 537, 861
MaeI	CTAG	1 cut(s)	560
MaeIII	GTNAC	2 cut(s)	288, 707
MalI	GATC	4 cut(s)	484, 576, 682, 861
MboI	GATC	4 cut(s)	482, 574, 680, 859
MboII	GAAGA	3 cut(s)	345, 582, 746
MfeI	CAATTG	1 cut(s)	129
MflI	RGATCY	1 cut(s)	574
MluCI	AATT	6 cut(s)	129, 177, 278, 407, 702, 801
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	8 cut(s)	164, 335, 370, 445, 583, 654, 788, 840
MseI	TTAA	2 cut(s)	555, 668
MspI	CCGG	3 cut(s)	26, 168, 233
MssI	GTTTAAAC	1 cut(s)	556
MunI	CAATTG	1 cut(s)	129
MwoI	GCNNNNNNNGC	6 cut(s)	92, 280, 394, 403, 410, 425
NdeII	GATC	4 cut(s)	482, 574, 680, 859
NlaIII	CATG	1 cut(s)	167
NlaIV	GGNNCC	1 cut(s)	12
NmuCI	GTSAC	2 cut(s)	288, 707
NsbI	TGCGCA	1 cut(s)	405
PaqCI	CACCTGC	1 cut(s)	320
PkrI	GCNGC	4 cut(s)	97, 118, 349, 565
PleI	GAGTC	1 cut(s)	14
PmeI	GTTTAAAC	1 cut(s)	556
PpsI	GAGTC	1 cut(s)	14
PshBI	ATTAAT	1 cut(s)	668
PspN4I	GGNNCC	1 cut(s)	12
PspPI	GGNCC	2 cut(s)	720, 767
PsrI	GAACNNNNNNTAC	2 cut(s)	781, 813
PstI	CTGCAG	1 cut(s)	331
PstNI	CAGNNNCTG	1 cut(s)	428
PsuI	RGATCY	1 cut(s)	574
RsaI	GTAC	4 cut(s)	363, 479, 695, 777
RsaNI	GTAC	4 cut(s)	362, 478, 694, 776
SaqAI	TTAA	2 cut(s)	555, 668
SatI	GCNGC	4 cut(s)	96, 117, 348, 564
Sau3AI	GATC	4 cut(s)	482, 574, 680, 859
Sau96I	GGNCC	2 cut(s)	720, 767
ScaI	AGTACT	1 cut(s)	777
SchI	GAGTC	1 cut(s)	14
SfaNI	GCATC	5 cut(s)	384, 415, 502, 537, 861
SfcI	CTRYAG	1 cut(s)	327
SinI	GGWCC	1 cut(s)	720
SmlI	CTYRAG	1 cut(s)	839
SmoI	CTYRAG	1 cut(s)	839
Sse9I	AATT	6 cut(s)	129, 177, 278, 407, 702, 801
SsiI	CCGC	1 cut(s)	473
SspMI	CTAG	1 cut(s)	560
StyI	CCWWGG	1 cut(s)	697
TaaI	ACNGT	2 cut(s)	713, 780
TaqI	TCGA	3 cut(s)	51, 148, 819
TasI	AATT	6 cut(s)	129, 177, 278, 407, 702, 801
TatI	WGTACW	1 cut(s)	775
Tru1I	TTAA	2 cut(s)	555, 668
Tru9I	TTAA	2 cut(s)	555, 668
TscAI	CASTG	2 cut(s)	43, 313
TseFI	GTSAC	2 cut(s)	288, 707
TseI	GCWGC	4 cut(s)	95, 116, 347, 563
Tsp45I	GTSAC	2 cut(s)	288, 707
TspDTI	ATGAA	1 cut(s)	276
TspGWI	ACGGA	1 cut(s)	495
TspRI	CASTG	2 cut(s)	43, 313
VpaK11BI	GGWCC	1 cut(s)	720
VspI	ATTAAT	1 cut(s)	668
XapI	RAATTY	1 cut(s)	702
XcmI	CCANNNNNNNNNTGG	1 cut(s)	777
XspI	CTAG	1 cut(s)	560
ZrmI	AGTACT	1 cut(s)	777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.