Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004569

Physical Location & Seq

Genomic Coordinates Reverse (-)

2892393 .. 2897945

Gene Structure 5553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g02450.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGCAAGCCAAAACTTCTCAATCACATTCACCCGCCGTCAGGATGGGTAGCTCTGAGAAGGTGCCAAATGGCTGCTTGACAACAGCCAGTGCTGGAGATGATACGCCATTCGATCTTTTACGCGATTTTTACGATGGTGTCATAGCTGGCGGTGCTGCTGGTGTTTTTGTAGAAGCAGCTTTATACCCTATTGACACAATAAAAACTCGATTACAGGTTGCCCATGCTGGAGGGCAAATTATGTTGAAGGGTCTATATTCAGGATTGGCTGGAAACCTTGCTGGTGTCTTACCGGCTTCTGCCATATTTGTTGGTGTTTATGAACCTACAAAGCAGAAACTTCTGAACGCATTGCCAGAAAACCTTAGTGCTTTAGCTCATTTGGTTGTCAAGCAAAGGATGCAAACCGCACAATTTTCCTCAGCCCCAGATGCTGTCCATCTTATTCTTGCTAAGGAGGGTTTCAAAGGTCTTTACGCGGGGTATGGATCATTCCTACTGCGAGATTTACCATTTGATGCTGTTCAGTTTTGCATCTATGAGCAGCTTCGAATAGGATTTAAACTAGCGGCACGAAGAGATCTGAAAGACCCTGAGGTTGCTTTAATTGGTGCTTTTGCTGGTGCAATAACTGGAGCTATAACTACTCCCCTTGACGTGATAAAAACGAGATTAATGGTTCAGGGATCAGGAAACCAGTACCAAGGAATTTGTGATTGTGTTGGGACCATAATGAGAGAAGAAGGAAGTCGTGCTTTTTGGAAGGGTGTTGGACCACGAGTTTTGTGGATAGGTATTGGGGGTTCAATATTTTTCGGTGTTCTTGAAAGGACAAAGCAAATACTTGAGGGAAGGCGCCCCAGGCATCACAAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0008150 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

293

Amino Acids

31.29

Weight (kDa)

9.24

Isoelectric Point (pI)

31.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34065 AT1G34065
fragaria_vesca	FvH4_2g12990 FvH4_2g12990 FvH4_2g12990 FvH4_2g12990
malus_domestica	MD05G1033900.v1.1
prunus_persica	Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1
pyrus_communis	pycom05g02450
rosa_chinensis	RchiOBHm_Chr6g0274151
rosa_laevigata	RLG00000013576
rosa_multiflora	Rmu_sc0000939.1_g000009 Rmu_sc0001939.1_g000020 Rmu_sc0002577.1_g000002
rosa_roxburghii	Rroxscaffold_7G00194510
rosa_rugosa	Rorug06G0079400 Rorug06G0079500
rosa_samantha	Rh4CG128700 Rh6AG194700 Rh6CG199100 Rh6CG438900 Rh6DG190600
rosa_wichuraiana	Rw0G007910 Rw5G039420 Rw6G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	61, 855
AccII	CGCG	2 cut(s)	123, 479
AciI	CCGC	5 cut(s)	33, 150, 408, 479, 569
AclWI	GGATC	2 cut(s)	496, 694
AcsI	RAATTY	1 cut(s)	708
AcyI	GRCGYC	1 cut(s)	856
AfaI	GTAC	1 cut(s)	701
AfiI	CCNNNNNNNGG	1 cut(s)	39
AgsI	TTSAA	4 cut(s)	247, 466, 807, 827
AjiI	CACGTC	1 cut(s)	658
AjnI	CCWGG	1 cut(s)	860
AluBI	AGCT	6 cut(s)	51, 146, 179, 377, 547, 638
AluI	AGCT	6 cut(s)	51, 146, 179, 377, 547, 638
AlwI	GGATC	2 cut(s)	496, 694
AlwNI	CAGNNNCTG	1 cut(s)	434
ApeKI	GCWGC	4 cut(s)	72, 155, 176, 544
ApoI	RAATTY	1 cut(s)	708
AseI	ATTAAT	1 cut(s)	674
AspLEI	GCGC	1 cut(s)	858
AspS9I	GGNCC	2 cut(s)	726, 773
AsuHPI	GGTGA	1 cut(s)	21
AsuII	TTCGAA	1 cut(s)	550
AvaII	GGWCC	2 cut(s)	726, 773
AxyI	CCTNAGG	1 cut(s)	594
BanI	GGYRCC	2 cut(s)	61, 855
BauI	CACGAG	1 cut(s)	777
BbvCI	CCTCAGC	1 cut(s)	421
BbvI	GCAGC	4 cut(s)	59, 142, 188, 556
BccI	CCATC	3 cut(s)	37, 128, 447
BceAI	ACGGC	1 cut(s)	20
BciT130I	CCWGG	1 cut(s)	862
BfaI	CTAG	1 cut(s)	566
BfoI	RGCGCY	1 cut(s)	859
BglII	AGATCT	1 cut(s)	580
BisI	GCNGC	5 cut(s)	73, 156, 177, 545, 570
BlsI	GCNGC	5 cut(s)	74, 157, 178, 546, 571
Bme1390I	CCNGG	1 cut(s)	862
Bme18I	GGWCC	2 cut(s)	726, 773
BmgBI	CACGTC	1 cut(s)	658
BmgT120I	GGNCC	2 cut(s)	726, 773
BmiI	GGNNCC	3 cut(s)	63, 727, 857
BmrFI	CCNGG	1 cut(s)	862
BmsI	GCATC	5 cut(s)	390, 421, 508, 543, 874
BpmI	CTGGAG	3 cut(s)	114, 249, 654
Bpu10I	CCTNAGC	2 cut(s)	421, 453
Bpu14I	TTCGAA	1 cut(s)	550
BpuEI	CTTGAG	1 cut(s)	866
BsaHI	GRCGYC	1 cut(s)	856
BsaJI	CCNNGG	2 cut(s)	703, 860
Bsc4I	CCNNNNNNNGG	1 cut(s)	39
Bse118I	RCCGGY	1 cut(s)	292
Bse1I	ACTGG	3 cut(s)	87, 637, 697
Bse21I	CCTNAGG	1 cut(s)	594
Bse3DI	GCAATG	1 cut(s)	350
BseBI	CCWGG	1 cut(s)	862
BseDI	CCNNGG	2 cut(s)	703, 860
BseGI	GGATG	2 cut(s)	48, 405
BseLI	CCNNNNNNNGG	1 cut(s)	39
BseMI	GCAATG	1 cut(s)	350
BseMII	CTCAG	3 cut(s)	45, 435, 585
BseNI	ACTGG	3 cut(s)	87, 637, 697
BseXI	GCAGC	4 cut(s)	59, 142, 188, 556
Bsh1236I	CGCG	2 cut(s)	123, 479
BshNI	GGYRCC	2 cut(s)	61, 855
BsiSI	CCGG	1 cut(s)	293
BslFI	GGGAC	1 cut(s)	739
BslI	CCNNNNNNNGG	1 cut(s)	39
BsmFI	GGGAC	1 cut(s)	739
Bsp119I	TTCGAA	1 cut(s)	550
Bsp143I	GATC	4 cut(s)	112, 488, 580, 686
BspACI	CCGC	5 cut(s)	33, 150, 408, 479, 569
BspCNI	CTCAG	3 cut(s)	46, 434, 586
BspFNI	CGCG	2 cut(s)	123, 479
BspLI	GGNNCC	3 cut(s)	63, 727, 857
BspPI	GGATC	2 cut(s)	496, 694
BspT104I	TTCGAA	1 cut(s)	550
BspT107I	GGYRCC	2 cut(s)	61, 855
BsrDI	GCAATG	1 cut(s)	350
BsrFI	RCCGGY	1 cut(s)	292
BsrI	ACTGG	3 cut(s)	87, 637, 697
BssAI	RCCGGY	1 cut(s)	292
BssECI	CCNNGG	2 cut(s)	703, 860
BssMI	GATC	4 cut(s)	112, 488, 580, 686
BssNI	GRCGYC	1 cut(s)	856
BssSI	CACGAG	1 cut(s)	777
BssT1I	CCWWGG	1 cut(s)	703
Bst2BI	CACGAG	1 cut(s)	777
Bst2UI	CCWGG	1 cut(s)	862
Bst6I	CTCTTC	1 cut(s)	571
BstACI	GRCGYC	1 cut(s)	856
BstAPI	GCANNNNNTGC	1 cut(s)	400
BstBI	TTCGAA	1 cut(s)	550
BstC8I	GCNNGC	2 cut(s)	6, 148
BstDEI	CTNAG	5 cut(s)	54, 365, 421, 453, 594
BstF5I	GGATG	2 cut(s)	48, 405
BstFNI	CGCG	2 cut(s)	123, 479
BstH2I	RGCGCY	1 cut(s)	859
BstHHI	GCGC	1 cut(s)	858
BstKTI	GATC	4 cut(s)	115, 491, 583, 689
BstMBI	GATC	4 cut(s)	112, 488, 580, 686
BstMWI	GCNNNNNNNGC	4 cut(s)	152, 400, 431, 862
BstNI	CCWGG	1 cut(s)	862
BstSCI	CCNGG	1 cut(s)	860
BstUI	CGCG	2 cut(s)	123, 479
BstV1I	GCAGC	4 cut(s)	59, 142, 188, 556
BstX2I	RGATCY	1 cut(s)	580
BstYI	RGATCY	1 cut(s)	580
Bsu36I	CCTNAGG	1 cut(s)	594
BtrI	CACGTC	1 cut(s)	658
BtsCI	GGATG	2 cut(s)	48, 405
BtsIMutI	CAGTG	1 cut(s)	94
Cac8I	GCNNGC	2 cut(s)	6, 148
CaiI	CAGNNNCTG	1 cut(s)	434
CfoI	GCGC	1 cut(s)	858
Cfr10I	RCCGGY	1 cut(s)	292
Cfr13I	GGNCC	2 cut(s)	726, 773
Csp6I	GTAC	1 cut(s)	700
CspCI	CAANNNNNGTGG	2 cut(s)	765, 800
CviAII	CATG	1 cut(s)	224
CviQI	GTAC	1 cut(s)	700
DdeI	CTNAG	5 cut(s)	54, 365, 421, 453, 594
DinI	GGCGCC	1 cut(s)	857
DpnI	GATC	4 cut(s)	114, 490, 582, 688
DpnII	GATC	4 cut(s)	112, 488, 580, 686
DraI	TTTAAA	1 cut(s)	562
Eam1104I	CTCTTC	1 cut(s)	571
EarI	CTCTTC	1 cut(s)	571
Eco130I	CCWWGG	1 cut(s)	703
Eco47I	GGWCC	2 cut(s)	726, 773
Eco81I	CCTNAGG	1 cut(s)	594
EcoRII	CCWGG	1 cut(s)	860
EcoT14I	CCWWGG	1 cut(s)	703
EgeI	GGCGCC	1 cut(s)	857
EheI	GGCGCC	1 cut(s)	857
ErhI	CCWWGG	1 cut(s)	703
FaeI	CATG	1 cut(s)	227
FalI	AAGNNNNNCTT	2 cut(s)	739, 771
FaqI	GGGAC	1 cut(s)	739
FatI	CATG	1 cut(s)	223
FauI	CCCGC	2 cut(s)	40, 472
Fnu4HI	GCNGC	5 cut(s)	73, 156, 177, 545, 570
FokI	GGATG	2 cut(s)	55, 412
Fsp4HI	GCNGC	5 cut(s)	73, 156, 177, 545, 570
FspBI	CTAG	1 cut(s)	566
GlaI	GCGC	1 cut(s)	857
GluI	GCNGC	5 cut(s)	73, 156, 177, 545, 570
GsuI	CTGGAG	3 cut(s)	114, 249, 654
HaeII	RGCGCY	1 cut(s)	859
HapII	CCGG	1 cut(s)	293
HhaI	GCGC	1 cut(s)	858
Hin1I	GRCGYC	1 cut(s)	856
Hin1II	CATG	1 cut(s)	227
Hin6I	GCGC	1 cut(s)	856
HinP1I	GCGC	1 cut(s)	856
HpaII	CCGG	1 cut(s)	293
HphI	GGTGA	1 cut(s)	21
Hpy188I	TCNGA	3 cut(s)	55, 345, 585
Hpy188III	TCNNGA	5 cut(s)	40, 261, 690, 824, 876
HpyAV	CCTTC	5 cut(s)	52, 241, 737, 757, 846
HpyCH4IV	ACGT	1 cut(s)	657
HpyCH4V	TGCA	4 cut(s)	4, 403, 534, 626
HpyF10VI	GCNNNNNNNGC	4 cut(s)	152, 400, 431, 862
HpyF3I	CTNAG	5 cut(s)	54, 365, 421, 453, 594
HpySE526I	ACGT	1 cut(s)	657
Hsp92I	GRCGYC	1 cut(s)	856
Hsp92II	CATG	1 cut(s)	227
HspAI	GCGC	1 cut(s)	856
KasI	GGCGCC	1 cut(s)	855
Kzo9I	GATC	4 cut(s)	112, 488, 580, 686
LmnI	GCTCC	1 cut(s)	635
Lsp1109I	GCAGC	4 cut(s)	59, 142, 188, 556
LweI	GCATC	5 cut(s)	390, 421, 508, 543, 874
MaeI	CTAG	1 cut(s)	566
MaeII	ACGT	1 cut(s)	657
MalI	GATC	4 cut(s)	114, 490, 582, 688
MboI	GATC	4 cut(s)	112, 488, 580, 686
MboII	GAAGA	2 cut(s)	588, 752
MflI	RGATCY	1 cut(s)	580
MluCI	AATT	4 cut(s)	237, 413, 606, 708
Mly113I	GGCGCC	1 cut(s)	856
MmeI	TCCRAC	1 cut(s)	751
MnlI	CCTC	5 cut(s)	224, 430, 451, 589, 841
MseI	TTAA	3 cut(s)	561, 605, 674
MspI	CCGG	1 cut(s)	293
MspR9I	CCNGG	1 cut(s)	862
MvaI	CCWGG	1 cut(s)	862
MvnI	CGCG	2 cut(s)	123, 479
MwoI	GCNNNNNNNGC	4 cut(s)	152, 400, 431, 862
NarI	GGCGCC	1 cut(s)	856
NdeII	GATC	4 cut(s)	112, 488, 580, 686
NlaIII	CATG	1 cut(s)	227
NlaIV	GGNNCC	3 cut(s)	63, 727, 857
NspV	TTCGAA	1 cut(s)	550
PkrI	GCNGC	5 cut(s)	74, 157, 178, 546, 571
PluTI	GGCGCC	1 cut(s)	859
PshBI	ATTAAT	1 cut(s)	674
Psp6I	CCWGG	1 cut(s)	860
PspGI	CCWGG	1 cut(s)	860
PspN4I	GGNNCC	3 cut(s)	63, 727, 857
PspPI	GGNCC	2 cut(s)	726, 773
PsrI	GAACNNNNNNTAC	2 cut(s)	787, 819
PstNI	CAGNNNCTG	1 cut(s)	434
PsuI	RGATCY	1 cut(s)	580
RsaI	GTAC	1 cut(s)	701
RsaNI	GTAC	1 cut(s)	700
SaqAI	TTAA	3 cut(s)	561, 605, 674
SatI	GCNGC	5 cut(s)	73, 156, 177, 545, 570
Sau3AI	GATC	4 cut(s)	112, 488, 580, 686
Sau96I	GGNCC	2 cut(s)	726, 773
ScrFI	CCNGG	1 cut(s)	862
SfaNI	GCATC	5 cut(s)	390, 421, 508, 543, 874
SfoI	GGCGCC	1 cut(s)	857
SfuI	TTCGAA	1 cut(s)	550
SinI	GGWCC	2 cut(s)	726, 773
SmlI	CTYRAG	1 cut(s)	845
SmoI	CTYRAG	1 cut(s)	845
Sse9I	AATT	4 cut(s)	237, 413, 606, 708
SsiI	CCGC	5 cut(s)	33, 150, 408, 479, 569
SspDI	GGCGCC	1 cut(s)	855
SspI	AATATT	1 cut(s)	810
SspMI	CTAG	1 cut(s)	566
StyD4I	CCNGG	1 cut(s)	860
StyI	CCWWGG	1 cut(s)	703
TaiI	ACGT	1 cut(s)	660
TaqI	TCGA	3 cut(s)	111, 208, 550
TasI	AATT	4 cut(s)	237, 413, 606, 708
TauI	GCSGC	1 cut(s)	572
Tru1I	TTAA	3 cut(s)	561, 605, 674
Tru9I	TTAA	3 cut(s)	561, 605, 674
TscAI	CASTG	1 cut(s)	94
TseI	GCWGC	4 cut(s)	72, 155, 176, 544
TspDTI	ATGAA	1 cut(s)	336
TspRI	CASTG	1 cut(s)	94
VpaK11BI	GGWCC	2 cut(s)	726, 773
VspI	ATTAAT	1 cut(s)	674
XapI	RAATTY	1 cut(s)	708
XcmI	CCANNNNNNNNNTGG	1 cut(s)	783
XspI	CTAG	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.