Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002577.1

Orthogroup ID

OG0004569

Physical Location & Seq

Genomic Coordinates Forward (+)

15745 .. 16784

Gene Structure 1040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002577.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

atgggtaatggtagggaaaagtataactttcagtgtacaagatcaggccattgttattttaacaggtattcagacatcaatcagactgcaggtgctattggaggtgctgcttcttctattgtacgagtgccaacagaggttgtcaagcaaaggatgcaaactgcgcaatttgcttctgccccagatgctgttcgccttattcttgctaaagagggtttcaaaggtctttatgcggggtacggatcattcctattgcgagatttaccatttgatgcagttcagttttgcatctatgagcaacttcacatagggtttaaactagcagcacgaagagatctgaacgaccctgaggttgctatgattggtgcttttgctggtaacttttacattccaactaacttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0008150 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

134

Amino Acids

14.84

Weight (kDa)

8.84

Isoelectric Point (pI)

26.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34065 AT1G34065
fragaria_vesca	FvH4_2g12990 FvH4_2g12990 FvH4_2g12990 FvH4_2g12990
malus_domestica	MD05G1033900.v1.1
prunus_persica	Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1
pyrus_communis	pycom05g02450
rosa_chinensis	RchiOBHm_Chr6g0274151
rosa_laevigata	RLG00000013576
rosa_multiflora	Rmu_sc0000939.1_g000009 Rmu_sc0001939.1_g000020 Rmu_sc0002577.1_g000002
rosa_roxburghii	Rroxscaffold_7G00194510
rosa_rugosa	Rorug06G0079400 Rorug06G0079500
rosa_samantha	Rh4CG128700 Rh6AG194700 Rh6CG199100 Rh6CG438900 Rh6DG190600
rosa_wichuraiana	Rw0G007910 Rw5G039420 Rw6G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	80
Acc16I	TGCGCA	1 cut(s)	165
Acc36I	ACCTGC	1 cut(s)	80
AciI	CCGC	1 cut(s)	233
AclWI	GGATC	1 cut(s)	250
AfaI	GTAC	3 cut(s)	37, 123, 239
AgsI	TTSAA	1 cut(s)	220
AlwI	GGATC	1 cut(s)	250
AlwNI	CAGNNNCTG	1 cut(s)	188
AoxI	GGCC	1 cut(s)	46
ApeKI	GCWGC	2 cut(s)	107, 323
AspLEI	GCGC	1 cut(s)	166
AxyI	CCTNAGG	1 cut(s)	348
BbvI	GCAGC	2 cut(s)	94, 335
BfaI	CTAG	1 cut(s)	320
BfmI	CTRYAG	1 cut(s)	87
BfuAI	ACCTGC	1 cut(s)	80
BglII	AGATCT	1 cut(s)	334
BisI	GCNGC	2 cut(s)	108, 324
BlsI	GCNGC	2 cut(s)	109, 325
BmsI	GCATC	4 cut(s)	144, 175, 262, 297
Bse21I	CCTNAGG	1 cut(s)	348
BseGI	GGATG	1 cut(s)	159
BseMII	CTCAG	1 cut(s)	339
BseXI	GCAGC	2 cut(s)	94, 335
BshFI	GGCC	1 cut(s)	48
BsnI	GGCC	1 cut(s)	48
Bsp1407I	TGTACA	1 cut(s)	35
Bsp143I	GATC	3 cut(s)	41, 242, 334
BspACI	CCGC	1 cut(s)	233
BspANI	GGCC	1 cut(s)	48
BspCNI	CTCAG	1 cut(s)	340
BspMAI	CTGCAG	1 cut(s)	91
BspMI	ACCTGC	1 cut(s)	80
BspPI	GGATC	1 cut(s)	250
BsrGI	TGTACA	1 cut(s)	35
BssMI	GATC	3 cut(s)	41, 242, 334
Bst6I	CTCTTC	1 cut(s)	325
BstAPI	GCANNNNNTGC	1 cut(s)	154
BstAUI	TGTACA	1 cut(s)	35
BstDEI	CTNAG	1 cut(s)	348
BstF5I	GGATG	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	166
BstKTI	GATC	3 cut(s)	44, 245, 337
BstMBI	GATC	3 cut(s)	41, 242, 334
BstMWI	GCNNNNNNNGC	4 cut(s)	154, 163, 170, 185
BstSFI	CTRYAG	1 cut(s)	87
BstV1I	GCAGC	2 cut(s)	94, 335
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
Bsu36I	CCTNAGG	1 cut(s)	348
BsuRI	GGCC	1 cut(s)	48
BtsCI	GGATG	1 cut(s)	159
BtsIMutI	CAGTG	1 cut(s)	38
BveI	ACCTGC	1 cut(s)	80
CaiI	CAGNNNCTG	1 cut(s)	188
CfoI	GCGC	1 cut(s)	166
Csp6I	GTAC	3 cut(s)	36, 122, 238
CviJI	RGCY	1 cut(s)	48
CviKI_1	RGCY	1 cut(s)	48
CviQI	GTAC	3 cut(s)	36, 122, 238
DdeI	CTNAG	1 cut(s)	348
DpnI	GATC	3 cut(s)	43, 244, 336
DpnII	GATC	3 cut(s)	41, 242, 334
DraI	TTTAAA	1 cut(s)	316
Eam1104I	CTCTTC	1 cut(s)	325
EarI	CTCTTC	1 cut(s)	325
Eco81I	CCTNAGG	1 cut(s)	348
FaiI	YATR	5 cut(s)	24, 231, 294, 308, 359
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FauI	CCCGC	1 cut(s)	226
Fnu4HI	GCNGC	2 cut(s)	108, 324
FokI	GGATG	1 cut(s)	166
Fsp4HI	GCNGC	2 cut(s)	108, 324
FspBI	CTAG	1 cut(s)	320
FspI	TGCGCA	1 cut(s)	165
GlaI	GCGC	1 cut(s)	165
GluI	GCNGC	2 cut(s)	108, 324
HaeIII	GGCC	1 cut(s)	48
HhaI	GCGC	1 cut(s)	166
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
Hpy166II	GTNNAC	1 cut(s)	36
Hpy188I	TCNGA	3 cut(s)	73, 84, 339
Hpy8I	GTNNAC	1 cut(s)	36
HpyCH4V	TGCA	4 cut(s)	89, 157, 275, 288
HpyF10VI	GCNNNNNNNGC	4 cut(s)	154, 163, 170, 185
HpyF3I	CTNAG	1 cut(s)	348
HspAI	GCGC	1 cut(s)	164
Kzo9I	GATC	3 cut(s)	41, 242, 334
LpnPI	CCDG	6 cut(s)	30, 49, 75, 195, 360, 360
Lsp1109I	GCAGC	2 cut(s)	94, 335
LweI	GCATC	4 cut(s)	144, 175, 262, 297
MaeI	CTAG	1 cut(s)	320
MaeIII	GTNAC	1 cut(s)	377
MalI	GATC	3 cut(s)	43, 244, 336
MboI	GATC	3 cut(s)	41, 242, 334
MboII	GAAGA	2 cut(s)	105, 342
MflI	RGATCY	1 cut(s)	334
MluCI	AATT	1 cut(s)	167
MnlI	CCTC	4 cut(s)	95, 130, 205, 343
MseI	TTAA	2 cut(s)	60, 315
MssI	GTTTAAAC	1 cut(s)	316
MwoI	GCNNNNNNNGC	4 cut(s)	154, 163, 170, 185
NdeII	GATC	3 cut(s)	41, 242, 334
NsbI	TGCGCA	1 cut(s)	165
PaqCI	CACCTGC	1 cut(s)	80
PkrI	GCNGC	2 cut(s)	109, 325
PmeI	GTTTAAAC	1 cut(s)	316
PstI	CTGCAG	1 cut(s)	91
PstNI	CAGNNNCTG	1 cut(s)	188
PsuI	RGATCY	1 cut(s)	334
RsaI	GTAC	3 cut(s)	37, 123, 239
RsaNI	GTAC	3 cut(s)	36, 122, 238
SaqAI	TTAA	2 cut(s)	60, 315
SatI	GCNGC	2 cut(s)	108, 324
Sau3AI	GATC	3 cut(s)	41, 242, 334
SetI	ASST	6 cut(s)	68, 94, 106, 141, 226, 354
SfaNI	GCATC	4 cut(s)	144, 175, 262, 297
SfcI	CTRYAG	1 cut(s)	87
Sse9I	AATT	1 cut(s)	167
SsiI	CCGC	1 cut(s)	233
SspMI	CTAG	1 cut(s)	320
TasI	AATT	1 cut(s)	167
TatI	WGTACW	1 cut(s)	35
Tru1I	TTAA	2 cut(s)	60, 315
Tru9I	TTAA	2 cut(s)	60, 315
TscAI	CASTG	1 cut(s)	38
TseI	GCWGC	2 cut(s)	107, 323
TspGWI	ACGGA	1 cut(s)	255
TspRI	CASTG	1 cut(s)	38
XspI	CTAG	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.