Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004569

Physical Location & Seq

Genomic Coordinates Forward (+)

34940731 .. 34976843

Gene Structure 36113 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG194700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGCAAGCGAAATCTTGTGAGGCACATCCACCGGATGTGATAACCTGCAAAATGAGTAAGGAGCCAAATGAGTCTCTGGCAATAGTCAGTGCCACGCCATTCGATTTCTTGGGTGTTTTCTGCGATAGTGTCATAGCTGGTGGCGCTGCTGGTGTTGTTGTGGAAGCTGCATTATACCCAATTGACACGATAAAAACTCGATTGCAGGTTGCTCATGCCGGAGGAAAAATTATGTTGAAGGGTCTATATTCGGGATTGGCTGGAAACCTTGCTGGTGTTTTACCGGCTTCTGCTATATTTGTTGGTGTATATGAACCTACGAAGCAGAAATTGCTGAAGTCACTCCCAGAAAATCTCAGTGCTTTAGCTCATTTGACTGCAGGTGCTATTGGAGGTGCTGCTTCTTCTATTGTACGAGTGCCAACAGAGGTTGTCAAGCAAAGGATGCAAACTGCGCAATTTGCTTCTGCCCCAGATGCTGTTCGCCTTATTCTTGCTAAAGAGGGTTTCAAAGGTCTTTATGCGGGGTACGGATCATTCCTATTGCGAGATTTACCATTTGATGCAGTTCAGTTTTGCATCTATGAGCAACTTCACATAGGGTTTAAACTAGCAGCACGAAGAGATCTGAACGACCCTGAGGTTGCTATGATTGGTGCTTTTGCTGTTATTGTGGGTGGGGCTGGAATATGTTTTGCAAGGGTTCTAATTTCACACATGTCTGAAGGATGGAATATCAAGATTCTAAGAGGAGTATCTGATCCCAACAAACAAGTTCTACTTAAGCTAGAGACTCTGAAACCAACAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0008150 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

270

Amino Acids

28.56

Weight (kDa)

8.75

Isoelectric Point (pI)

31.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	42 - 113	4e-11	Mitochondrial carrier protein
Mito_carr	PF00153	118 - 199	1.1e-18	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34065 AT1G34065
fragaria_vesca	FvH4_2g12990 FvH4_2g12990 FvH4_2g12990 FvH4_2g12990
malus_domestica	MD05G1033900.v1.1
prunus_persica	Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1
pyrus_communis	pycom05g02450
rosa_chinensis	RchiOBHm_Chr6g0274151
rosa_laevigata	RLG00000013576
rosa_multiflora	Rmu_sc0000939.1_g000009 Rmu_sc0001939.1_g000020 Rmu_sc0002577.1_g000002
rosa_roxburghii	Rroxscaffold_7G00194510
rosa_rugosa	Rorug06G0079400 Rorug06G0079500
rosa_samantha	Rh4CG128700 Rh6AG194700 Rh6CG199100 Rh6CG438900 Rh6DG190600
rosa_wichuraiana	Rw0G007910 Rw5G039420 Rw6G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	371
Acc16I	TGCGCA	1 cut(s)	456
Acc36I	ACCTGC	3 cut(s)	53, 196, 371
AciI	CCGC	1 cut(s)	524
AclWI	GGATC	2 cut(s)	541, 755
AcuI	CTGAAG	2 cut(s)	356, 744
AfaI	GTAC	2 cut(s)	414, 530
AflII	CTTAAG	1 cut(s)	782
AflIII	ACRYGT	1 cut(s)	717
AgsI	TTSAA	2 cut(s)	238, 511
AluBI	AGCT	4 cut(s)	137, 167, 368, 787
AluI	AGCT	4 cut(s)	137, 167, 368, 787
Alw26I	GTCTC	2 cut(s)	78, 785
AlwI	GGATC	2 cut(s)	541, 755
AlwNI	CAGNNNCTG	1 cut(s)	479
ApeKI	GCWGC	4 cut(s)	146, 167, 398, 614
AspLEI	GCGC	2 cut(s)	146, 457
AxyI	CCTNAGG	1 cut(s)	639
BbvI	GCAGC	4 cut(s)	133, 154, 385, 626
BccI	CCATC	1 cut(s)	723
BcoDI	GTCTC	2 cut(s)	78, 785
BfaI	CTAG	2 cut(s)	611, 788
BfmI	CTRYAG	1 cut(s)	378
BfoI	RGCGCY	1 cut(s)	147
BfrI	CTTAAG	1 cut(s)	782
BfuAI	ACCTGC	3 cut(s)	53, 196, 371
BglII	AGATCT	1 cut(s)	625
BisI	GCNGC	4 cut(s)	147, 168, 399, 615
BlsI	GCNGC	4 cut(s)	148, 169, 400, 616
BmiI	GGNNCC	1 cut(s)	63
BmsI	GCATC	4 cut(s)	435, 466, 553, 588
BsaWI	WCCGGW	1 cut(s)	31
Bse118I	RCCGGY	1 cut(s)	283
Bse21I	CCTNAGG	1 cut(s)	639
BseGI	GGATG	4 cut(s)	25, 40, 450, 734
BseMII	CTCAG	2 cut(s)	370, 630
BseRI	GAGGAG	1 cut(s)	765
BseXI	GCAGC	4 cut(s)	133, 154, 385, 626
BsiSI	CCGG	3 cut(s)	32, 219, 284
BsmAI	GTCTC	2 cut(s)	78, 785
Bsp143I	GATC	3 cut(s)	533, 625, 760
BspACI	CCGC	1 cut(s)	524
BspCNI	CTCAG	2 cut(s)	369, 631
BspLI	GGNNCC	1 cut(s)	63
BspMAI	CTGCAG	1 cut(s)	382
BspMI	ACCTGC	3 cut(s)	53, 196, 371
BspPI	GGATC	2 cut(s)	541, 755
BspTI	CTTAAG	1 cut(s)	782
BsrFI	RCCGGY	1 cut(s)	283
BssAI	RCCGGY	1 cut(s)	283
BssMI	GATC	3 cut(s)	533, 625, 760
Bst6I	CTCTTC	1 cut(s)	616
BstAFI	CTTAAG	1 cut(s)	782
BstAPI	GCANNNNNTGC	2 cut(s)	331, 445
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	3 cut(s)	356, 639, 746
BstF5I	GGATG	4 cut(s)	25, 40, 450, 734
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	2 cut(s)	146, 457
BstKTI	GATC	3 cut(s)	536, 628, 763
BstMAI	GTCTC	2 cut(s)	78, 785
BstMBI	GATC	3 cut(s)	533, 625, 760
BstMWI	GCNNNNNNNGC	6 cut(s)	143, 331, 445, 454, 461, 476
BstNSI	RCATGY	1 cut(s)	721
BstSFI	CTRYAG	1 cut(s)	378
BstV1I	GCAGC	4 cut(s)	133, 154, 385, 626
BstX2I	RGATCY	1 cut(s)	625
BstYI	RGATCY	1 cut(s)	625
Bsu36I	CCTNAGG	1 cut(s)	639
BtsCI	GGATG	4 cut(s)	25, 40, 450, 734
BtsIMutI	CAGTG	2 cut(s)	94, 364
BveI	ACCTGC	3 cut(s)	53, 196, 371
Cac8I	GCNNGC	1 cut(s)	6
CaiI	CAGNNNCTG	1 cut(s)	479
CfoI	GCGC	2 cut(s)	146, 457
Cfr10I	RCCGGY	1 cut(s)	283
Csp6I	GTAC	2 cut(s)	413, 529
CviAII	CATG	2 cut(s)	215, 718
CviJI	RGCY	8 cut(s)	64, 137, 167, 260, 287, 368, 683, 787
CviKI_1	RGCY	8 cut(s)	64, 137, 167, 260, 287, 368, 683, 787
CviQI	GTAC	2 cut(s)	413, 529
DdeI	CTNAG	3 cut(s)	356, 639, 746
DpnI	GATC	3 cut(s)	535, 627, 762
DpnII	GATC	3 cut(s)	533, 625, 760
DraI	TTTAAA	1 cut(s)	607
Eam1104I	CTCTTC	1 cut(s)	616
EarI	CTCTTC	1 cut(s)	616
Eco57I	CTGAAG	2 cut(s)	356, 744
Eco81I	CCTNAGG	1 cut(s)	639
FaeI	CATG	2 cut(s)	218, 721
FalI	AAGNNNNNCTT	2 cut(s)	765, 797
FatI	CATG	2 cut(s)	214, 717
FauI	CCCGC	1 cut(s)	517
Fnu4HI	GCNGC	4 cut(s)	147, 168, 399, 615
FokI	GGATG	4 cut(s)	12, 47, 457, 741
Fsp4HI	GCNGC	4 cut(s)	147, 168, 399, 615
FspBI	CTAG	2 cut(s)	611, 788
FspI	TGCGCA	1 cut(s)	456
GlaI	GCGC	2 cut(s)	145, 456
GluI	GCNGC	4 cut(s)	147, 168, 399, 615
HaeII	RGCGCY	1 cut(s)	147
HapII	CCGG	3 cut(s)	32, 219, 284
HhaI	GCGC	2 cut(s)	146, 457
Hin1II	CATG	2 cut(s)	218, 721
Hin6I	GCGC	2 cut(s)	144, 455
HinP1I	GCGC	2 cut(s)	144, 455
HinfI	GANTC	3 cut(s)	71, 742, 793
HpaII	CCGG	3 cut(s)	32, 219, 284
Hpy188I	TCNGA	4 cut(s)	630, 724, 760, 798
Hpy188III	TCNNGA	2 cut(s)	252, 739
HpyAV	CCTTC	2 cut(s)	232, 719
HpyCH4V	TGCA	9 cut(s)	4, 48, 170, 205, 380, 448, 566, 579, 698
HpyF10VI	GCNNNNNNNGC	6 cut(s)	143, 331, 445, 454, 461, 476
HpyF3I	CTNAG	3 cut(s)	356, 639, 746
Hsp92II	CATG	2 cut(s)	218, 721
HspAI	GCGC	2 cut(s)	144, 455
Kzo9I	GATC	3 cut(s)	533, 625, 760
LmnI	GCTCC	1 cut(s)	61
Lsp1109I	GCAGC	4 cut(s)	133, 154, 385, 626
LweI	GCATC	4 cut(s)	435, 466, 553, 588
MaeI	CTAG	2 cut(s)	611, 788
MaeIII	GTNAC	1 cut(s)	339
MalI	GATC	3 cut(s)	535, 627, 762
MboI	GATC	3 cut(s)	533, 625, 760
MboII	GAAGA	2 cut(s)	396, 633
MfeI	CAATTG	1 cut(s)	180
MflI	RGATCY	1 cut(s)	625
MluCI	AATT	6 cut(s)	180, 228, 329, 458, 708, 808
MlyI	GAGTC	2 cut(s)	80, 787
MnlI	CCTC	7 cut(s)	13, 215, 386, 421, 496, 634, 743
MseI	TTAA	2 cut(s)	606, 783
MspCI	CTTAAG	1 cut(s)	782
MspI	CCGG	3 cut(s)	32, 219, 284
MssI	GTTTAAAC	1 cut(s)	607
MunI	CAATTG	1 cut(s)	180
MwoI	GCNNNNNNNGC	6 cut(s)	143, 331, 445, 454, 461, 476
NdeII	GATC	3 cut(s)	533, 625, 760
NlaIII	CATG	2 cut(s)	218, 721
NlaIV	GGNNCC	1 cut(s)	63
NmuCI	GTSAC	1 cut(s)	339
NsbI	TGCGCA	1 cut(s)	456
NspI	RCATGY	1 cut(s)	721
PaqCI	CACCTGC	1 cut(s)	371
PciI	ACATGT	1 cut(s)	717
PfeI	GAWTC	1 cut(s)	742
PkrI	GCNGC	4 cut(s)	148, 169, 400, 616
PleI	GAGTC	2 cut(s)	79, 787
PmeI	GTTTAAAC	1 cut(s)	607
PpsI	GAGTC	2 cut(s)	79, 787
PscI	ACATGT	1 cut(s)	717
PspN4I	GGNNCC	1 cut(s)	63
PstI	CTGCAG	1 cut(s)	382
PstNI	CAGNNNCTG	1 cut(s)	479
PsuI	RGATCY	1 cut(s)	625
RsaI	GTAC	2 cut(s)	414, 530
RsaNI	GTAC	2 cut(s)	413, 529
SaqAI	TTAA	2 cut(s)	606, 783
SatI	GCNGC	4 cut(s)	147, 168, 399, 615
Sau3AI	GATC	3 cut(s)	533, 625, 760
SchI	GAGTC	2 cut(s)	80, 787
SfaNI	GCATC	4 cut(s)	435, 466, 553, 588
SfcI	CTRYAG	1 cut(s)	378
SmlI	CTYRAG	1 cut(s)	782
SmoI	CTYRAG	1 cut(s)	782
Sse9I	AATT	6 cut(s)	180, 228, 329, 458, 708, 808
SsiI	CCGC	1 cut(s)	524
SspMI	CTAG	2 cut(s)	611, 788
TaqI	TCGA	2 cut(s)	102, 199
TasI	AATT	6 cut(s)	180, 228, 329, 458, 708, 808
TfiI	GAWTC	1 cut(s)	742
Tru1I	TTAA	2 cut(s)	606, 783
Tru9I	TTAA	2 cut(s)	606, 783
TscAI	CASTG	2 cut(s)	94, 364
TseFI	GTSAC	1 cut(s)	339
TseI	GCWGC	4 cut(s)	146, 167, 398, 614
Tsp45I	GTSAC	1 cut(s)	339
TspDTI	ATGAA	1 cut(s)	327
TspGWI	ACGGA	1 cut(s)	546
TspRI	CASTG	2 cut(s)	94, 364
Vha464I	CTTAAG	1 cut(s)	782
XceI	RCATGY	1 cut(s)	721
XspI	CTAG	2 cut(s)	611, 788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.