Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0004569

Physical Location & Seq

Genomic Coordinates Reverse (-)

25217348 .. 25219151

Gene Structure 1804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG128700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGAACTTTCTTCCTGCAGACAGGGCTTCTGCTATATTTGTTGGTGTATATGAACCTACGAAGCAGAAATTGCTGAAGTTACTCCCAGAAAATCTCAGTGCTTTAGCTCATTTGACTGCAGGTGCTATTGGAGGTGCTGCTTCTTCTATTGTACGAGTGCCAACAGAGGTTGTCAAGCAAAGGATGCAAACTGCGCAATTTGCTTCTGCCCCAGATGCTGTTCGCCTTATTCTTGCTAAAGAGGGTTTCAAAGGTCTTTATGCGAGGTACGGATCATTCCTATTGCGAGATTTACCATTTGATGCAGTTCAGTTTTGCATCTATGAGCAACTTCACATAGGGTTTAAACTAGCAGCACGAAGAGATCTGAATGACCCTGAGGTTGCTATGATTGGTGCTTTTGCTGGTAACTTTTACATTCCAACTAACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0008150 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

144

Amino Acids

15.76

Weight (kDa)

9.13

Isoelectric Point (pI)

26.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	31 - 112	5.4e-17	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34065 AT1G34065
fragaria_vesca	FvH4_2g12990 FvH4_2g12990 FvH4_2g12990 FvH4_2g12990
malus_domestica	MD05G1033900.v1.1
prunus_persica	Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1
pyrus_communis	pycom05g02450
rosa_chinensis	RchiOBHm_Chr6g0274151
rosa_laevigata	RLG00000013576
rosa_multiflora	Rmu_sc0000939.1_g000009 Rmu_sc0001939.1_g000020 Rmu_sc0002577.1_g000002
rosa_roxburghii	Rroxscaffold_7G00194510
rosa_rugosa	Rorug06G0079400 Rorug06G0079500
rosa_samantha	Rh4CG128700 Rh6AG194700 Rh6CG199100 Rh6CG438900 Rh6DG190600
rosa_wichuraiana	Rw0G007910 Rw5G039420 Rw6G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	110
Acc16I	TGCGCA	1 cut(s)	195
Acc36I	ACCTGC	1 cut(s)	110
AclWI	GGATC	1 cut(s)	280
AcuI	CTGAAG	1 cut(s)	95
AfaI	GTAC	2 cut(s)	153, 269
AgsI	TTSAA	1 cut(s)	250
AluBI	AGCT	1 cut(s)	107
AluI	AGCT	1 cut(s)	107
AlwI	GGATC	1 cut(s)	280
AlwNI	CAGNNNCTG	1 cut(s)	218
ApeKI	GCWGC	2 cut(s)	137, 353
AspLEI	GCGC	1 cut(s)	196
AxyI	CCTNAGG	1 cut(s)	378
BbvI	GCAGC	2 cut(s)	124, 365
BfaI	CTAG	1 cut(s)	350
BfmI	CTRYAG	2 cut(s)	15, 117
BfuAI	ACCTGC	1 cut(s)	110
BglII	AGATCT	1 cut(s)	364
BisI	GCNGC	2 cut(s)	138, 354
BlsI	GCNGC	2 cut(s)	139, 355
BmsI	GCATC	4 cut(s)	174, 205, 292, 327
Bse21I	CCTNAGG	1 cut(s)	378
BseGI	GGATG	1 cut(s)	189
BseMII	CTCAG	2 cut(s)	109, 369
BseXI	GCAGC	2 cut(s)	124, 365
Bsp143I	GATC	2 cut(s)	272, 364
BspCNI	CTCAG	2 cut(s)	108, 370
BspMAI	CTGCAG	2 cut(s)	19, 121
BspMI	ACCTGC	1 cut(s)	110
BspPI	GGATC	1 cut(s)	280
BssMI	GATC	2 cut(s)	272, 364
Bst6I	CTCTTC	1 cut(s)	355
BstAPI	GCANNNNNTGC	2 cut(s)	70, 184
BstDEI	CTNAG	2 cut(s)	95, 378
BstF5I	GGATG	1 cut(s)	189
BstHHI	GCGC	1 cut(s)	196
BstKTI	GATC	2 cut(s)	275, 367
BstMBI	GATC	2 cut(s)	272, 364
BstMWI	GCNNNNNNNGC	6 cut(s)	23, 70, 184, 193, 200, 215
BstSFI	CTRYAG	2 cut(s)	15, 117
BstV1I	GCAGC	2 cut(s)	124, 365
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
Bsu36I	CCTNAGG	1 cut(s)	378
BtsCI	GGATG	1 cut(s)	189
BtsIMutI	CAGTG	1 cut(s)	103
BveI	ACCTGC	1 cut(s)	110
CaiI	CAGNNNCTG	1 cut(s)	218
CfoI	GCGC	1 cut(s)	196
Csp6I	GTAC	2 cut(s)	152, 268
CviJI	RGCY	2 cut(s)	26, 107
CviKI_1	RGCY	2 cut(s)	26, 107
CviQI	GTAC	2 cut(s)	152, 268
DdeI	CTNAG	2 cut(s)	95, 378
DpnI	GATC	2 cut(s)	274, 366
DpnII	GATC	2 cut(s)	272, 364
DraI	TTTAAA	1 cut(s)	346
Eam1104I	CTCTTC	1 cut(s)	355
EarI	CTCTTC	1 cut(s)	355
Eco57I	CTGAAG	1 cut(s)	95
Eco81I	CCTNAGG	1 cut(s)	378
FaiI	YATR	7 cut(s)	35, 49, 51, 261, 324, 338, 389
Fnu4HI	GCNGC	2 cut(s)	138, 354
FokI	GGATG	1 cut(s)	196
Fsp4HI	GCNGC	2 cut(s)	138, 354
FspBI	CTAG	1 cut(s)	350
FspI	TGCGCA	1 cut(s)	195
GlaI	GCGC	1 cut(s)	195
GluI	GCNGC	2 cut(s)	138, 354
HhaI	GCGC	1 cut(s)	196
Hin6I	GCGC	1 cut(s)	194
HinP1I	GCGC	1 cut(s)	194
Hpy188I	TCNGA	1 cut(s)	369
HpyCH4V	TGCA	5 cut(s)	17, 119, 187, 305, 318
HpyF10VI	GCNNNNNNNGC	6 cut(s)	23, 70, 184, 193, 200, 215
HpyF3I	CTNAG	2 cut(s)	95, 378
HspAI	GCGC	1 cut(s)	194
Kzo9I	GATC	2 cut(s)	272, 364
LpnPI	CCDG	7 cut(s)	7, 27, 99, 105, 225, 390, 390
Lsp1109I	GCAGC	2 cut(s)	124, 365
LweI	GCATC	4 cut(s)	174, 205, 292, 327
MaeI	CTAG	1 cut(s)	350
MaeIII	GTNAC	2 cut(s)	78, 407
MalI	GATC	2 cut(s)	274, 366
MboI	GATC	2 cut(s)	272, 364
MboII	GAAGA	2 cut(s)	135, 372
MflI	RGATCY	1 cut(s)	364
MluCI	AATT	2 cut(s)	68, 197
MnlI	CCTC	5 cut(s)	125, 160, 235, 258, 373
MseI	TTAA	1 cut(s)	345
MssI	GTTTAAAC	1 cut(s)	346
MwoI	GCNNNNNNNGC	6 cut(s)	23, 70, 184, 193, 200, 215
NdeII	GATC	2 cut(s)	272, 364
NsbI	TGCGCA	1 cut(s)	195
PaqCI	CACCTGC	1 cut(s)	110
PkrI	GCNGC	2 cut(s)	139, 355
PmeI	GTTTAAAC	1 cut(s)	346
PstI	CTGCAG	2 cut(s)	19, 121
PstNI	CAGNNNCTG	1 cut(s)	218
PsuI	RGATCY	1 cut(s)	364
RsaI	GTAC	2 cut(s)	153, 269
RsaNI	GTAC	2 cut(s)	152, 268
SaqAI	TTAA	1 cut(s)	345
SatI	GCNGC	2 cut(s)	138, 354
Sau3AI	GATC	2 cut(s)	272, 364
SetI	ASST	8 cut(s)	58, 109, 124, 136, 171, 256, 269, 384
SfaNI	GCATC	4 cut(s)	174, 205, 292, 327
SfcI	CTRYAG	2 cut(s)	15, 117
Sse9I	AATT	2 cut(s)	68, 197
SspMI	CTAG	1 cut(s)	350
TasI	AATT	2 cut(s)	68, 197
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TscAI	CASTG	1 cut(s)	103
TseI	GCWGC	2 cut(s)	137, 353
TspDTI	ATGAA	2 cut(s)	17, 66
TspGWI	ACGGA	1 cut(s)	285
TspRI	CASTG	1 cut(s)	103
XspI	CTAG	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.