Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004569

Physical Location & Seq

Genomic Coordinates Reverse (-)

4300170 .. 4307591

Gene Structure 7422 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G041700.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGCAAGCTAAAACTTCTCAGGCACATTCACCGGTTGAAAAAAAATCTGGTTTAGATGTGCTAACCTTGAAGATGAGTAGCTCTCACAAGGACCCAAATGACTGTTTGGCAACAGTCAGTAGTGGAGCAGATACACCATTCGATTTTTTATGCGATTTTTATGATGGAGTCATAGCTGGTGGAGCTGCTGGTGTTTTTGTAGAAGCAGCTTTATACCCAATTGACACAATAAAAACTCGATTACAGGTTGCCCATGCTGGAGGGAAAATTGTGTTAAAGGGTCTATATTCGGGATTGGCTGGAAACCTTGCTGGTGTCTTACCGGCTTCTGCCATATTTGTTGGTGTATATGAACCTACGAAGCAGAAACTGCTGAAGGCATTGCCAGAAAACCTTAGTGCTTTAGCTCATTTGACTGCAGGTGCTATTGCAGGTGCTGCTTCTTCTGTTGTACGAGTTCCAACAGAGGTTGTCAAGCAACGCATGCAAACTGCACAATTTTCTTCAGCCCCAGATGCTGTCCGTCTTATTCTTGCTAAGGAGGGGTTCAAAGGTCTTTACGCGGGGTATGGATCGTTTCTATTGCGAGATTTACCATTTGATGCTGTTCAGTTTTGCATCTACGAGCAGCTTCGAATAGGATTTAAACTAGCGGCACGAAGAGATCTGAATGATCCTGAGGTTGCTATGATTGGTGCTTTTGCTGGTGCAGTAACTGGAGCTATAACTACTCCTCTTGATGTGATTAAGACGAGATTAATGGTTCAGGGATCAGAAAACCAGTACCGAGGAATTTATGATTGTGTTAGGACCATAATGAGAGACGAGGGAAGTCCTGCTCTTTGGAAGGGTATTGGGCCACGAGTCTTGTGGATAGGTATTGGAGGTTCCATTTTCTTTGGTGTTCTTGAAAGGACAAAGCAAATACTTGAGGAAAGGCGTAGGGATCTGGAGTTGAACTCTTCCAAGCGGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0008150 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

326

Amino Acids

34.86

Weight (kDa)

9.06

Isoelectric Point (pI)

35.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34065 AT1G34065
fragaria_vesca	FvH4_2g12990 FvH4_2g12990 FvH4_2g12990 FvH4_2g12990
malus_domestica	MD05G1033900.v1.1
prunus_persica	Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1 Prupe.8G041700_v2.0.a1
pyrus_communis	pycom05g02450
rosa_chinensis	RchiOBHm_Chr6g0274151
rosa_laevigata	RLG00000013576
rosa_multiflora	Rmu_sc0000939.1_g000009 Rmu_sc0001939.1_g000020 Rmu_sc0002577.1_g000002
rosa_roxburghii	Rroxscaffold_7G00194510
rosa_rugosa	Rorug06G0079400 Rorug06G0079500
rosa_samantha	Rh4CG128700 Rh6AG194700 Rh6CG199100 Rh6CG438900 Rh6DG190600
rosa_wichuraiana	Rw0G007910 Rw5G039420 Rw6G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	410, 422
Acc36I	ACCTGC	2 cut(s)	410, 422
AccII	CGCG	1 cut(s)	563
AciI	CCGC	3 cut(s)	563, 653, 970
AclWI	GGATC	4 cut(s)	580, 668, 778, 954
AcsI	RAATTY	1 cut(s)	792
AcuI	CTGAAG	2 cut(s)	395, 489
AfaI	GTAC	2 cut(s)	453, 785
AgeI	ACCGGT	1 cut(s)	31
AgsI	TTSAA	5 cut(s)	38, 70, 550, 911, 958
AluBI	AGCT	8 cut(s)	8, 81, 176, 185, 209, 407, 631, 722
AluI	AGCT	8 cut(s)	8, 81, 176, 185, 209, 407, 631, 722
Alw26I	GTCTC	1 cut(s)	816
AlwI	GGATC	4 cut(s)	580, 668, 778, 954
AlwNI	CAGNNNCTG	4 cut(s)	370, 437, 518, 716
AoxI	GGCC	1 cut(s)	857
ApeKI	GCWGC	4 cut(s)	185, 206, 437, 628
ApoI	RAATTY	1 cut(s)	792
AseI	ATTAAT	1 cut(s)	758
AsiGI	ACCGGT	1 cut(s)	31
AspS9I	GGNCC	3 cut(s)	91, 810, 857
AsuHPI	GGTGA	1 cut(s)	21
AsuII	TTCGAA	1 cut(s)	634
AvaII	GGWCC	2 cut(s)	91, 810
AxyI	CCTNAGG	1 cut(s)	678
BauI	CACGAG	1 cut(s)	861
BbvI	GCAGC	4 cut(s)	172, 218, 424, 640
BccI	CCATC	1 cut(s)	158
BcoDI	GTCTC	1 cut(s)	816
BfaI	CTAG	1 cut(s)	650
BfmI	CTRYAG	1 cut(s)	417
BfuAI	ACCTGC	2 cut(s)	410, 422
BglII	AGATCT	1 cut(s)	664
BisI	GCNGC	5 cut(s)	186, 207, 438, 629, 654
BlsI	GCNGC	5 cut(s)	187, 208, 439, 630, 655
Bme18I	GGWCC	2 cut(s)	91, 810
BmgT120I	GGNCC	3 cut(s)	91, 810, 857
BmiI	GGNNCC	2 cut(s)	93, 889
BmsI	GCATC	3 cut(s)	505, 592, 627
BplI	GAGNNNNNCTC	4 cut(s)	67, 99, 944, 976
BpmI	CTGGAG	3 cut(s)	279, 738, 971
Bpu10I	CCTNAGC	1 cut(s)	537
Bpu14I	TTCGAA	1 cut(s)	634
BpuEI	CTTGAG	1 cut(s)	950
BsaJI	CCNNGG	1 cut(s)	787
BsaWI	WCCGGW	1 cut(s)	31
Bse118I	RCCGGY	2 cut(s)	31, 322
Bse1I	ACTGG	2 cut(s)	721, 781
Bse21I	CCTNAGG	1 cut(s)	678
Bse3DI	GCAATG	1 cut(s)	380
BseDI	CCNNGG	1 cut(s)	787
BseMI	GCAATG	1 cut(s)	380
BseMII	CTCAG	2 cut(s)	32, 669
BseNI	ACTGG	2 cut(s)	721, 781
BseRI	GAGGAG	1 cut(s)	723
BseXI	GCAGC	4 cut(s)	172, 218, 424, 640
BsgI	GTGCAG	2 cut(s)	477, 729
Bsh1236I	CGCG	1 cut(s)	563
BshFI	GGCC	1 cut(s)	859
BshTI	ACCGGT	1 cut(s)	31
BsiSI	CCGG	2 cut(s)	32, 323
BsmAI	GTCTC	1 cut(s)	816
BsmBI	CGTCTC	1 cut(s)	816
BsnI	GGCC	1 cut(s)	859
Bsp119I	TTCGAA	1 cut(s)	634
Bsp143I	GATC	5 cut(s)	572, 664, 673, 770, 946
BspACI	CCGC	3 cut(s)	563, 653, 970
BspANI	GGCC	1 cut(s)	859
BspCNI	CTCAG	2 cut(s)	31, 670
BspFNI	CGCG	1 cut(s)	563
BspLI	GGNNCC	2 cut(s)	93, 889
BspMAI	CTGCAG	1 cut(s)	421
BspMI	ACCTGC	2 cut(s)	410, 422
BspPI	GGATC	4 cut(s)	580, 668, 778, 954
BspT104I	TTCGAA	1 cut(s)	634
BsrDI	GCAATG	1 cut(s)	380
BsrFI	RCCGGY	2 cut(s)	31, 322
BsrI	ACTGG	2 cut(s)	721, 781
BssAI	RCCGGY	2 cut(s)	31, 322
BssECI	CCNNGG	1 cut(s)	787
BssMI	GATC	5 cut(s)	572, 664, 673, 770, 946
BssSI	CACGAG	1 cut(s)	861
Bst2BI	CACGAG	1 cut(s)	861
Bst4CI	ACNGT	2 cut(s)	104, 115
Bst6I	CTCTTC	2 cut(s)	655, 967
BstAPI	GCANNNNNTGC	3 cut(s)	370, 437, 484
BstBI	TTCGAA	1 cut(s)	634
BstC8I	GCNNGC	2 cut(s)	6, 485
BstDEI	CTNAG	4 cut(s)	18, 395, 537, 678
BstFNI	CGCG	1 cut(s)	563
BstKTI	GATC	5 cut(s)	575, 667, 676, 773, 949
BstMAI	GTCTC	1 cut(s)	816
BstMBI	GATC	5 cut(s)	572, 664, 673, 770, 946
BstMWI	GCNNNNNNNGC	5 cut(s)	182, 370, 437, 484, 515
BstNSI	RCATGY	1 cut(s)	487
BstSFI	CTRYAG	1 cut(s)	417
BstUI	CGCG	1 cut(s)	563
BstV1I	GCAGC	4 cut(s)	172, 218, 424, 640
BstX2I	RGATCY	2 cut(s)	664, 946
BstYI	RGATCY	2 cut(s)	664, 946
Bsu36I	CCTNAGG	1 cut(s)	678
BsuRI	GGCC	1 cut(s)	859
BveI	ACCTGC	2 cut(s)	410, 422
Cac8I	GCNNGC	2 cut(s)	6, 485
CaiI	CAGNNNCTG	4 cut(s)	370, 437, 518, 716
Cfr10I	RCCGGY	2 cut(s)	31, 322
Cfr13I	GGNCC	3 cut(s)	91, 810, 857
Csp6I	GTAC	2 cut(s)	452, 784
CspAI	ACCGGT	1 cut(s)	31
CspCI	CAANNNNNGTGG	2 cut(s)	849, 884
CviAII	CATG	2 cut(s)	254, 484
CviQI	GTAC	2 cut(s)	452, 784
DdeI	CTNAG	4 cut(s)	18, 395, 537, 678
DpnI	GATC	5 cut(s)	574, 666, 675, 772, 948
DpnII	GATC	5 cut(s)	572, 664, 673, 770, 946
DraI	TTTAAA	1 cut(s)	646
Eam1104I	CTCTTC	2 cut(s)	655, 967
EarI	CTCTTC	2 cut(s)	655, 967
Eco47I	GGWCC	2 cut(s)	91, 810
Eco57I	CTGAAG	2 cut(s)	395, 489
Eco81I	CCTNAGG	1 cut(s)	678
EcoO109I	RGGNCCY	1 cut(s)	91
Esp3I	CGTCTC	1 cut(s)	816
FaeI	CATG	2 cut(s)	257, 487
FatI	CATG	2 cut(s)	253, 483
FauI	CCCGC	1 cut(s)	556
Fnu4HI	GCNGC	5 cut(s)	186, 207, 438, 629, 654
Fsp4HI	GCNGC	5 cut(s)	186, 207, 438, 629, 654
FspBI	CTAG	1 cut(s)	650
GluI	GCNGC	5 cut(s)	186, 207, 438, 629, 654
GsuI	CTGGAG	3 cut(s)	279, 738, 971
HaeIII	GGCC	1 cut(s)	859
HapII	CCGG	2 cut(s)	32, 323
Hin1II	CATG	2 cut(s)	257, 487
HinfI	GANTC	2 cut(s)	168, 864
HpaII	CCGG	2 cut(s)	32, 323
HphI	GGTGA	1 cut(s)	21
Hpy188I	TCNGA	2 cut(s)	669, 775
Hpy188III	TCNNGA	5 cut(s)	291, 677, 737, 908, 950
HpyAV	CCTTC	2 cut(s)	370, 841
HpyCH4III	ACNGT	2 cut(s)	104, 115
HpyCH4V	TGCA	7 cut(s)	4, 419, 431, 487, 494, 618, 710
HpyF10VI	GCNNNNNNNGC	5 cut(s)	182, 370, 437, 484, 515
HpyF3I	CTNAG	4 cut(s)	18, 395, 537, 678
Hsp92II	CATG	2 cut(s)	257, 487
Kzo9I	GATC	5 cut(s)	572, 664, 673, 770, 946
LmnI	GCTCC	3 cut(s)	125, 182, 719
Lsp1109I	GCAGC	4 cut(s)	172, 218, 424, 640
LweI	GCATC	3 cut(s)	505, 592, 627
MaeI	CTAG	1 cut(s)	650
MaeIII	GTNAC	1 cut(s)	712
MalI	GATC	5 cut(s)	574, 666, 675, 772, 948
MboI	GATC	5 cut(s)	572, 664, 673, 770, 946
MboII	GAAGA	5 cut(s)	82, 435, 495, 672, 954
MfeI	CAATTG	1 cut(s)	219
MflI	RGATCY	2 cut(s)	664, 946
MluCI	AATT	4 cut(s)	219, 267, 497, 792
MlyI	GAGTC	2 cut(s)	177, 873
MmeI	TCCRAC	1 cut(s)	485
MnlI	CCTC	9 cut(s)	254, 460, 535, 673, 744, 782, 820, 878, 925
MseI	TTAA	4 cut(s)	275, 645, 747, 758
MspI	CCGG	2 cut(s)	32, 323
MunI	CAATTG	1 cut(s)	219
MvnI	CGCG	1 cut(s)	563
MwoI	GCNNNNNNNGC	5 cut(s)	182, 370, 437, 484, 515
NdeII	GATC	5 cut(s)	572, 664, 673, 770, 946
NlaIII	CATG	2 cut(s)	257, 487
NlaIV	GGNNCC	2 cut(s)	93, 889
NspI	RCATGY	1 cut(s)	487
NspV	TTCGAA	1 cut(s)	634
PaeI	GCATGC	1 cut(s)	487
PaqCI	CACCTGC	2 cut(s)	410, 422
PinAI	ACCGGT	1 cut(s)	31
PkrI	GCNGC	5 cut(s)	187, 208, 439, 630, 655
PleI	GAGTC	2 cut(s)	176, 872
PpsI	GAGTC	2 cut(s)	176, 872
PpuMI	RGGWCCY	1 cut(s)	91
PshBI	ATTAAT	1 cut(s)	758
Psp5II	RGGWCCY	1 cut(s)	91
PspN4I	GGNNCC	2 cut(s)	93, 889
PspPI	GGNCC	3 cut(s)	91, 810, 857
PspPPI	RGGWCCY	1 cut(s)	91
PsrI	GAACNNNNNNTAC	2 cut(s)	871, 903
PstI	CTGCAG	1 cut(s)	421
PstNI	CAGNNNCTG	4 cut(s)	370, 437, 518, 716
PsuI	RGATCY	2 cut(s)	664, 946
RsaI	GTAC	2 cut(s)	453, 785
RsaNI	GTAC	2 cut(s)	452, 784
SaqAI	TTAA	4 cut(s)	275, 645, 747, 758
SatI	GCNGC	5 cut(s)	186, 207, 438, 629, 654
Sau3AI	GATC	5 cut(s)	572, 664, 673, 770, 946
Sau96I	GGNCC	3 cut(s)	91, 810, 857
SchI	GAGTC	2 cut(s)	177, 873
SfaNI	GCATC	3 cut(s)	505, 592, 627
SfcI	CTRYAG	1 cut(s)	417
SfuI	TTCGAA	1 cut(s)	634
SinI	GGWCC	2 cut(s)	91, 810
SmlI	CTYRAG	1 cut(s)	929
SmoI	CTYRAG	1 cut(s)	929
SphI	GCATGC	1 cut(s)	487
Sse9I	AATT	4 cut(s)	219, 267, 497, 792
SsiI	CCGC	3 cut(s)	563, 653, 970
SspMI	CTAG	1 cut(s)	650
TaaI	ACNGT	2 cut(s)	104, 115
TaqI	TCGA	3 cut(s)	141, 238, 634
TasI	AATT	4 cut(s)	219, 267, 497, 792
TauI	GCSGC	1 cut(s)	656
Tru1I	TTAA	4 cut(s)	275, 645, 747, 758
Tru9I	TTAA	4 cut(s)	275, 645, 747, 758
TseI	GCWGC	4 cut(s)	185, 206, 437, 628
TspDTI	ATGAA	1 cut(s)	366
TspGWI	ACGGA	1 cut(s)	512
VpaK11BI	GGWCC	2 cut(s)	91, 810
VspI	ATTAAT	1 cut(s)	758
XapI	RAATTY	1 cut(s)	792
XceI	RCATGY	1 cut(s)	487
XcmI	CCANNNNNNNNNTGG	1 cut(s)	867
XspI	CTAG	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.