Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0009217

Physical Location & Seq

Genomic Coordinates Forward (+)

13071862 .. 13079360

Gene Structure 7499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g14890.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2736 bp

ATGGTACCTTCGGGGCCGCCCAATCCGATTGGTGGTGCCCAGTCTGTTACGCCTTCGCTTTTGCGTTCAAATTCCGGAATGCTTGGAGGTCAAAATGGTCCACTGCCTTCTCAGTCTGCTTTTCCTTCACTTGTCTCACCGCGTAATCAATTCGGTAACATGAATATGCTTGGAAATGTAGCCAATGTGTCGTCTCTCCTTAATCAGTCTTTTGGAAATGGGATTCCGAATTCAGGGCTTTCTGGTCCTGGTAGCAGCCATCGCGGAGGTATTGATACTGGGGCTGAGTCTGATCCACTTTCCAGTGTTGGCAATGGAATGGGTTTTAATGCTCCGTCATCTTATAATGCATCAAATTTGGCTAATCCTGGTACATCTGGTCAAGGTCAGGGCCAGGGTCAACAATTTTCAAACCCTTCTGGTAATCAACTGTTGGGAGATCAACAACAGCAACAACTTGAGAATCAGAATTTTCAGCATAGTCAGCAGCAAATGCAACAGTTCTCTGCCTCTCACAATACACAGCAGCAGCAACAGCAATTTCAGGCGATTAGAGGGGGCTTAGCTGGTGTTGGACCGGTCAAGTTGGAGCCCCAGTTGACAAATGATCAACATGGACAGCAGCAGCAGTTGCAGTCTATGAGAAGTCTTGGTCCAGTAAAATTGGAACCTCAACAACTTCAGACCATGAGAAGCTTGCCGCCTGTAAAATTGGAACCCCAGCATAGTGATCAGTCATTGTATTTGCATCAACAACAACAGCAACAACAGCAGCAGCAGCAACAACAACAGCAGTTACTCAACATGTCAAGGCACTCTTCTCAAGCTACAGCCGCCGCCCATATAAACCTTCTGCATCAACAGAGATTTTTGCAGCTACAACAACAGCACCAGCAACAGCAACTCTTAAAAGCTATGCCTCAGCAACGGCCCCAAGTACAGCAGCAATTTCCACAACAGAATCTCCCTATGAGATCCCCTGCGAAACCAGTGTATGAACCTGGAATGTGTGCACGGCGCTTGACGCATTATATGTATCAGCAACAACATAGGCCTGAAGACAACAATATTGAATTCTGGAGAAAATTTGTTGCCGAGTATTTTGTACCTCATGCCAAGAAGAAGTGGTGTGTTTCTATGTATGGAAGTGGCCGGCAGACAACTGGTGTTTTCCCTCAGGATGTATGGCATTGTGAGATATGCAATCGCAAGCCTGGACGGGGCTTTGAAGCAACTGTTGAGGTTCTTCCTCGACTTTTTAAAATTAAGTATGAAAGTGGTACCTTGGAGGAACTTCTGTATGTTGATATGCCTCGGGAGTATCATAATTCATCTGGTCAGATTGTGCTGGACTATGCCAAAGCAATACAAGAAAGTGTTTTTGAGCAGCTTCGTGTTGTTCGGGATGGTCAACTTCGAATTGTGTTCTCTCCAGATTTGAAGATCTGCTCTTGGGAGTTCTGTGCAAGGCGCCATGAAGAGCTTATCCCTCGAAGATTACTGATACCTCAGGTTAGTCAACTTGGGGCTGCAGCTCAAAAGTACCAGGCTGCTACTCAAAATGCATCATCAAATTTATCTATTCCAGACATACAAAATAATTGTAATATGTTTGTATCGTCAGCTCGGCAGTTGGCAAAAACCCTGGAAGTGCCATTAGTAAATGATTTAGGCTATACAAAGAGATATGTAAGGTGTCTACAGATATCAGAAGTGGTTAATAGTATGAAGGACTTGATCGATTACAGCCGAGAGACGGGGACTGGACCTATGGAGAGCTTAGCCAAGTTTCCTCGAAGGACTAGTGCTTCATCTGGGTTTCACAATCAAGCACAGCAGTCTGATGAACAAATGCAGCAGCAGCAGCAGCAACAGCAAACAGTGGGCCAGAATTCAAATGACGCAAGCTCTGTCCAGGCCAATATGCAACTTGCTGGTAGTAATGGACCAAGTGGTATGGCTAGTGTAAATAATGTGAACACAGCATCCACATCTACCTCAGCAAGCACCATTGTGGGTCTACTGCATCAAAATTCCATGAATTCCAGGCAACAAAGTTCAATGAATAATGCAAACAGTCCCTATGGAGGAAGTTCTGTTCAGATTCCACCATCCCCTGGTTCTTCTAGTACAATCCCTCAGACACAAGCAAACCCTTCTCCATTCCAGTCACCAACACCCTCATCGAACAATCCATCACAAACATCTCATGGTGCCTTGACAGCTACCAATCACATGAGTGCAGCAAATTCACCAGCAAATGTATCCATGCAACAGCCAGCCCTTTCTGGTGAGGCTGATCCAAGTGATTCCCAGAGCTCTGTCCAGAAGATAATACATGACATGATGATGTCCAACCAGCTTAATGGCTCAGGTAGTATGGTTGGTGTGGGTTCTCTGGGAAACGATGTGAAAAACATTAATGGGATTTTGTCTAGTACCAACAACCCAGGTATGAACGGTCTATCGGGGAATGGCATGGGCAACAGTAACTCAAGTATGGGGGGTGGTGGATTTGGAAGTATGGGTGGACTTGGTCAGCCTGCCATGGTTAATGGAATAAGATCTACAATGGGAAATAATTCTGTTATGAACGGGAGGGTTGGAATGGCATCAATGGCTCGAGAACAAAGTATGCATCATCAACAGGATATTGGGAGCCAGCTACTTAGTGGGCTTGGAGCCGTTAATGGGTATAACAATAACCTTCAATTTGATTGGAAACATTCCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0010243 GO:0010272 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0035670 GO:0036293 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0046898 GO:0046982 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060090 GO:0060992 GO:0061458 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901363 GO:1901654 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM_bind

Protein Analysis

912

Amino Acids

98.87

Weight (kDa)

8.86

Isoelectric Point (pI)

58.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM_bind	PF01803	340 - 594	1.2e-67	LIM-domain binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43850 AT1G43850
fragaria_vesca	FvH4_2g14890
malus_domestica	MD05G1012000.v1.1 MD10G1012000.v1.1
prunus_persica	Prupe.8G017000_v2.0.a1 Prupe.8G017000_v2.0.a1 Prupe.8G017000_v2.0.a1
pyrus_communis	pycom05g00700 pycom10g00760
rosa_chinensis	RchiOBHm_Chr6g0277461
rosa_laevigata	RLG00000013299
rosa_multiflora	Rmu_co8465657.1_g000001 Rmu_sc0003910.1_g000012
rosa_roxburghii	Rroxscaffold_7G00191290
rosa_rugosa	Rorug06G0108400 Rorug06G0108500
rosa_samantha	Rh6AG219300 Rh6BG223200 Rh6CG225700 Rh6DG216000
rosa_wichuraiana	Rw6G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	345
Acc65I	GGTACC	2 cut(s)	4, 1280
AccB1I	GGYRCC	5 cut(s)	4, 35, 1280, 1470, 2213
AccB7I	CCANNNNNTGG	1 cut(s)	2117
AccI	GTMKAC	2 cut(s)	1699, 2020
AccII	CGCG	2 cut(s)	142, 264
AccIII	TCCGGA	1 cut(s)	74
AciI	CCGC	6 cut(s)	17, 140, 264, 701, 834, 837
AclWI	GGATC	3 cut(s)	287, 969, 2294
AcoI	YGGCCR	1 cut(s)	1150
AcuI	CTGAAG	2 cut(s)	665, 1077
AcyI	GRCGYC	1 cut(s)	1471
AfaI	GTAC	8 cut(s)	6, 373, 939, 1107, 1282, 1544, 2131, 2440
AfiI	CCNNNNNNNGG	7 cut(s)	32, 233, 1220, 1756, 2087, 2117, 2691
AflIII	ACRYGT	1 cut(s)	804
AgeI	ACCGGT	1 cut(s)	577
AgsI	TTSAA	8 cut(s)	69, 411, 1073, 1229, 1441, 1896, 2061, 2711
AhlI	ACTAGT	1 cut(s)	1802
AleI	CACNNNNGTG	2 cut(s)	2012, 2238
AloI	GAACNNNNNNTCC	4 cut(s)	1970, 2002, 2082, 2114
Alw21I	GWGCWC	2 cut(s)	1015, 2321
Alw26I	GTCTC	3 cut(s)	139, 198, 1748
Alw44I	GTGCAC	1 cut(s)	1011
AlwI	GGATC	3 cut(s)	287, 969, 2294
Ama87I	CYCGRG	2 cut(s)	1314, 2622
Aor13HI	TCCGGA	1 cut(s)	74
AoxI	GGCC	7 cut(s)	14, 391, 929, 1052, 1150, 1885, 1917
ApaLI	GTGCAC	1 cut(s)	1011
AseI	ATTAAT	1 cut(s)	2421
AsiGI	ACCGGT	1 cut(s)	577
Asp700I	GAANNNNTTC	1 cut(s)	2581
Asp718I	GGTACC	2 cut(s)	4, 1280
AspLEI	GCGC	2 cut(s)	1020, 1473
AsuHPI	GGTGA	4 cut(s)	129, 2163, 2244, 2303
AsuII	TTCGAA	1 cut(s)	1417
AvaI	CYCGRG	2 cut(s)	1314, 2622
AvaII	GGWCC	6 cut(s)	98, 245, 575, 653, 1766, 1946
AxyI	CCTNAGG	2 cut(s)	1176, 1509
BaeGI	GKGCMC	2 cut(s)	40, 1015
BanI	GGYRCC	5 cut(s)	4, 35, 1280, 1470, 2213
BanII	GRGCYC	2 cut(s)	594, 2321
BbsI	GAAGAC	1 cut(s)	1065
Bbv12I	GWGCWC	2 cut(s)	1015, 2321
BbvCI	CCTCAGC	2 cut(s)	921, 1999
BccI	CCATC	4 cut(s)	267, 1400, 2119, 2203
BceAI	ACGGC	3 cut(s)	944, 1031, 2669
BciVI	GTATCC	1 cut(s)	2275
BclI	TGATCA	2 cut(s)	607, 730
BcoDI	GTCTC	3 cut(s)	139, 198, 1748
BcuI	ACTAGT	1 cut(s)	1802
BfaI	CTAG	4 cut(s)	1803, 1962, 2127, 2436
BfmI	CTRYAG	3 cut(s)	828, 1530, 1700
BfoI	RGCGCY	2 cut(s)	1021, 1474
BfuI	GTATCC	1 cut(s)	2275
BglII	AGATCT	2 cut(s)	1443, 2564
BlpI	GCTNAGC	2 cut(s)	562, 1780
Bme18I	GGWCC	6 cut(s)	98, 245, 575, 653, 1766, 1946
BmeT110I	CYCGRG	2 cut(s)	1314, 2622
BmrI	ACTGGG	3 cut(s)	34, 288, 589
BmsI	GCATC	8 cut(s)	359, 757, 865, 1574, 1994, 2035, 2621, 2647
BmuI	ACTGGG	3 cut(s)	34, 288, 589
BpiI	GAAGAC	1 cut(s)	1065
BpmI	CTGGAG	2 cut(s)	1099, 1416
Bpu10I	CCTNAGC	3 cut(s)	921, 1999, 2371
Bpu1102I	GCTNAGC	2 cut(s)	562, 1780
Bpu14I	TTCGAA	1 cut(s)	1417
BpuEI	CTTGAG	3 cut(s)	479, 807, 2479
Bsa29I	ATCGAT	1 cut(s)	1740
BsaHI	GRCGYC	1 cut(s)	1471
BsaJI	CCNNGG	7 cut(s)	394, 1284, 1313, 1644, 2116, 2449, 2547
BsaWI	WCCGGW	2 cut(s)	74, 577
BsaXI	ACNNNNNCTCC	4 cut(s)	581, 611, 948, 978
Bsc4I	CCNNNNNNNGG	7 cut(s)	32, 233, 1220, 1756, 2087, 2117, 2691
Bse118I	RCCGGY	2 cut(s)	577, 1152
Bse1I	ACTGG	9 cut(s)	40, 283, 303, 595, 656, 989, 1168, 1768, 2167
Bse21I	CCTNAGG	2 cut(s)	1176, 1509
Bse3DI	GCAATG	1 cut(s)	319
BseAI	TCCGGA	1 cut(s)	74
BseCI	ATCGAT	1 cut(s)	1740
BseDI	CCNNGG	7 cut(s)	394, 1284, 1313, 1644, 2116, 2449, 2547
BseGI	GGATG	4 cut(s)	1186, 1411, 1985, 2111
BseLI	CCNNNNNNNGG	7 cut(s)	32, 233, 1220, 1756, 2087, 2117, 2691
BseMI	GCAATG	1 cut(s)	319
BseMII	CTCAG	8 cut(s)	125, 276, 935, 1190, 1523, 2013, 2153, 2385
BseNI	ACTGG	9 cut(s)	40, 283, 303, 595, 656, 989, 1168, 1768, 2167
BseSI	GKGCMC	2 cut(s)	40, 1015
BseYI	CCCAGC	1 cut(s)	720
BsgI	GTGCAG	1 cut(s)	2262
Bsh1236I	CGCG	2 cut(s)	142, 264
BshFI	GGCC	7 cut(s)	16, 393, 931, 1054, 1152, 1887, 1919
BshNI	GGYRCC	5 cut(s)	4, 35, 1280, 1470, 2213
BshTI	ACCGGT	1 cut(s)	577
BshVI	ATCGAT	1 cut(s)	1740
BsiHKAI	GWGCWC	2 cut(s)	1015, 2321
BsiHKCI	CYCGRG	2 cut(s)	1314, 2622
BsiSI	CCGG	3 cut(s)	75, 578, 1153
BslFI	GGGAC	2 cut(s)	1774, 2064
BslI	CCNNNNNNNGG	7 cut(s)	32, 233, 1220, 1756, 2087, 2117, 2691
BsmAI	GTCTC	3 cut(s)	139, 198, 1748
BsmBI	CGTCTC	2 cut(s)	198, 1748
BsmFI	GGGAC	2 cut(s)	1774, 2064
BsmI	GAATGC	1 cut(s)	84
BsnI	GGCC	7 cut(s)	16, 393, 931, 1054, 1152, 1887, 1919
BsoBI	CYCGRG	2 cut(s)	1314, 2622
Bsp119I	TTCGAA	1 cut(s)	1417
Bsp1286I	GDGCHC	4 cut(s)	40, 594, 1015, 2321
Bsp13I	TCCGGA	1 cut(s)	74
Bsp143I	GATC	9 cut(s)	292, 439, 607, 730, 974, 1443, 1737, 2299, 2564
Bsp1720I	GCTNAGC	2 cut(s)	562, 1780
Bsp19I	CCATGG	1 cut(s)	2547
BspACI	CCGC	6 cut(s)	17, 140, 264, 701, 834, 837
BspANI	GGCC	7 cut(s)	16, 393, 931, 1054, 1152, 1887, 1919
BspCNI	CTCAG	8 cut(s)	124, 277, 934, 1189, 1522, 2012, 2152, 2384
BspDI	ATCGAT	1 cut(s)	1740
BspEI	TCCGGA	1 cut(s)	74
BspFNI	CGCG	2 cut(s)	142, 264
BspMAI	CTGCAG	1 cut(s)	1534
BspPI	GGATC	3 cut(s)	287, 969, 2294
BspQI	GCTCTTC	1 cut(s)	1473
BspT104I	TTCGAA	1 cut(s)	1417
BspT107I	GGYRCC	5 cut(s)	4, 35, 1280, 1470, 2213
BsrDI	GCAATG	1 cut(s)	319
BsrFI	RCCGGY	2 cut(s)	577, 1152
BsrI	ACTGG	9 cut(s)	40, 283, 303, 595, 656, 989, 1168, 1768, 2167
BssAI	RCCGGY	2 cut(s)	577, 1152
BssECI	CCNNGG	7 cut(s)	394, 1284, 1313, 1644, 2116, 2449, 2547
BssMI	GATC	9 cut(s)	292, 439, 607, 730, 974, 1443, 1737, 2299, 2564
BssNI	GRCGYC	1 cut(s)	1471
BssT1I	CCWWGG	2 cut(s)	1284, 2547
Bst4CI	ACNGT	7 cut(s)	432, 501, 1237, 1882, 2078, 2462, 2489
Bst6I	CTCTTC	2 cut(s)	823, 1473
BstACI	GRCGYC	1 cut(s)	1471
BstAPI	GCANNNNNTGC	2 cut(s)	493, 631
BstBI	TTCGAA	1 cut(s)	1417
BstC8I	GCNNGC	8 cut(s)	698, 1154, 1211, 1906, 2005, 2280, 2544, 2663
BstDSI	CCRYGG	1 cut(s)	2547
BstF5I	GGATG	4 cut(s)	1186, 1411, 1985, 2111
BstFNI	CGCG	2 cut(s)	142, 264
BstH2I	RGCGCY	2 cut(s)	1021, 1474
BstHHI	GCGC	2 cut(s)	1020, 1473
BstKTI	GATC	9 cut(s)	295, 442, 610, 733, 977, 1446, 1740, 2302, 2567
BstMAI	GTCTC	3 cut(s)	139, 198, 1748
BstMBI	GATC	9 cut(s)	292, 439, 607, 730, 974, 1443, 1737, 2299, 2564
BstNSI	RCATGY	1 cut(s)	808
BstSFI	CTRYAG	3 cut(s)	828, 1530, 1700
BstSLI	GKGCMC	2 cut(s)	40, 1015
BstUI	CGCG	2 cut(s)	142, 264
BstV2I	GAAGAC	1 cut(s)	1065
BstX2I	RGATCY	3 cut(s)	974, 1443, 2564
BstXI	CCANNNNNNTGG	1 cut(s)	2366
BstYI	RGATCY	3 cut(s)	974, 1443, 2564
Bsu15I	ATCGAT	1 cut(s)	1740
Bsu36I	CCTNAGG	2 cut(s)	1176, 1509
BsuI	GTATCC	1 cut(s)	2275
BsuRI	GGCC	7 cut(s)	16, 393, 931, 1054, 1152, 1887, 1919
BsuTUI	ATCGAT	1 cut(s)	1740
BtgI	CCRYGG	1 cut(s)	2547
BtgZI	GCGATG	1 cut(s)	245
BtsCI	GGATG	4 cut(s)	1186, 1411, 1985, 2111
BtsI	GCAGTG	1 cut(s)	101
BtsIMutI	CAGTG	4 cut(s)	101, 310, 996, 1887
Cac8I	GCNNGC	8 cut(s)	698, 1154, 1211, 1906, 2005, 2280, 2544, 2663
CfoI	GCGC	2 cut(s)	1020, 1473
Cfr10I	RCCGGY	2 cut(s)	577, 1152
ClaI	ATCGAT	1 cut(s)	1740
CseI	GACGC	2 cut(s)	1033, 1910
Csp6I	GTAC	8 cut(s)	5, 372, 938, 1106, 1281, 1543, 2130, 2439
CspAI	ACCGGT	1 cut(s)	577
CviQI	GTAC	8 cut(s)	5, 372, 938, 1106, 1281, 1543, 2130, 2439
DinI	GGCGCC	1 cut(s)	1472
DpnI	GATC	9 cut(s)	294, 441, 609, 732, 976, 1445, 1739, 2301, 2566
DpnII	GATC	9 cut(s)	292, 439, 607, 730, 974, 1443, 1737, 2299, 2564
DraI	TTTAAA	1 cut(s)	1261
EaeI	YGGCCR	1 cut(s)	1150
Eam1104I	CTCTTC	2 cut(s)	823, 1473
EarI	CTCTTC	2 cut(s)	823, 1473
Ecl136II	GAGCTC	1 cut(s)	2319
Eco130I	CCWWGG	2 cut(s)	1284, 2547
Eco147I	AGGCCT	1 cut(s)	1054
Eco24I	GRGCYC	2 cut(s)	594, 2321
Eco32I	GATATC	1 cut(s)	1707
Eco47I	GGWCC	6 cut(s)	98, 245, 575, 653, 1766, 1946
Eco53kI	GAGCTC	1 cut(s)	2319
Eco57I	CTGAAG	2 cut(s)	665, 1077
Eco81I	CCTNAGG	2 cut(s)	1176, 1509
Eco88I	CYCGRG	2 cut(s)	1314, 2622
EcoICRI	GAGCTC	1 cut(s)	2319
EcoRI	GAATTC	4 cut(s)	229, 1073, 1891, 2041
EcoRV	GATATC	1 cut(s)	1707
EcoT14I	CCWWGG	2 cut(s)	1284, 2547
EcoT22I	ATGCAT	3 cut(s)	352, 1567, 2640
EcoT38I	GRGCYC	2 cut(s)	594, 2321
EgeI	GGCGCC	1 cut(s)	1472
EheI	GGCGCC	1 cut(s)	1472
ErhI	CCWWGG	2 cut(s)	1284, 2547
Esp3I	CGTCTC	2 cut(s)	198, 1748
FalI	AAGNNNNNCTT	2 cut(s)	802, 834
FaqI	GGGAC	2 cut(s)	1774, 2064
FbaI	TGATCA	2 cut(s)	607, 730
FblI	GTMKAC	2 cut(s)	1699, 2020
FokI	GGATG	4 cut(s)	1193, 1418, 1972, 2098
FriOI	GRGCYC	2 cut(s)	594, 2321
FspBI	CTAG	4 cut(s)	1803, 1962, 2127, 2436
GlaI	GCGC	2 cut(s)	1019, 1472
GsaI	CCCAGC	1 cut(s)	724
GsuI	CTGGAG	2 cut(s)	1099, 1416
HaeII	RGCGCY	2 cut(s)	1021, 1474
HaeIII	GGCC	7 cut(s)	16, 393, 931, 1054, 1152, 1887, 1919
HapII	CCGG	3 cut(s)	75, 578, 1153
HgaI	GACGC	2 cut(s)	1033, 1910
HhaI	GCGC	2 cut(s)	1020, 1473
Hin1I	GRCGYC	1 cut(s)	1471
Hin6I	GCGC	2 cut(s)	1018, 1471
HinP1I	GCGC	2 cut(s)	1018, 1471
HincII	GTYRAC	4 cut(s)	401, 600, 1412, 1520
HindII	GTYRAC	4 cut(s)	401, 600, 1412, 1520
HindIII	AAGCTT	1 cut(s)	694
HinfI	GANTC	6 cut(s)	223, 287, 463, 961, 2104, 2309
HpaII	CCGG	3 cut(s)	75, 578, 1153
HphI	GGTGA	4 cut(s)	129, 2163, 2244, 2303
Hpy188III	TCNNGA	9 cut(s)	75, 1078, 1178, 1316, 1403, 1433, 1586, 2326, 2624
HpyCH4III	ACNGT	7 cut(s)	432, 501, 1237, 1882, 2078, 2462, 2489
Hsp92I	GRCGYC	1 cut(s)	1471
HspAI	GCGC	2 cut(s)	1018, 1471
KasI	GGCGCC	1 cut(s)	1470
Kpn2I	TCCGGA	1 cut(s)	74
KpnI	GGTACC	2 cut(s)	8, 1284
KroI	GCCGGC	1 cut(s)	1152
KroNI	GCCGGC	1 cut(s)	1154
Ksp22I	TGATCA	2 cut(s)	607, 730
Kzo9I	GATC	9 cut(s)	292, 439, 607, 730, 974, 1443, 1737, 2299, 2564
LguI	GCTCTTC	1 cut(s)	1473
LmnI	GCTCC	4 cut(s)	337, 589, 2658, 2681
LweI	GCATC	8 cut(s)	359, 757, 865, 1574, 1994, 2035, 2621, 2647
MaeI	CTAG	4 cut(s)	1803, 1962, 2127, 2436
MaeIII	GTNAC	5 cut(s)	46, 155, 795, 2169, 2489
MalI	GATC	9 cut(s)	294, 441, 609, 732, 976, 1445, 1739, 2301, 2566
MboI	GATC	9 cut(s)	292, 439, 607, 730, 974, 1443, 1737, 2299, 2564
MboII	GAAGA	9 cut(s)	810, 1070, 1132, 1238, 1453, 1490, 1506, 2115, 2341
MflI	RGATCY	3 cut(s)	974, 1443, 2564
MhlI	GDGCHC	4 cut(s)	40, 594, 1015, 2321
Mly113I	GGCGCC	1 cut(s)	1471
MlyI	GAGTC	1 cut(s)	296
MmeI	TCCRAC	4 cut(s)	553, 567, 2379, 2584
Mph1103I	ATGCAT	3 cut(s)	352, 1567, 2640
MroI	TCCGGA	1 cut(s)	74
MroNI	GCCGGC	1 cut(s)	1152
MroXI	GAANNNNTTC	1 cut(s)	2581
MslI	CAYNNNNRTG	4 cut(s)	164, 2012, 2238, 2348
MspI	CCGG	3 cut(s)	75, 578, 1153
Mva1269I	GAATGC	1 cut(s)	84
MvnI	CGCG	2 cut(s)	142, 264
NaeI	GCCGGC	1 cut(s)	1154
NarI	GGCGCC	1 cut(s)	1471
NcoI	CCATGG	1 cut(s)	2547
NdeII	GATC	9 cut(s)	292, 439, 607, 730, 974, 1443, 1737, 2299, 2564
NgoMIV	GCCGGC	1 cut(s)	1152
NmeAIII	GCCGAG	3 cut(s)	1120, 1606, 1775
NmuCI	GTSAC	1 cut(s)	2169
NsiI	ATGCAT	3 cut(s)	352, 1567, 2640
NspI	RCATGY	1 cut(s)	808
NspV	TTCGAA	1 cut(s)	1417
OliI	CACNNNNGTG	2 cut(s)	2012, 2238
PaeR7I	CTCGAG	1 cut(s)	2622
PceI	AGGCCT	1 cut(s)	1054
PciI	ACATGT	1 cut(s)	804
PciSI	GCTCTTC	1 cut(s)	1473
PctI	GAATGC	1 cut(s)	84
PdiI	GCCGGC	1 cut(s)	1154
PdmI	GAANNNNTTC	1 cut(s)	2581
PfeI	GAWTC	5 cut(s)	223, 463, 961, 2104, 2309
PflFI	GACNNNGTC	1 cut(s)	2535
PflMI	CCANNNNNTGG	1 cut(s)	2117
PinAI	ACCGGT	1 cut(s)	577
PleI	GAGTC	1 cut(s)	295
PluTI	GGCGCC	1 cut(s)	1474
PpsI	GAGTC	1 cut(s)	295
PscI	ACATGT	1 cut(s)	804
PshBI	ATTAAT	1 cut(s)	2421
PsiI	TTATAA	1 cut(s)	345
Psp124BI	GAGCTC	1 cut(s)	2321
PspFI	CCCAGC	1 cut(s)	720
PstI	CTGCAG	1 cut(s)	1534
PsuI	RGATCY	3 cut(s)	974, 1443, 2564
PsyI	GACNNNGTC	1 cut(s)	2535
RsaI	GTAC	8 cut(s)	6, 373, 939, 1107, 1282, 1544, 2131, 2440
RsaNI	GTAC	8 cut(s)	5, 372, 938, 1106, 1281, 1543, 2130, 2439
RseI	CAYNNNNRTG	4 cut(s)	164, 2012, 2238, 2348
SacI	GAGCTC	1 cut(s)	2321
SapI	GCTCTTC	1 cut(s)	1473
Sau3AI	GATC	9 cut(s)	292, 439, 607, 730, 974, 1443, 1737, 2299, 2564
SchI	GAGTC	1 cut(s)	296
SduI	GDGCHC	4 cut(s)	40, 594, 1015, 2321
SfaNI	GCATC	8 cut(s)	359, 757, 865, 1574, 1994, 2035, 2621, 2647
SfcI	CTRYAG	3 cut(s)	828, 1530, 1700
SfoI	GGCGCC	1 cut(s)	1472
Sfr274I	CTCGAG	1 cut(s)	2622
SfuI	TTCGAA	1 cut(s)	1417
SinI	GGWCC	6 cut(s)	98, 245, 575, 653, 1766, 1946
SlaI	CTCGAG	1 cut(s)	2622
SmiMI	CAYNNNNRTG	4 cut(s)	164, 2012, 2238, 2348
SmlI	CTYRAG	4 cut(s)	458, 822, 2494, 2622
SmoI	CTYRAG	4 cut(s)	458, 822, 2494, 2622
SpeI	ACTAGT	1 cut(s)	1802
SseBI	AGGCCT	1 cut(s)	1054
SsiI	CCGC	6 cut(s)	17, 140, 264, 701, 834, 837
SspDI	GGCGCC	1 cut(s)	1470
SspI	AATATT	1 cut(s)	1069
SspMI	CTAG	4 cut(s)	1803, 1962, 2127, 2436
SstI	GAGCTC	1 cut(s)	2321
StuI	AGGCCT	1 cut(s)	1054
StyI	CCWWGG	2 cut(s)	1284, 2547
TaaI	ACNGT	7 cut(s)	432, 501, 1237, 1882, 2078, 2462, 2489
TaqI	TCGA	7 cut(s)	1252, 1417, 1492, 1740, 1795, 2186, 2623
TatI	WGTACW	2 cut(s)	937, 2129
TauI	GCSGC	4 cut(s)	19, 703, 836, 839
TfiI	GAWTC	5 cut(s)	223, 463, 961, 2104, 2309
TscAI	CASTG	4 cut(s)	108, 310, 996, 1887
TseFI	GTSAC	1 cut(s)	2169
Tsp45I	GTSAC	1 cut(s)	2169
TspGWI	ACGGA	1 cut(s)	324
TspRI	CASTG	4 cut(s)	108, 310, 996, 1887
Tth111I	GACNNNGTC	1 cut(s)	2535
Van91I	CCANNNNNTGG	1 cut(s)	2117
VneI	GTGCAC	1 cut(s)	1011
VpaK11BI	GGWCC	6 cut(s)	98, 245, 575, 653, 1766, 1946
VspI	ATTAAT	1 cut(s)	2421
XceI	RCATGY	1 cut(s)	808
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2669
XhoI	CTCGAG	1 cut(s)	2622
XmiI	GTMKAC	2 cut(s)	1699, 2020
XmnI	GAANNNNTTC	1 cut(s)	2581
XspI	CTAG	4 cut(s)	1803, 1962, 2127, 2436
Zsp2I	ATGCAT	3 cut(s)	352, 1567, 2640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.