Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0009217

Physical Location & Seq

Genomic Coordinates Forward (+)

38427019 .. 38433207

Gene Structure 6189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G019200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2670 bp

ATGGTACCTTCGGGGCCGCCCAATCCAATTGGTGGTGCCCAGTCTGTTTCACCTTCGCTCTTGCGTTCAAATTCTGGAATGCTTGGAGGTCAAAATGGTCCACTACCTTCTCAGTCAGCTTTTCCGTCGCTTGTCTCACCGCGTACTCAATTCAGTAACATGAACATGCTTGGAAATGTAGCCAATGTGTCTTCTCTCCTTAATCAGCCTTTTGGAAATGGGATTCCAAATTCAGGGCTTTCTGGTCCTGGTAGCAGCCATCGTGGAGGTATTGATACTGGGGCTGAGTCCGATCCCCTCTCTAGTGTTGGCAATGGAATGGGTTTCAATGCTCCTTCATCTTATAATGCATCAAACCTGGCTAATCCTGGTACATCTGGTCAAGGTCAGGGTCAGGGTCAACAATTTTCAAACCCTTCTGGTAATCAGCTGTTGGCAGATCAACAACAGCAACAACTCGAGAATCAGAATTTTCAGCATAGTCAGCAGCAAATGCAACAGTTCTCTGCCCCTCACAACGCACAGCAGCAGCAGCAACAGCAATTTCAGCCAATTCGAGGGAGCTTAGCTGGTGTTGGACAAGTCAAGTTGGAGCCCCAGTTGACAAATGATCAACATGGACAGCAGCAGCAGCAGTTGCAGTCTTTTAGAGGTCTTGGTCAAGTGAAAATGGAACCTCAACAACTTCAGAACATGAGAAACTTGCCGCCTGTAAAAGTGGAACCCCAGCATAATGATCAGTCATTGTATTTGCATCAACAACAGCAACAGCAACAGCAACAGCAACAGCAACAACAGCAGTTACTCAACATGTCAAGGCACTCTTCTCAAGCTACTGCCGCCCATATAAACCTTCTGCATCAGCAGAGATTCTTGCAGCTAACACAACAACACCAGCAACAGCAACTCTTAAAAGCAATGCCTCAGCCACGGCCCCAAGTACAGCAGCAATTTCCGCAACAGAATCTCCCTATGAGATCTCCTGCAAAACCAGTGTATGAACCTGGAATGTGTGCACGGCGCTTGACGCATTATATGTATCAGCAACAACATAGGCCTGAAGACAATAATATTGAATTCTGGAGAAAATTTGTTGCCGAGTATTTTGTACCTCATGCCAAGAAGAAATGGTGTGTTTCTATGTATGGAAGTGGCCGGCAGACAACTGGTGTTTTCCCTCAGGATGTATGGCATTGTGAGATATGCAATCGCAAGCCTGGGCGGGGCTTTGAAGCAACTGTTGAGGTTCTTCCCCGGCTATTTAAAATCAAGTATGAAAGTGGTACCTTGGAGGAACTTCTGTATGTTGATATGCCTCGTGAGTATCATAATTCATCTGGTCAGATTGTGCTGGACTATGCCAAAGCAATACAAGAAAGTGTTTTTGAGCAGCTTCGTGTTGTTCGGGATGGTCAACTTCGAATCGTGTTCTCTCCAGACTTGAAGGTTAGTCAGCTTGGGGCTGCAGCTCAAAAATACCAGGCTGCTACTCAAAATGCATCATCTAATTTATCTATTCCAGACATACAAAGTAATTGTAATATGTTTGTATCGTCAGCTCGGCAGTTGGCAAAAACCCTGGAAGTGCCATTAGTAAATGATTTAGGCTATACAAAGAGATACGTAAGGTGTCTACAGATATCAGAAGTGGTTAATAGTATGAAGGACTTGATTGATTACAGCCGAGAGACAGGGACTGGACCTATGGAGAGCTTAGCCAAGTTTCCTCGAAGGACGAGTACTTCATCTGGGTTTCACAATCAAGCACAGCAGTCTGATGAACAAATGCAGCAGCAACAGCAACAGCAAACGGTGGGCCAGAATTCAAATGACGCAAGCTCTGTGCAGGCCAATATGCAACTTGCTGTTAGTAATGGACCTAGTGGTATGGCTAGTGTAAATAACGTGAACACAGCATCCACATCTACCTCTGCAAGCACCATTGTGGGTCTCCTCCATCAAAATTCCATGAATTCCAGGCAACAGAGTTCGATGAATAATGCAAACAGTCCCTATGGAGGAAGTTCTGTTCAGATTCCATCCCCTGGTTCTTCTAGTACAATCCCTCAGACTCAAGCAAACCCTTCTCCATTCCAGTCACCAACACCCTCATCGAACAATCCATCCCAAACATCTCATGGTGCCTTGACAGCTACCAATCACATGAGTGCAGCAAATTCACCAGCAAATGTATCCATGCAACAGCCAGCCCTTTCTGGTGAGGCTGATCCAAGTGATTCCCAGAGCTCTGTCCAGAAAATTATACACGACATGATGATGTCCAACCAGCTTAATGGCTCAGGTAGTATGGTTGGTGTGGGTTCTCTGGGAAACGATGTGAAAAACATGAATGGGATTTTGTCTAGTAGCAACAACACAGGCATGAACGGTGGCAACTGTCTGTCGGGGAATGTCATGGGCAACAGTAACTCAGGTATGGGGGGTGGTGGATTTGGGAGTATGGGTGGACTTGGTCAGCCTGCCATGGTTAATGGAATAAGAGCTGCAATGGGAAATAATTCTGTTATGAATGGAAGGGTTGGAATGGCATCAATGGCTCGAGAACAAAGTATGCATCATCAACAGGATATAGGGAGCCAGCTACTTAGTGGGCTTGGAGCGGTTAATGGGTTTAATAATCTTCAATTTGATTGGAAACATTCTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0010243 GO:0010272 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0035670 GO:0036293 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0046898 GO:0046982 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060090 GO:0060992 GO:0061458 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901363 GO:1901654 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM_bind

Protein Analysis

889

Amino Acids

96.27

Weight (kDa)

8.81

Isoelectric Point (pI)

57.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM_bind	PF01803	341 - 572	1.4e-51	LIM-domain binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43850 AT1G43850
fragaria_vesca	FvH4_2g14890
malus_domestica	MD05G1012000.v1.1 MD10G1012000.v1.1
prunus_persica	Prupe.8G017000_v2.0.a1 Prupe.8G017000_v2.0.a1 Prupe.8G017000_v2.0.a1
pyrus_communis	pycom05g00700 pycom10g00760
rosa_chinensis	RchiOBHm_Chr6g0277461
rosa_laevigata	RLG00000013299
rosa_multiflora	Rmu_co8465657.1_g000001 Rmu_sc0003910.1_g000012
rosa_roxburghii	Rroxscaffold_7G00191290
rosa_rugosa	Rorug06G0108400 Rorug06G0108500
rosa_samantha	Rh6AG219300 Rh6BG223200 Rh6CG225700 Rh6DG216000
rosa_wichuraiana	Rw6G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	345
Acc65I	GGTACC	2 cut(s)	4, 1283
AccB1I	GGYRCC	4 cut(s)	4, 35, 1283, 2141
AccB7I	CCANNNNNTGG	2 cut(s)	32, 2045
AccBSI	CCGCTC	1 cut(s)	2621
AccI	GTMKAC	1 cut(s)	1633
AccII	CGCG	1 cut(s)	142
AciI	CCGC	7 cut(s)	17, 140, 707, 840, 956, 1222, 2621
AclWI	GGATC	2 cut(s)	287, 2222
AcoI	YGGCCR	1 cut(s)	1153
AcsI	RAATTY	9 cut(s)	70, 229, 469, 1076, 1088, 1822, 1963, 1972, 2176
AcuI	CTGAAG	2 cut(s)	671, 1080
AfaI	GTAC	8 cut(s)	6, 145, 373, 942, 1110, 1285, 1741, 2059
AfiI	CCNNNNNNNGG	6 cut(s)	32, 233, 557, 1223, 2018, 2045
AflIII	ACRYGT	1 cut(s)	810
AgsI	TTSAA	8 cut(s)	69, 328, 411, 1076, 1232, 1444, 1827, 2645
AjnI	CCWGG	9 cut(s)	247, 357, 367, 1003, 1216, 1479, 1578, 1976, 2044
AleI	CACNNNNGTG	2 cut(s)	1943, 2166
AloI	GAACNNNNNNTCC	6 cut(s)	1901, 1933, 2013, 2045, 2108, 2140
Alw21I	GWGCWC	2 cut(s)	1018, 2249
Alw26I	GTCTC	3 cut(s)	139, 1682, 1955
Alw44I	GTGCAC	1 cut(s)	1014
AlwI	GGATC	2 cut(s)	287, 2222
AlwNI	CAGNNNCTG	1 cut(s)	1697
Ama87I	CYCGRG	2 cut(s)	458, 2559
AoxI	GGCC	6 cut(s)	14, 932, 1055, 1153, 1816, 1848
ApaLI	GTGCAC	1 cut(s)	1014
ApoI	RAATTY	9 cut(s)	70, 229, 469, 1076, 1088, 1822, 1963, 1972, 2176
Asp700I	GAANNNNTTC	1 cut(s)	2518
Asp718I	GGTACC	2 cut(s)	4, 1283
AspLEI	GCGC	1 cut(s)	1023
AspS9I	GGNCC	7 cut(s)	14, 98, 245, 933, 1700, 1816, 1877
AsuC2I	CCSGG	1 cut(s)	1255
AsuHPI	GGTGA	5 cut(s)	42, 129, 2091, 2172, 2231
AsuII	TTCGAA	1 cut(s)	1420
AvaI	CYCGRG	2 cut(s)	458, 2559
AvaII	GGWCC	4 cut(s)	98, 245, 1700, 1877
AxyI	CCTNAGG	1 cut(s)	1179
BaeGI	GKGCMC	2 cut(s)	40, 1018
BanI	GGYRCC	4 cut(s)	4, 35, 1283, 2141
BanII	GRGCYC	2 cut(s)	597, 2249
BarI	GAAGNNNNNNTAC	2 cut(s)	1723, 1755
BauI	CACGAG	1 cut(s)	1317
BbsI	GAAGAC	2 cut(s)	183, 1068
Bbv12I	GWGCWC	2 cut(s)	1018, 2249
BbvCI	CCTCAGC	1 cut(s)	924
BccI	CCATC	5 cut(s)	267, 1403, 1965, 2047, 2131
BceAI	ACGGC	2 cut(s)	947, 1034
BciT130I	CCWGG	9 cut(s)	249, 359, 369, 1005, 1218, 1481, 1580, 1978, 2046
BciVI	GTATCC	1 cut(s)	2203
BclI	TGATCA	2 cut(s)	610, 736
BcnI	CCSGG	1 cut(s)	1255
BcoDI	GTCTC	3 cut(s)	139, 1682, 1955
BfaI	CTAG	5 cut(s)	303, 1881, 1893, 2055, 2364
BfmI	CTRYAG	2 cut(s)	1464, 1634
BfoI	RGCGCY	1 cut(s)	1024
BfuI	GTATCC	1 cut(s)	2203
BglII	AGATCT	1 cut(s)	977
BlpI	GCTNAGC	2 cut(s)	565, 1714
BmcAI	AGTACT	1 cut(s)	1741
Bme18I	GGWCC	4 cut(s)	98, 245, 1700, 1877
BmeT110I	CYCGRG	2 cut(s)	458, 2559
BmgT120I	GGNCC	7 cut(s)	14, 98, 245, 933, 1700, 1816, 1877
BmrI	ACTGGG	3 cut(s)	34, 288, 592
BmsI	GCATC	7 cut(s)	359, 763, 868, 1508, 1925, 2558, 2584
BmuI	ACTGGG	3 cut(s)	34, 288, 592
BpiI	GAAGAC	2 cut(s)	183, 1068
BpmI	CTGGAG	2 cut(s)	1102, 1419
Bpu10I	CCTNAGC	2 cut(s)	924, 2299
Bpu1102I	GCTNAGC	2 cut(s)	565, 1714
Bpu14I	TTCGAA	1 cut(s)	1420
BpuEI	CTTGAG	2 cut(s)	813, 2058
BpuMI	CCSGG	1 cut(s)	1255
BsaAI	YACGTR	1 cut(s)	1624
BsaI	GGTCTC	1 cut(s)	1955
BsaJI	CCNNGG	7 cut(s)	929, 1217, 1253, 1287, 1578, 2044, 2484
BsaXI	ACNNNNNCTCC	6 cut(s)	584, 614, 951, 981, 2449, 2479
Bsc4I	CCNNNNNNNGG	6 cut(s)	32, 233, 557, 1223, 2018, 2045
Bse118I	RCCGGY	1 cut(s)	1155
Bse1I	ACTGG	7 cut(s)	40, 283, 598, 992, 1171, 1702, 2095
Bse21I	CCTNAGG	1 cut(s)	1179
Bse3DI	GCAATG	3 cut(s)	319, 924, 2514
BseBI	CCWGG	9 cut(s)	249, 359, 369, 1005, 1218, 1481, 1580, 1978, 2046
BseDI	CCNNGG	7 cut(s)	929, 1217, 1253, 1287, 1578, 2044, 2484
BseGI	GGATG	5 cut(s)	1189, 1414, 1916, 2039, 2123
BseLI	CCNNNNNNNGG	6 cut(s)	32, 233, 557, 1223, 2018, 2045
BseMI	GCAATG	3 cut(s)	319, 924, 2514
BseMII	CTCAG	7 cut(s)	125, 276, 938, 1193, 2081, 2313, 2445
BseNI	ACTGG	7 cut(s)	40, 283, 598, 992, 1171, 1702, 2095
BseRI	GAGGAG	1 cut(s)	1943
BseSI	GKGCMC	2 cut(s)	40, 1018
BseYI	CCCAGC	1 cut(s)	726
BsgI	GTGCAG	2 cut(s)	1865, 2190
Bsh1236I	CGCG	1 cut(s)	142
BshFI	GGCC	6 cut(s)	16, 934, 1057, 1155, 1818, 1850
BshNI	GGYRCC	4 cut(s)	4, 35, 1283, 2141
BsiHKAI	GWGCWC	2 cut(s)	1018, 2249
BsiHKCI	CYCGRG	2 cut(s)	458, 2559
BsiSI	CCGG	2 cut(s)	1156, 1255
BslFI	GGGAC	2 cut(s)	1708, 1995
BslI	CCNNNNNNNGG	6 cut(s)	32, 233, 557, 1223, 2018, 2045
BsmAI	GTCTC	3 cut(s)	139, 1682, 1955
BsmFI	GGGAC	2 cut(s)	1708, 1995
BsmI	GAATGC	1 cut(s)	84
BsnI	GGCC	6 cut(s)	16, 934, 1057, 1155, 1818, 1850
Bso31I	GGTCTC	1 cut(s)	1955
BsoBI	CYCGRG	2 cut(s)	458, 2559
Bsp119I	TTCGAA	1 cut(s)	1420
Bsp1286I	GDGCHC	4 cut(s)	40, 597, 1018, 2249
Bsp143I	GATC	6 cut(s)	292, 439, 610, 736, 977, 2227
Bsp1720I	GCTNAGC	2 cut(s)	565, 1714
Bsp19I	CCATGG	1 cut(s)	2484
BspACI	CCGC	7 cut(s)	17, 140, 707, 840, 956, 1222, 2621
BspANI	GGCC	6 cut(s)	16, 934, 1057, 1155, 1818, 1850
BspCNI	CTCAG	7 cut(s)	124, 277, 937, 1192, 2080, 2312, 2444
BspFNI	CGCG	1 cut(s)	142
BspMAI	CTGCAG	1 cut(s)	1468
BspPI	GGATC	2 cut(s)	287, 2222
BspT104I	TTCGAA	1 cut(s)	1420
BspT107I	GGYRCC	4 cut(s)	4, 35, 1283, 2141
BspTNI	GGTCTC	1 cut(s)	1955
BsrBI	CCGCTC	1 cut(s)	2621
BsrDI	GCAATG	3 cut(s)	319, 924, 2514
BsrFI	RCCGGY	1 cut(s)	1155
BsrI	ACTGG	7 cut(s)	40, 283, 598, 992, 1171, 1702, 2095
BssAI	RCCGGY	1 cut(s)	1155
BssECI	CCNNGG	7 cut(s)	929, 1217, 1253, 1287, 1578, 2044, 2484
BssMI	GATC	6 cut(s)	292, 439, 610, 736, 977, 2227
BssSI	CACGAG	1 cut(s)	1317
BssT1I	CCWWGG	2 cut(s)	1287, 2484
Bst2BI	CACGAG	1 cut(s)	1317
Bst2UI	CCWGG	9 cut(s)	249, 359, 369, 1005, 1218, 1481, 1580, 1978, 2046
Bst4CI	ACNGT	7 cut(s)	501, 1240, 1813, 2009, 2390, 2399, 2426
Bst6I	CTCTTC	1 cut(s)	829
BstAPI	GCANNNNNTGC	2 cut(s)	493, 637
BstBAI	YACGTR	1 cut(s)	1624
BstBI	TTCGAA	1 cut(s)	1420
BstC8I	GCNNGC	8 cut(s)	1157, 1214, 1837, 1848, 1936, 2208, 2481, 2600
BstDSI	CCRYGG	2 cut(s)	929, 2484
BstF5I	GGATG	5 cut(s)	1189, 1414, 1916, 2039, 2123
BstFNI	CGCG	1 cut(s)	142
BstH2I	RGCGCY	1 cut(s)	1024
BstHHI	GCGC	1 cut(s)	1023
BstKTI	GATC	6 cut(s)	295, 442, 613, 739, 980, 2230
BstMAI	GTCTC	3 cut(s)	139, 1682, 1955
BstMBI	GATC	6 cut(s)	292, 439, 610, 736, 977, 2227
BstNI	CCWGG	9 cut(s)	249, 359, 369, 1005, 1218, 1481, 1580, 1978, 2046
BstNSI	RCATGY	2 cut(s)	169, 814
BstSFI	CTRYAG	2 cut(s)	1464, 1634
BstSLI	GKGCMC	2 cut(s)	40, 1018
BstSNI	TACGTA	1 cut(s)	1624
BstUI	CGCG	1 cut(s)	142
BstV2I	GAAGAC	2 cut(s)	183, 1068
BstX2I	RGATCY	1 cut(s)	977
BstXI	CCANNNNNNTGG	1 cut(s)	2294
BstYI	RGATCY	1 cut(s)	977
Bsu36I	CCTNAGG	1 cut(s)	1179
BsuI	GTATCC	1 cut(s)	2203
BsuRI	GGCC	6 cut(s)	16, 934, 1057, 1155, 1818, 1850
BtgI	CCRYGG	2 cut(s)	929, 2484
BtsCI	GGATG	5 cut(s)	1189, 1414, 1916, 2039, 2123
BtsIMutI	CAGTG	1 cut(s)	999
Cac8I	GCNNGC	8 cut(s)	1157, 1214, 1837, 1848, 1936, 2208, 2481, 2600
CaiI	CAGNNNCTG	1 cut(s)	1697
CfoI	GCGC	1 cut(s)	1023
Cfr10I	RCCGGY	1 cut(s)	1155
Cfr13I	GGNCC	7 cut(s)	14, 98, 245, 933, 1700, 1816, 1877
CseI	GACGC	2 cut(s)	1036, 1841
Csp6I	GTAC	8 cut(s)	5, 144, 372, 941, 1109, 1284, 1740, 2058
CviQI	GTAC	8 cut(s)	5, 144, 372, 941, 1109, 1284, 1740, 2058
DpnI	GATC	6 cut(s)	294, 441, 612, 738, 979, 2229
DpnII	GATC	6 cut(s)	292, 439, 610, 736, 977, 2227
DraI	TTTAAA	1 cut(s)	1264
EaeI	YGGCCR	1 cut(s)	1153
Eam1104I	CTCTTC	1 cut(s)	829
EarI	CTCTTC	1 cut(s)	829
Ecl136II	GAGCTC	1 cut(s)	2247
Eco105I	TACGTA	1 cut(s)	1624
Eco130I	CCWWGG	2 cut(s)	1287, 2484
Eco147I	AGGCCT	1 cut(s)	1057
Eco24I	GRGCYC	2 cut(s)	597, 2249
Eco31I	GGTCTC	1 cut(s)	1955
Eco32I	GATATC	1 cut(s)	1641
Eco47I	GGWCC	4 cut(s)	98, 245, 1700, 1877
Eco53kI	GAGCTC	1 cut(s)	2247
Eco57I	CTGAAG	2 cut(s)	671, 1080
Eco81I	CCTNAGG	1 cut(s)	1179
Eco88I	CYCGRG	2 cut(s)	458, 2559
EcoICRI	GAGCTC	1 cut(s)	2247
EcoRI	GAATTC	3 cut(s)	1076, 1822, 1972
EcoRII	CCWGG	9 cut(s)	247, 357, 367, 1003, 1216, 1479, 1578, 1976, 2044
EcoRV	GATATC	1 cut(s)	1641
EcoT14I	CCWWGG	2 cut(s)	1287, 2484
EcoT22I	ATGCAT	3 cut(s)	352, 1501, 2577
EcoT38I	GRGCYC	2 cut(s)	597, 2249
ErhI	CCWWGG	2 cut(s)	1287, 2484
FalI	AAGNNNNNCTT	2 cut(s)	808, 840
FaqI	GGGAC	2 cut(s)	1708, 1995
FauI	CCCGC	1 cut(s)	1215
FbaI	TGATCA	2 cut(s)	610, 736
FblI	GTMKAC	1 cut(s)	1633
FokI	GGATG	5 cut(s)	1196, 1421, 1903, 2026, 2110
FriOI	GRGCYC	2 cut(s)	597, 2249
FspBI	CTAG	5 cut(s)	303, 1881, 1893, 2055, 2364
GlaI	GCGC	1 cut(s)	1022
GsaI	CCCAGC	1 cut(s)	730
GsuI	CTGGAG	2 cut(s)	1102, 1419
HaeII	RGCGCY	1 cut(s)	1024
HaeIII	GGCC	6 cut(s)	16, 934, 1057, 1155, 1818, 1850
HapII	CCGG	2 cut(s)	1156, 1255
HgaI	GACGC	2 cut(s)	1036, 1841
HhaI	GCGC	1 cut(s)	1023
Hin6I	GCGC	1 cut(s)	1021
HinP1I	GCGC	1 cut(s)	1021
HincII	GTYRAC	3 cut(s)	401, 603, 1415
HindII	GTYRAC	3 cut(s)	401, 603, 1415
HinfI	GANTC	9 cut(s)	223, 287, 463, 870, 964, 1422, 2035, 2071, 2237
HpaII	CCGG	2 cut(s)	1156, 1255
HphI	GGTGA	5 cut(s)	42, 129, 2091, 2172, 2231
Hpy166II	GTNNAC	8 cut(s)	101, 401, 603, 1016, 1415, 1634, 1909, 2468
Hpy188I	TCNGA	8 cut(s)	292, 468, 690, 1344, 1645, 1777, 2034, 2070
Hpy8I	GTNNAC	8 cut(s)	101, 401, 603, 1016, 1415, 1634, 1909, 2468
Hpy99I	CGWCG	1 cut(s)	130
HpyCH4III	ACNGT	7 cut(s)	501, 1240, 1813, 2009, 2390, 2399, 2426
HpyCH4IV	ACGT	2 cut(s)	1623, 1905
HpySE526I	ACGT	2 cut(s)	1623, 1905
HspAI	GCGC	1 cut(s)	1021
KpnI	GGTACC	2 cut(s)	8, 1287
KroI	GCCGGC	1 cut(s)	1155
KroNI	GCCGGC	1 cut(s)	1157
Ksp22I	TGATCA	2 cut(s)	610, 736
Kzo9I	GATC	6 cut(s)	292, 439, 610, 736, 977, 2227
LmnI	GCTCC	5 cut(s)	337, 561, 592, 2595, 2618
LweI	GCATC	7 cut(s)	359, 763, 868, 1508, 1925, 2558, 2584
MaeI	CTAG	5 cut(s)	303, 1881, 1893, 2055, 2364
MaeII	ACGT	2 cut(s)	1623, 1905
MaeIII	GTNAC	4 cut(s)	155, 801, 2097, 2426
MalI	GATC	6 cut(s)	294, 441, 612, 738, 979, 2229
MbiI	CCGCTC	1 cut(s)	2621
MboI	GATC	6 cut(s)	292, 439, 610, 736, 977, 2227
MboII	GAAGA	7 cut(s)	183, 816, 1073, 1135, 1241, 2043, 2633
MfeI	CAATTG	1 cut(s)	27
MflI	RGATCY	1 cut(s)	977
MhlI	GDGCHC	4 cut(s)	40, 597, 1018, 2249
MlyI	GAGTC	2 cut(s)	296, 2065
MmeI	TCCRAC	4 cut(s)	556, 570, 2307, 2521
Mph1103I	ATGCAT	3 cut(s)	352, 1501, 2577
MroNI	GCCGGC	1 cut(s)	1155
MroXI	GAANNNNTTC	1 cut(s)	2518
MseI	TTAA	9 cut(s)	201, 911, 1263, 1653, 2292, 2490, 2625, 2634, 2668
MslI	CAYNNNNRTG	5 cut(s)	164, 1943, 2166, 2276, 2381
MspA1I	CMGCKG	1 cut(s)	430
MspI	CCGG	2 cut(s)	1156, 1255
MunI	CAATTG	1 cut(s)	27
Mva1269I	GAATGC	1 cut(s)	84
MvaI	CCWGG	9 cut(s)	249, 359, 369, 1005, 1218, 1481, 1580, 1978, 2046
MvnI	CGCG	1 cut(s)	142
NaeI	GCCGGC	1 cut(s)	1157
NciI	CCSGG	1 cut(s)	1255
NcoI	CCATGG	1 cut(s)	2484
NdeII	GATC	6 cut(s)	292, 439, 610, 736, 977, 2227
NgoMIV	GCCGGC	1 cut(s)	1155
NmeAIII	GCCGAG	3 cut(s)	1123, 1540, 1709
NmuCI	GTSAC	1 cut(s)	2097
NsiI	ATGCAT	3 cut(s)	352, 1501, 2577
NspI	RCATGY	2 cut(s)	169, 814
NspV	TTCGAA	1 cut(s)	1420
OliI	CACNNNNGTG	2 cut(s)	1943, 2166
PaeR7I	CTCGAG	2 cut(s)	458, 2559
PceI	AGGCCT	1 cut(s)	1057
PciI	ACATGT	1 cut(s)	810
PctI	GAATGC	1 cut(s)	84
PdiI	GCCGGC	1 cut(s)	1157
PdmI	GAANNNNTTC	1 cut(s)	2518
PfeI	GAWTC	7 cut(s)	223, 463, 870, 964, 1422, 2035, 2237
PflFI	GACNNNGTC	1 cut(s)	2472
PflMI	CCANNNNNTGG	2 cut(s)	32, 2045
PleI	GAGTC	2 cut(s)	295, 2065
PpsI	GAGTC	2 cut(s)	295, 2065
Ppu21I	YACGTR	1 cut(s)	1624
PscI	ACATGT	1 cut(s)	810
PsiI	TTATAA	1 cut(s)	345
Psp124BI	GAGCTC	1 cut(s)	2249
Psp6I	CCWGG	9 cut(s)	247, 357, 367, 1003, 1216, 1479, 1578, 1976, 2044
PspFI	CCCAGC	1 cut(s)	726
PspGI	CCWGG	9 cut(s)	247, 357, 367, 1003, 1216, 1479, 1578, 1976, 2044
PspPI	GGNCC	7 cut(s)	14, 98, 245, 933, 1700, 1816, 1877
PstI	CTGCAG	1 cut(s)	1468
PstNI	CAGNNNCTG	1 cut(s)	1697
PsuI	RGATCY	1 cut(s)	977
PsyI	GACNNNGTC	1 cut(s)	2472
PvuII	CAGCTG	1 cut(s)	430
RsaI	GTAC	8 cut(s)	6, 145, 373, 942, 1110, 1285, 1741, 2059
RsaNI	GTAC	8 cut(s)	5, 144, 372, 941, 1109, 1284, 1740, 2058
RseI	CAYNNNNRTG	5 cut(s)	164, 1943, 2166, 2276, 2381
SacI	GAGCTC	1 cut(s)	2249
SaqAI	TTAA	9 cut(s)	201, 911, 1263, 1653, 2292, 2490, 2625, 2634, 2668
Sau3AI	GATC	6 cut(s)	292, 439, 610, 736, 977, 2227
Sau96I	GGNCC	7 cut(s)	14, 98, 245, 933, 1700, 1816, 1877
ScaI	AGTACT	1 cut(s)	1741
SchI	GAGTC	2 cut(s)	296, 2065
SduI	GDGCHC	4 cut(s)	40, 597, 1018, 2249
SfaNI	GCATC	7 cut(s)	359, 763, 868, 1508, 1925, 2558, 2584
SfcI	CTRYAG	2 cut(s)	1464, 1634
Sfr274I	CTCGAG	2 cut(s)	458, 2559
SfuI	TTCGAA	1 cut(s)	1420
SinI	GGWCC	4 cut(s)	98, 245, 1700, 1877
SlaI	CTCGAG	2 cut(s)	458, 2559
SmiMI	CAYNNNNRTG	5 cut(s)	164, 1943, 2166, 2276, 2381
SmlI	CTYRAG	4 cut(s)	458, 828, 2073, 2559
SmoI	CTYRAG	4 cut(s)	458, 828, 2073, 2559
SnaBI	TACGTA	1 cut(s)	1624
SseBI	AGGCCT	1 cut(s)	1057
SsiI	CCGC	7 cut(s)	17, 140, 707, 840, 956, 1222, 2621
SspI	AATATT	1 cut(s)	1072
SspMI	CTAG	5 cut(s)	303, 1881, 1893, 2055, 2364
SstI	GAGCTC	1 cut(s)	2249
StuI	AGGCCT	1 cut(s)	1057
StyI	CCWWGG	2 cut(s)	1287, 2484
TaaI	ACNGT	7 cut(s)	501, 1240, 1813, 2009, 2390, 2399, 2426
TaiI	ACGT	2 cut(s)	1626, 1908
TaqI	TCGA	7 cut(s)	459, 556, 1420, 1729, 1991, 2114, 2560
TatI	WGTACW	3 cut(s)	940, 1739, 2057
TauI	GCSGC	3 cut(s)	19, 709, 842
TfiI	GAWTC	7 cut(s)	223, 463, 870, 964, 1422, 2035, 2237
Tru1I	TTAA	9 cut(s)	201, 911, 1263, 1653, 2292, 2490, 2625, 2634, 2668
Tru9I	TTAA	9 cut(s)	201, 911, 1263, 1653, 2292, 2490, 2625, 2634, 2668
TscAI	CASTG	1 cut(s)	999
TseFI	GTSAC	1 cut(s)	2097
Tsp45I	GTSAC	1 cut(s)	2097
TspGWI	ACGGA	1 cut(s)	114
TspRI	CASTG	1 cut(s)	999
Tth111I	GACNNNGTC	1 cut(s)	2472
Van91I	CCANNNNNTGG	2 cut(s)	32, 2045
VneI	GTGCAC	1 cut(s)	1014
VpaK11BI	GGWCC	4 cut(s)	98, 245, 1700, 1877
XapI	RAATTY	9 cut(s)	70, 229, 469, 1076, 1088, 1822, 1963, 1972, 2176
XceI	RCATGY	2 cut(s)	169, 814
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2135, 2606
XhoI	CTCGAG	2 cut(s)	458, 2559
XmiI	GTMKAC	1 cut(s)	1633
XmnI	GAANNNNTTC	1 cut(s)	2518
XspI	CTAG	5 cut(s)	303, 1881, 1893, 2055, 2364
ZrmI	AGTACT	1 cut(s)	1741
Zsp2I	ATGCAT	3 cut(s)	352, 1501, 2577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.