Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0009217

Physical Location & Seq

Genomic Coordinates Forward (+)

42300845 .. 42307107

Gene Structure 6263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG223200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2736 bp

ATGGTACCTTCGGGGCCGCCCAATCCAATTGGTGGTGCCCAGTCTGTTTCACCTTCGCTCTTGCGTTCAAATTCTGGAATGCTTGGAGGTCAAAATGGTCCACTACCTTCTCAGTCAGCTTTTCCGTCGCTTGTCTCACCGCGTACTCAATTCAGTAACATGAACATGCTTGGAAATGTAGCCAATGTGTCTTCTCTCCTTAATCAGCCTTTTGGAAATGGGATTCCAAATTCAGGGCTTTCTGGTCCTGGTAGCAGCCATCGTGGAGGTATTGATACTGGGGCTGAGTCCGATCCCCTCTCTAGTGTTGGCAATGGAATGGGTTTCAATGCTCCTTCATCTTATAATGCATCAAACCTGGCTAATCCTGGTACATCTGGTCAAGGTCAGGGTCAGGGTCAACAATTTTCTAACCCTTCTGGTAATCAACTGTTGGCAGATCAACAACAGCAACAACTCGAGAATCAGAATTTTCAGCATAGTCAGCAGCAAATGCAACAGTTCTCTGCCCCTCACAACACACAGCAGCAGCAGCAGCAGCAGCAACAGCAATTTCAGCCAATTCGAGGGAGCTTAGCTGGTGTTGGACAAGTCAAGTTGGAGCCCCAGTTGACAAATGATCAACATGGACAGCAGCAGCAGCAGTTGCAGTCTTTTAGAGGTCTTGGTCAAGTGAAAATGGAACCTCAACAACTTCAGAACATGAGAAACTTGCCGCCTGTAAAAGTGGAACCCCAGCATAATGATCAGTCATTGTATTTGCATCAACAACAGCAACAGCAACAGCAACAGCAACAACAGCAGTTACTCAACATGTCAAGGCACTCTTCTCAAGCTACTGCCGCCCATATAAACCTTCTGCATCAGCAGAGATTCTTGCAGCTAACACAACAACACCAGCAACAGCAACTCTTAAAAGCAATGCCTCAGCCACGGCCCCAAGTACAGCAGCAATTTCCGCAACAGAATCTCCCTATGAGATCTCCTGCAAAACCAGTGTATGAACCTGGAATGTGTGCACGGCGCTTGACGCATTATATGTATCAGCAACAACATAGGCCTGAAGACAATAATATTGAATTCTGGAGAAAATTTGTTGCCGAGTATTTTGTACCTCATGCCAAGAAGAAATGGTGTGTTTCTATGTATGGAAGTGGCCGGCAGACAACTGGTGTTTTCCCTCAGGATGTATGGCATTGTGAGATATGCAATCGCAAGCCTGGGCGGGGCTTTGAAGCAACTGTTGAGGTTCTTCCCCGGCTATTTAAAATCAAGTATGAAAGTGGTACCTTGGAGGAACTTCTGTATGTTGATATGCCTCGTGAGTATCATAATTCATCTGGTCAGATTGTGCTGGACTATGCCAAAGCAATACAAGAAAGTGTTTTTGAGCAGCTTCGTGTTGTTCGGGATGGTCAACTTCGAATCGTGTTCTCTCCAGACTTGAAGATATGCTCTTGGGAGTTTTGTGCAAGGCGCCATGAAGAGCTTATCCCTCGAAGATTACTGATACCTCAGGTTAGTCAACTTGGGGCTGCAGCTCAAAAATACCAGGCTGCTACTCAAAATGCATCATCTAATTTATCTATTCCAGACATACAAAGTAATTGTAATATGTTTGTATCGTCAGCTCGGCAGTTGGCAAAAACTCTGGAAGTGCCATTAGTAAATGATTTAGGCTATACAAAGAGATACGTAAGGTGTCTACAGATATCAGAAGTGGTTAATAGTATGAAGGACTTGATTGATTACAGCCGAGAGACAGGGACTGGACCTATGGAGAGCTTAGCCAAGTTTCCTCGAAGGACGAGTACTTCATCTGGGTTTCACAATCAAGCACAGCAGTCTGATGAACAAATGCAGCAGCAACAGCAAACGGTGGGCCAGAATTCAAATGACGCAAGCTCTGTGCAGGCCAATATGCAACTTGCTGTTAGTAATGGACCTAGTGGTATGGCTAGTGTAAATAACGTGAACACAGCATCCACATCTACCTCTGCAAGCACCATTGTGGGTCTCCTCCATCAAAATTCCATGAATTCCAGGCAACAGAGTTCGATGAATAATGCAAACAGTCCCTATGGAGGAAGTTCTGTTCAGATTCCATCCCCTGGTTCTTCTAGTACAATCCCTCAGACTCAAGCAAACCCTTCTCCATTCCAGTCACCAACACCCTCATCGAACAATCCATCCCAAACATCTCATGGTGCCTTGACAGCTACCAATCACATGAGTGCAGCAAATTCACCAGCAAATGTATCCATGCAACAGCCAGCCCTTTCTGGTGAGGCTGATCCAAGTGATTCCCAGAGCTCTGTCCAGAAAATTATACACGATATGATGATGTCCAACCAGCTTAATGGCTCAGGTAGTATGGTTGGTGTGGGTTCTCTGGGAAACGATGTGAAAAACATGAATGGGATTTTGTCTAGTAGCAACAACACAGGCATGAACGGTGGCAACTGTCTGTCGGGGAATGTCATGGGCAACAGTAACTCAGGTATGGGGGGTGGTGGATTTGGGAGTATGGGTGGACTTGGTCAGCCTGCCATGGTTAATGGAATAAGAGCTGCAATGGGAAATAATTCTGTTATGAATGGAAGGGTTGGAATGGCATCAATGGCTCGAGAACAAAGTATGCATCATCAACAGGATATAGGGAGCCAGCTACTTGGTGGGCTTGGAGCGGTTAATGGGTTTAATAATCTTCAATTTGATTGGAAACATTCTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0010243 GO:0010272 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0035670 GO:0036293 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0046898 GO:0046982 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060090 GO:0060992 GO:0061458 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901363 GO:1901654 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM_bind

Protein Analysis

911

Amino Acids

98.99

Weight (kDa)

8.83

Isoelectric Point (pI)

57.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM_bind	PF01803	342 - 596	1.4e-67	LIM-domain binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43850 AT1G43850
fragaria_vesca	FvH4_2g14890
malus_domestica	MD05G1012000.v1.1 MD10G1012000.v1.1
prunus_persica	Prupe.8G017000_v2.0.a1 Prupe.8G017000_v2.0.a1 Prupe.8G017000_v2.0.a1
pyrus_communis	pycom05g00700 pycom10g00760
rosa_chinensis	RchiOBHm_Chr6g0277461
rosa_laevigata	RLG00000013299
rosa_multiflora	Rmu_co8465657.1_g000001 Rmu_sc0003910.1_g000012
rosa_roxburghii	Rroxscaffold_7G00191290
rosa_rugosa	Rorug06G0108400 Rorug06G0108500
rosa_samantha	Rh6AG219300 Rh6BG223200 Rh6CG225700 Rh6DG216000
rosa_wichuraiana	Rw6G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	345
Acc65I	GGTACC	2 cut(s)	4, 1286
AccB1I	GGYRCC	5 cut(s)	4, 35, 1286, 1476, 2207
AccB7I	CCANNNNNTGG	2 cut(s)	32, 2111
AccBSI	CCGCTC	1 cut(s)	2687
AccI	GTMKAC	1 cut(s)	1705
AccII	CGCG	1 cut(s)	142
AciI	CCGC	7 cut(s)	17, 140, 716, 843, 959, 1225, 2687
AclWI	GGATC	2 cut(s)	287, 2288
AcoI	YGGCCR	1 cut(s)	1156
AcsI	RAATTY	9 cut(s)	70, 229, 469, 1079, 1091, 1888, 2029, 2038, 2242
AcuI	CTGAAG	2 cut(s)	680, 1083
AcyI	GRCGYC	1 cut(s)	1477
AfaI	GTAC	8 cut(s)	6, 145, 373, 945, 1113, 1288, 1813, 2125
AfiI	CCNNNNNNNGG	6 cut(s)	32, 233, 566, 1226, 2084, 2111
AflIII	ACRYGT	1 cut(s)	813
AgsI	TTSAA	7 cut(s)	69, 328, 1079, 1235, 1447, 1893, 2711
AjnI	CCWGG	8 cut(s)	247, 357, 367, 1006, 1219, 1551, 2042, 2110
AleI	CACNNNNGTG	2 cut(s)	2009, 2232
AloI	GAACNNNNNNTCC	6 cut(s)	1967, 1999, 2079, 2111, 2174, 2206
Alw21I	GWGCWC	2 cut(s)	1021, 2315
Alw26I	GTCTC	3 cut(s)	139, 1754, 2021
Alw44I	GTGCAC	1 cut(s)	1017
AlwI	GGATC	2 cut(s)	287, 2288
AlwNI	CAGNNNCTG	1 cut(s)	1769
Ama87I	CYCGRG	2 cut(s)	458, 2625
AoxI	GGCC	6 cut(s)	14, 935, 1058, 1156, 1882, 1914
ApaLI	GTGCAC	1 cut(s)	1017
ApoI	RAATTY	9 cut(s)	70, 229, 469, 1079, 1091, 1888, 2029, 2038, 2242
Asp700I	GAANNNNTTC	1 cut(s)	2584
Asp718I	GGTACC	2 cut(s)	4, 1286
AspLEI	GCGC	2 cut(s)	1026, 1479
AspS9I	GGNCC	7 cut(s)	14, 98, 245, 936, 1772, 1882, 1943
AsuC2I	CCSGG	1 cut(s)	1258
AsuHPI	GGTGA	5 cut(s)	42, 129, 2157, 2238, 2297
AsuII	TTCGAA	1 cut(s)	1423
AvaI	CYCGRG	2 cut(s)	458, 2625
AvaII	GGWCC	4 cut(s)	98, 245, 1772, 1943
AxyI	CCTNAGG	2 cut(s)	1182, 1515
BaeGI	GKGCMC	2 cut(s)	40, 1021
BanI	GGYRCC	5 cut(s)	4, 35, 1286, 1476, 2207
BanII	GRGCYC	2 cut(s)	606, 2315
BarI	GAAGNNNNNNTAC	2 cut(s)	1795, 1827
BauI	CACGAG	1 cut(s)	1320
BbsI	GAAGAC	2 cut(s)	183, 1071
Bbv12I	GWGCWC	2 cut(s)	1021, 2315
BbvCI	CCTCAGC	1 cut(s)	927
BccI	CCATC	5 cut(s)	267, 1406, 2031, 2113, 2197
BceAI	ACGGC	2 cut(s)	950, 1037
BciT130I	CCWGG	8 cut(s)	249, 359, 369, 1008, 1221, 1553, 2044, 2112
BciVI	GTATCC	1 cut(s)	2269
BclI	TGATCA	2 cut(s)	619, 745
BcnI	CCSGG	1 cut(s)	1258
BcoDI	GTCTC	3 cut(s)	139, 1754, 2021
BfaI	CTAG	5 cut(s)	303, 1947, 1959, 2121, 2430
BfmI	CTRYAG	2 cut(s)	1536, 1706
BfoI	RGCGCY	2 cut(s)	1027, 1480
BfuI	GTATCC	1 cut(s)	2269
BglII	AGATCT	1 cut(s)	980
BlpI	GCTNAGC	2 cut(s)	574, 1786
BmcAI	AGTACT	1 cut(s)	1813
Bme1390I	CCNGG	9 cut(s)	249, 359, 369, 1008, 1221, 1258, 1553, 2044, 2112
Bme18I	GGWCC	4 cut(s)	98, 245, 1772, 1943
BmeT110I	CYCGRG	2 cut(s)	458, 2625
BmgT120I	GGNCC	7 cut(s)	14, 98, 245, 936, 1772, 1882, 1943
BmrFI	CCNGG	9 cut(s)	249, 359, 369, 1008, 1221, 1258, 1553, 2044, 2112
BmrI	ACTGGG	3 cut(s)	34, 288, 601
BmsI	GCATC	7 cut(s)	359, 772, 871, 1580, 1991, 2624, 2650
BmuI	ACTGGG	3 cut(s)	34, 288, 601
BpiI	GAAGAC	2 cut(s)	183, 1071
BpmI	CTGGAG	2 cut(s)	1105, 1422
Bpu10I	CCTNAGC	2 cut(s)	927, 2365
Bpu1102I	GCTNAGC	2 cut(s)	574, 1786
Bpu14I	TTCGAA	1 cut(s)	1423
BpuEI	CTTGAG	2 cut(s)	816, 2124
BpuMI	CCSGG	1 cut(s)	1258
BsaAI	YACGTR	1 cut(s)	1696
BsaHI	GRCGYC	1 cut(s)	1477
BsaI	GGTCTC	1 cut(s)	2021
BsaJI	CCNNGG	6 cut(s)	932, 1220, 1256, 1290, 2110, 2550
BsaXI	ACNNNNNCTCC	6 cut(s)	593, 623, 954, 984, 2515, 2545
Bsc4I	CCNNNNNNNGG	6 cut(s)	32, 233, 566, 1226, 2084, 2111
Bse118I	RCCGGY	1 cut(s)	1158
Bse1I	ACTGG	7 cut(s)	40, 283, 607, 995, 1174, 1774, 2161
Bse21I	CCTNAGG	2 cut(s)	1182, 1515
Bse3DI	GCAATG	3 cut(s)	319, 927, 2580
BseBI	CCWGG	8 cut(s)	249, 359, 369, 1008, 1221, 1553, 2044, 2112
BseDI	CCNNGG	6 cut(s)	932, 1220, 1256, 1290, 2110, 2550
BseGI	GGATG	5 cut(s)	1192, 1417, 1982, 2105, 2189
BseLI	CCNNNNNNNGG	6 cut(s)	32, 233, 566, 1226, 2084, 2111
BseMI	GCAATG	3 cut(s)	319, 927, 2580
BseMII	CTCAG	8 cut(s)	125, 276, 941, 1196, 1529, 2147, 2379, 2511
BseNI	ACTGG	7 cut(s)	40, 283, 607, 995, 1174, 1774, 2161
BseRI	GAGGAG	1 cut(s)	2009
BseSI	GKGCMC	2 cut(s)	40, 1021
BseYI	CCCAGC	1 cut(s)	735
BsgI	GTGCAG	2 cut(s)	1931, 2256
Bsh1236I	CGCG	1 cut(s)	142
BshFI	GGCC	6 cut(s)	16, 937, 1060, 1158, 1884, 1916
BshNI	GGYRCC	5 cut(s)	4, 35, 1286, 1476, 2207
BsiHKAI	GWGCWC	2 cut(s)	1021, 2315
BsiHKCI	CYCGRG	2 cut(s)	458, 2625
BsiSI	CCGG	2 cut(s)	1159, 1258
BslFI	GGGAC	2 cut(s)	1780, 2061
BslI	CCNNNNNNNGG	6 cut(s)	32, 233, 566, 1226, 2084, 2111
BsmAI	GTCTC	3 cut(s)	139, 1754, 2021
BsmFI	GGGAC	2 cut(s)	1780, 2061
BsmI	GAATGC	1 cut(s)	84
BsnI	GGCC	6 cut(s)	16, 937, 1060, 1158, 1884, 1916
Bso31I	GGTCTC	1 cut(s)	2021
BsoBI	CYCGRG	2 cut(s)	458, 2625
Bsp119I	TTCGAA	1 cut(s)	1423
Bsp1286I	GDGCHC	4 cut(s)	40, 606, 1021, 2315
Bsp143I	GATC	6 cut(s)	292, 439, 619, 745, 980, 2293
Bsp1720I	GCTNAGC	2 cut(s)	574, 1786
Bsp19I	CCATGG	1 cut(s)	2550
BspACI	CCGC	7 cut(s)	17, 140, 716, 843, 959, 1225, 2687
BspANI	GGCC	6 cut(s)	16, 937, 1060, 1158, 1884, 1916
BspCNI	CTCAG	8 cut(s)	124, 277, 940, 1195, 1528, 2146, 2378, 2510
BspFNI	CGCG	1 cut(s)	142
BspMAI	CTGCAG	1 cut(s)	1540
BspPI	GGATC	2 cut(s)	287, 2288
BspQI	GCTCTTC	1 cut(s)	1479
BspT104I	TTCGAA	1 cut(s)	1423
BspT107I	GGYRCC	5 cut(s)	4, 35, 1286, 1476, 2207
BspTNI	GGTCTC	1 cut(s)	2021
BsrBI	CCGCTC	1 cut(s)	2687
BsrDI	GCAATG	3 cut(s)	319, 927, 2580
BsrFI	RCCGGY	1 cut(s)	1158
BsrI	ACTGG	7 cut(s)	40, 283, 607, 995, 1174, 1774, 2161
BssAI	RCCGGY	1 cut(s)	1158
BssECI	CCNNGG	6 cut(s)	932, 1220, 1256, 1290, 2110, 2550
BssMI	GATC	6 cut(s)	292, 439, 619, 745, 980, 2293
BssNI	GRCGYC	1 cut(s)	1477
BssSI	CACGAG	1 cut(s)	1320
BssT1I	CCWWGG	2 cut(s)	1290, 2550
Bst2BI	CACGAG	1 cut(s)	1320
Bst2UI	CCWGG	8 cut(s)	249, 359, 369, 1008, 1221, 1553, 2044, 2112
Bst4CI	ACNGT	8 cut(s)	432, 501, 1243, 1879, 2075, 2456, 2465, 2492
Bst6I	CTCTTC	2 cut(s)	832, 1479
BstACI	GRCGYC	1 cut(s)	1477
BstAPI	GCANNNNNTGC	2 cut(s)	493, 646
BstBAI	YACGTR	1 cut(s)	1696
BstBI	TTCGAA	1 cut(s)	1423
BstC8I	GCNNGC	8 cut(s)	1160, 1217, 1903, 1914, 2002, 2274, 2547, 2666
BstDSI	CCRYGG	2 cut(s)	932, 2550
BstF5I	GGATG	5 cut(s)	1192, 1417, 1982, 2105, 2189
BstFNI	CGCG	1 cut(s)	142
BstH2I	RGCGCY	2 cut(s)	1027, 1480
BstHHI	GCGC	2 cut(s)	1026, 1479
BstKTI	GATC	6 cut(s)	295, 442, 622, 748, 983, 2296
BstMAI	GTCTC	3 cut(s)	139, 1754, 2021
BstMBI	GATC	6 cut(s)	292, 439, 619, 745, 980, 2293
BstNI	CCWGG	8 cut(s)	249, 359, 369, 1008, 1221, 1553, 2044, 2112
BstNSI	RCATGY	2 cut(s)	169, 817
BstSCI	CCNGG	9 cut(s)	247, 357, 367, 1006, 1219, 1256, 1551, 2042, 2110
BstSFI	CTRYAG	2 cut(s)	1536, 1706
BstSLI	GKGCMC	2 cut(s)	40, 1021
BstSNI	TACGTA	1 cut(s)	1696
BstUI	CGCG	1 cut(s)	142
BstV2I	GAAGAC	2 cut(s)	183, 1071
BstX2I	RGATCY	1 cut(s)	980
BstXI	CCANNNNNNTGG	2 cut(s)	2360, 2672
BstYI	RGATCY	1 cut(s)	980
Bsu36I	CCTNAGG	2 cut(s)	1182, 1515
BsuI	GTATCC	1 cut(s)	2269
BsuRI	GGCC	6 cut(s)	16, 937, 1060, 1158, 1884, 1916
BtgI	CCRYGG	2 cut(s)	932, 2550
BtsCI	GGATG	5 cut(s)	1192, 1417, 1982, 2105, 2189
BtsIMutI	CAGTG	1 cut(s)	1002
Cac8I	GCNNGC	8 cut(s)	1160, 1217, 1903, 1914, 2002, 2274, 2547, 2666
CaiI	CAGNNNCTG	1 cut(s)	1769
CfoI	GCGC	2 cut(s)	1026, 1479
Cfr10I	RCCGGY	1 cut(s)	1158
Cfr13I	GGNCC	7 cut(s)	14, 98, 245, 936, 1772, 1882, 1943
CseI	GACGC	2 cut(s)	1039, 1907
Csp6I	GTAC	8 cut(s)	5, 144, 372, 944, 1112, 1287, 1812, 2124
CviQI	GTAC	8 cut(s)	5, 144, 372, 944, 1112, 1287, 1812, 2124
DinI	GGCGCC	1 cut(s)	1478
DpnI	GATC	6 cut(s)	294, 441, 621, 747, 982, 2295
DpnII	GATC	6 cut(s)	292, 439, 619, 745, 980, 2293
DraI	TTTAAA	1 cut(s)	1267
EaeI	YGGCCR	1 cut(s)	1156
Eam1104I	CTCTTC	2 cut(s)	832, 1479
EarI	CTCTTC	2 cut(s)	832, 1479
Ecl136II	GAGCTC	1 cut(s)	2313
Eco105I	TACGTA	1 cut(s)	1696
Eco130I	CCWWGG	2 cut(s)	1290, 2550
Eco147I	AGGCCT	1 cut(s)	1060
Eco24I	GRGCYC	2 cut(s)	606, 2315
Eco31I	GGTCTC	1 cut(s)	2021
Eco32I	GATATC	1 cut(s)	1713
Eco47I	GGWCC	4 cut(s)	98, 245, 1772, 1943
Eco53kI	GAGCTC	1 cut(s)	2313
Eco57I	CTGAAG	2 cut(s)	680, 1083
Eco81I	CCTNAGG	2 cut(s)	1182, 1515
Eco88I	CYCGRG	2 cut(s)	458, 2625
EcoICRI	GAGCTC	1 cut(s)	2313
EcoRI	GAATTC	3 cut(s)	1079, 1888, 2038
EcoRII	CCWGG	8 cut(s)	247, 357, 367, 1006, 1219, 1551, 2042, 2110
EcoRV	GATATC	1 cut(s)	1713
EcoT14I	CCWWGG	2 cut(s)	1290, 2550
EcoT22I	ATGCAT	3 cut(s)	352, 1573, 2643
EcoT38I	GRGCYC	2 cut(s)	606, 2315
EgeI	GGCGCC	1 cut(s)	1478
EheI	GGCGCC	1 cut(s)	1478
ErhI	CCWWGG	2 cut(s)	1290, 2550
FalI	AAGNNNNNCTT	2 cut(s)	811, 843
FaqI	GGGAC	2 cut(s)	1780, 2061
FauI	CCCGC	1 cut(s)	1218
FbaI	TGATCA	2 cut(s)	619, 745
FblI	GTMKAC	1 cut(s)	1705
FokI	GGATG	5 cut(s)	1199, 1424, 1969, 2092, 2176
FriOI	GRGCYC	2 cut(s)	606, 2315
FspBI	CTAG	5 cut(s)	303, 1947, 1959, 2121, 2430
GlaI	GCGC	2 cut(s)	1025, 1478
GsaI	CCCAGC	1 cut(s)	739
GsuI	CTGGAG	2 cut(s)	1105, 1422
HaeII	RGCGCY	2 cut(s)	1027, 1480
HaeIII	GGCC	6 cut(s)	16, 937, 1060, 1158, 1884, 1916
HapII	CCGG	2 cut(s)	1159, 1258
HgaI	GACGC	2 cut(s)	1039, 1907
HhaI	GCGC	2 cut(s)	1026, 1479
Hin1I	GRCGYC	1 cut(s)	1477
Hin6I	GCGC	2 cut(s)	1024, 1477
HinP1I	GCGC	2 cut(s)	1024, 1477
HincII	GTYRAC	4 cut(s)	401, 612, 1418, 1526
HindII	GTYRAC	4 cut(s)	401, 612, 1418, 1526
HinfI	GANTC	9 cut(s)	223, 287, 463, 873, 967, 1425, 2101, 2137, 2303
HpaII	CCGG	2 cut(s)	1159, 1258
HphI	GGTGA	5 cut(s)	42, 129, 2157, 2238, 2297
Hpy166II	GTNNAC	9 cut(s)	101, 401, 612, 1019, 1418, 1526, 1706, 1975, 2534
Hpy188I	TCNGA	8 cut(s)	292, 468, 699, 1347, 1717, 1849, 2100, 2136
Hpy8I	GTNNAC	9 cut(s)	101, 401, 612, 1019, 1418, 1526, 1706, 1975, 2534
Hpy99I	CGWCG	1 cut(s)	130
HpyCH4III	ACNGT	8 cut(s)	432, 501, 1243, 1879, 2075, 2456, 2465, 2492
HpyCH4IV	ACGT	2 cut(s)	1695, 1971
HpySE526I	ACGT	2 cut(s)	1695, 1971
Hsp92I	GRCGYC	1 cut(s)	1477
HspAI	GCGC	2 cut(s)	1024, 1477
KasI	GGCGCC	1 cut(s)	1476
KpnI	GGTACC	2 cut(s)	8, 1290
KroI	GCCGGC	1 cut(s)	1158
KroNI	GCCGGC	1 cut(s)	1160
Ksp22I	TGATCA	2 cut(s)	619, 745
Kzo9I	GATC	6 cut(s)	292, 439, 619, 745, 980, 2293
LguI	GCTCTTC	1 cut(s)	1479
LmnI	GCTCC	5 cut(s)	337, 570, 601, 2661, 2684
LweI	GCATC	7 cut(s)	359, 772, 871, 1580, 1991, 2624, 2650
MaeI	CTAG	5 cut(s)	303, 1947, 1959, 2121, 2430
MaeII	ACGT	2 cut(s)	1695, 1971
MaeIII	GTNAC	4 cut(s)	155, 804, 2163, 2492
MalI	GATC	6 cut(s)	294, 441, 621, 747, 982, 2295
MbiI	CCGCTC	1 cut(s)	2687
MboI	GATC	6 cut(s)	292, 439, 619, 745, 980, 2293
MfeI	CAATTG	1 cut(s)	27
MflI	RGATCY	1 cut(s)	980
MhlI	GDGCHC	4 cut(s)	40, 606, 1021, 2315
Mly113I	GGCGCC	1 cut(s)	1477
MlyI	GAGTC	2 cut(s)	296, 2131
MmeI	TCCRAC	4 cut(s)	565, 579, 2373, 2587
Mph1103I	ATGCAT	3 cut(s)	352, 1573, 2643
MroNI	GCCGGC	1 cut(s)	1158
MroXI	GAANNNNTTC	1 cut(s)	2584
MseI	TTAA	9 cut(s)	201, 914, 1266, 1725, 2358, 2556, 2691, 2700, 2734
MslI	CAYNNNNRTG	4 cut(s)	164, 2009, 2232, 2447
MspI	CCGG	2 cut(s)	1159, 1258
MspR9I	CCNGG	9 cut(s)	249, 359, 369, 1008, 1221, 1258, 1553, 2044, 2112
MunI	CAATTG	1 cut(s)	27
Mva1269I	GAATGC	1 cut(s)	84
MvaI	CCWGG	8 cut(s)	249, 359, 369, 1008, 1221, 1553, 2044, 2112
MvnI	CGCG	1 cut(s)	142
NaeI	GCCGGC	1 cut(s)	1160
NarI	GGCGCC	1 cut(s)	1477
NciI	CCSGG	1 cut(s)	1258
NcoI	CCATGG	1 cut(s)	2550
NdeII	GATC	6 cut(s)	292, 439, 619, 745, 980, 2293
NgoMIV	GCCGGC	1 cut(s)	1158
NmeAIII	GCCGAG	3 cut(s)	1126, 1612, 1781
NmuCI	GTSAC	1 cut(s)	2163
NsiI	ATGCAT	3 cut(s)	352, 1573, 2643
NspI	RCATGY	2 cut(s)	169, 817
NspV	TTCGAA	1 cut(s)	1423
OliI	CACNNNNGTG	2 cut(s)	2009, 2232
PaeR7I	CTCGAG	2 cut(s)	458, 2625
PceI	AGGCCT	1 cut(s)	1060
PciI	ACATGT	1 cut(s)	813
PciSI	GCTCTTC	1 cut(s)	1479
PctI	GAATGC	1 cut(s)	84
PdiI	GCCGGC	1 cut(s)	1160
PdmI	GAANNNNTTC	1 cut(s)	2584
PfeI	GAWTC	7 cut(s)	223, 463, 873, 967, 1425, 2101, 2303
PflFI	GACNNNGTC	1 cut(s)	2538
PflMI	CCANNNNNTGG	2 cut(s)	32, 2111
PleI	GAGTC	2 cut(s)	295, 2131
PluTI	GGCGCC	1 cut(s)	1480
PpsI	GAGTC	2 cut(s)	295, 2131
Ppu21I	YACGTR	1 cut(s)	1696
PscI	ACATGT	1 cut(s)	813
PsiI	TTATAA	1 cut(s)	345
Psp124BI	GAGCTC	1 cut(s)	2315
Psp6I	CCWGG	8 cut(s)	247, 357, 367, 1006, 1219, 1551, 2042, 2110
PspFI	CCCAGC	1 cut(s)	735
PspGI	CCWGG	8 cut(s)	247, 357, 367, 1006, 1219, 1551, 2042, 2110
PspPI	GGNCC	7 cut(s)	14, 98, 245, 936, 1772, 1882, 1943
PstI	CTGCAG	1 cut(s)	1540
PstNI	CAGNNNCTG	1 cut(s)	1769
PsuI	RGATCY	1 cut(s)	980
PsyI	GACNNNGTC	1 cut(s)	2538
RsaI	GTAC	8 cut(s)	6, 145, 373, 945, 1113, 1288, 1813, 2125
RsaNI	GTAC	8 cut(s)	5, 144, 372, 944, 1112, 1287, 1812, 2124
RseI	CAYNNNNRTG	4 cut(s)	164, 2009, 2232, 2447
SacI	GAGCTC	1 cut(s)	2315
SapI	GCTCTTC	1 cut(s)	1479
SaqAI	TTAA	9 cut(s)	201, 914, 1266, 1725, 2358, 2556, 2691, 2700, 2734
Sau3AI	GATC	6 cut(s)	292, 439, 619, 745, 980, 2293
Sau96I	GGNCC	7 cut(s)	14, 98, 245, 936, 1772, 1882, 1943
ScaI	AGTACT	1 cut(s)	1813
SchI	GAGTC	2 cut(s)	296, 2131
ScrFI	CCNGG	9 cut(s)	249, 359, 369, 1008, 1221, 1258, 1553, 2044, 2112
SduI	GDGCHC	4 cut(s)	40, 606, 1021, 2315
SfaNI	GCATC	7 cut(s)	359, 772, 871, 1580, 1991, 2624, 2650
SfcI	CTRYAG	2 cut(s)	1536, 1706
SfoI	GGCGCC	1 cut(s)	1478
Sfr274I	CTCGAG	2 cut(s)	458, 2625
SfuI	TTCGAA	1 cut(s)	1423
SinI	GGWCC	4 cut(s)	98, 245, 1772, 1943
SlaI	CTCGAG	2 cut(s)	458, 2625
SmiMI	CAYNNNNRTG	4 cut(s)	164, 2009, 2232, 2447
SmlI	CTYRAG	4 cut(s)	458, 831, 2139, 2625
SmoI	CTYRAG	4 cut(s)	458, 831, 2139, 2625
SnaBI	TACGTA	1 cut(s)	1696
SseBI	AGGCCT	1 cut(s)	1060
SsiI	CCGC	7 cut(s)	17, 140, 716, 843, 959, 1225, 2687
SspDI	GGCGCC	1 cut(s)	1476
SspI	AATATT	1 cut(s)	1075
SspMI	CTAG	5 cut(s)	303, 1947, 1959, 2121, 2430
SstI	GAGCTC	1 cut(s)	2315
StuI	AGGCCT	1 cut(s)	1060
StyD4I	CCNGG	9 cut(s)	247, 357, 367, 1006, 1219, 1256, 1551, 2042, 2110
StyI	CCWWGG	2 cut(s)	1290, 2550
TaaI	ACNGT	8 cut(s)	432, 501, 1243, 1879, 2075, 2456, 2465, 2492
TaiI	ACGT	2 cut(s)	1698, 1974
TaqI	TCGA	8 cut(s)	459, 565, 1423, 1498, 1801, 2057, 2180, 2626
TatI	WGTACW	3 cut(s)	943, 1811, 2123
TauI	GCSGC	3 cut(s)	19, 718, 845
TfiI	GAWTC	7 cut(s)	223, 463, 873, 967, 1425, 2101, 2303
Tru1I	TTAA	9 cut(s)	201, 914, 1266, 1725, 2358, 2556, 2691, 2700, 2734
Tru9I	TTAA	9 cut(s)	201, 914, 1266, 1725, 2358, 2556, 2691, 2700, 2734
TscAI	CASTG	1 cut(s)	1002
TseFI	GTSAC	1 cut(s)	2163
Tsp45I	GTSAC	1 cut(s)	2163
TspGWI	ACGGA	1 cut(s)	114
TspRI	CASTG	1 cut(s)	1002
Tth111I	GACNNNGTC	1 cut(s)	2538
Van91I	CCANNNNNTGG	2 cut(s)	32, 2111
VneI	GTGCAC	1 cut(s)	1017
VpaK11BI	GGWCC	4 cut(s)	98, 245, 1772, 1943
XapI	RAATTY	9 cut(s)	70, 229, 469, 1079, 1091, 1888, 2029, 2038, 2242
XceI	RCATGY	2 cut(s)	169, 817
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2201, 2672
XhoI	CTCGAG	2 cut(s)	458, 2625
XmiI	GTMKAC	1 cut(s)	1705
XmnI	GAANNNNTTC	1 cut(s)	2584
XspI	CTAG	5 cut(s)	303, 1947, 1959, 2121, 2430
ZrmI	AGTACT	1 cut(s)	1813
Zsp2I	ATGCAT	3 cut(s)	352, 1573, 2643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.