Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0009217

Physical Location & Seq

Genomic Coordinates Reverse (-)

31790345 .. 31798345

Gene Structure 8001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00191290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2772 bp

ATGGTACCTTCGGGGCCGCCCAATCCAATTGGTGGTGCCCAGTCTGTTTCACCTTCGCTCTTGCGTTCAAATTCTGGAATGCTTGGAGGTCAAAATGGTCCGCTGGCTTCTCAGTCAGCTTTTCCATCGCTTGTCTCACCGCGTGCTCAATTCAGTAACATGAATATGCTTGGAAATGTAGCCAATGTGTCTTCTCTCCTTAATCAGTCTTTTGGAAACGGGATTCCGAATACAGGGCTTTCTGGTCCTGGTAGCAGCCATCGTGGAGGTATTGATACTGGGGCTGAGTCCGATCCACTTTCTAGTGTTGGCAATGGAATGGGTTTCAATGCTCCTTCATCTTATAATGCATCAAACCTGGCTAATCCCGGTACATCTGGTCAAGGTCAGGGTCAGGGTCATGGTCAACAATTTTCAAACCCTTCTGGTAATCAACTGTTGGCAGATCAACAACAGCAACAACTCGAGAATCAGAATTTTCAGCATAGTCAGCAGCAAATGCAACAGTTCTCTGCCCCTCACAACACACAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAATTTCAGGCAATTCGAGGGAGCTTAGCTGGTGTTGGACAAGTCAAGTTGGAGCCCCAGTTGACAAATGATCAACATGGACAGCAGCAGCAGCAGTTCCAGTCTCTGAGAGGTCTTGGTCAAGTGAAAATGGAACCTCAACAACTTCAGAACATGAGAAACTTACCGCCTGTAAAAGTGGAACCCCAGCATAATGATCAGTCATTGTATTTGCATCAACAACAGCAACAACAGCAGCAACAGCAACAGCAACAGCAACAGCAACAACAGCAGTTACTCAACATGTCAAGACACTCTTCTCAAGCTGCTGCTGCCCATATAAACCTTCTGCATCAGCAGAGATTCTTGCAGCTAACACAACAACACCAGCAACAGCAACTCTTAAAAGCAATGCCTCAGCCAAGGCCCCAAGTACAGCAGCAATTTCCGCAACAGAATCTCCCTATGAGATCTCCTGCAAAACCAGTGTATGAACCTGGAATGTGTGCACGGCGCTTGACGCATTATATGTATCAGCAACAACATAGGCCTGAAGACAATAATATTGAATTCTGGAGAAAATTTGTTGCCGAGTATTTTGTACCTCATGCCAAGAAGAAGTGGTGTGTTTCTATGTATGGAAGTGGCCGGCAGACAACTGGTGTTTTCCCTCAGGATGTATGGCATTGTGAGATATGCAATCGCAAGCCTGGGCGGGGCTTTGAAGCAACTGTTGAGGTTCTTCCCCGGCTATTTAAAATCAAGTATGAAAGTGGTACCTTGGAGGAACTTCTGTATGTTGATATGCCTCGTGAGTATCATAATTCATCTGGTCAGATTGTGCTGGACTATGCCAAAGCAATACAAGAAAGTGTTTTTGAGCAGCTTCGTGTTGTTCGGGATGGTCAACTTCGAATCGTGTTCTCTCCAGACTTGAAGATATGCTCTTGGGAGTTTTGTGCAAGGCGCCATGAAGAGCTTATCCCTCGAAGATTACTGATACCTCAGGTTAGTCAACTTGGGGCTGCAGCTCAAAAATACCAGGCTGCTACTCAAAATGCATCATCTAATTTATCTATTCCAGACATACAAAATAATTGTAATATGTTTGTATCGTCAGCTCGGCAGTTGGCAAAAACCCTGGAAGTGCCATTAGTAAATGATTTAGGCTATACAAAGAGATACGTAAGGTGTCTACAGATATCAGAAGTGGTTAATAGTATGAAGGACTTGATTGATTACAGCCGAGAGACAGGGACTGGACCTATGGAGAGCTTAGCCAAGTTTCCTCGAAGGACGAGTACTTCATCTGGGTTTCACAATCAAGCACAGCAGTCTGATGAACAAATGCAGCAGCAACAGCAACAGCAAACAGTGGGCCAGAATTTAAATGACACAAGCTCTGTGCAGGCCAATATGCAACTTGCTGTTAGTAATGGACCTAGTGGTATGGCTAGTGTAAATAATGTGAACACAGCATCCACATCTACCTCTGCAAGCACCATTGTGGGTCTCCTCCATCAAAATTCCATGAATTCCAGGCAACAGAGTTCGATGAATAATGCAAACAGTCCCTATGGAGGAAGTTCTGTTCAGATTCCATCCCCTGGTTCTTCTAGTACAATCCCTCAGACTCAAGCAAACCCTTCTCCATTCCAGTCACCAACACCCTCATCGAACAATCCATCCCAAACATCTCATGGTGCCTTGACAGCTACCAATCACATGAGTGCAGCAAATTCACCAGCAAATGTATCCATGCAACAGCCAGCCCTTTCTGGTGAGGCTGATCCAAGTGATTCCCAGAGCTCTGTCCACAAAATTATACAAGACATGATGATGTCCAACCAGCTTAATGGCTCAGGTAGTATGGTTGGTGTGGGTTCTCTGGGAAACGATGTGAAAAACATGAATGGGATTTTGTCTAGTAGCAACAATACAGGCATGAACGGTGGCAACTGTCTGTCGGGGAATGTCATGGGCAACAGTAACTCAGGTATGGGGGGTGGTGGATTTGGGAGTATGGGTGGACTTGGTCAGCCTGCCATGGTTAATGGAATTAGAGCTGCAATGGGAAATAATTCTGTTATGAATGGAAGGGTTGGAATGGCATCAATGGCTCGAGAACAAAGTATGCATCATCAACAGGATATAGGGAGCCAGCTACTTAGTGGGCTTGGAGCGGTTAATGGGTATAACAATCTTCAATTTGATTGGAAACATTCTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0010243 GO:0010272 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0035670 GO:0036293 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0046898 GO:0046982 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060090 GO:0060992 GO:0061458 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901363 GO:1901654 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM_bind

Protein Analysis

923

Amino Acids

100.48

Weight (kDa)

8.82

Isoelectric Point (pI)

57.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM_bind	PF01803	352 - 606	1.2e-67	LIM-domain binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43850 AT1G43850
fragaria_vesca	FvH4_2g14890
malus_domestica	MD05G1012000.v1.1 MD10G1012000.v1.1
prunus_persica	Prupe.8G017000_v2.0.a1 Prupe.8G017000_v2.0.a1 Prupe.8G017000_v2.0.a1
pyrus_communis	pycom05g00700 pycom10g00760
rosa_chinensis	RchiOBHm_Chr6g0277461
rosa_laevigata	RLG00000013299
rosa_multiflora	Rmu_co8465657.1_g000001 Rmu_sc0003910.1_g000012
rosa_roxburghii	Rroxscaffold_7G00191290
rosa_rugosa	Rorug06G0108400 Rorug06G0108500
rosa_samantha	Rh6AG219300 Rh6BG223200 Rh6CG225700 Rh6DG216000
rosa_wichuraiana	Rw6G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	345
Acc65I	GGTACC	2 cut(s)	4, 1316
AccB1I	GGYRCC	5 cut(s)	4, 35, 1316, 1506, 2243
AccB7I	CCANNNNNTGG	2 cut(s)	32, 2147
AccBSI	CCGCTC	1 cut(s)	2723
AccI	GTMKAC	1 cut(s)	1735
AccII	CGCG	1 cut(s)	142
AciI	CCGC	7 cut(s)	17, 101, 140, 728, 989, 1255, 2723
AclWI	GGATC	2 cut(s)	287, 2324
AcoI	YGGCCR	1 cut(s)	1186
AcsI	RAATTY	8 cut(s)	70, 475, 1109, 1121, 1924, 2065, 2074, 2278
AcuI	CTGAAG	2 cut(s)	692, 1113
AcyI	GRCGYC	1 cut(s)	1507
AdeI	CACNNNGTG	1 cut(s)	143
AfaI	GTAC	7 cut(s)	6, 373, 975, 1143, 1318, 1843, 2161
AfiI	CCNNNNNNNGG	5 cut(s)	32, 233, 1256, 2120, 2147
AflIII	ACRYGT	1 cut(s)	843
AgsI	TTSAA	7 cut(s)	69, 328, 417, 1109, 1265, 1477, 2747
AjnI	CCWGG	8 cut(s)	247, 357, 1036, 1249, 1581, 1680, 2078, 2146
AleI	CACNNNNGTG	2 cut(s)	2045, 2268
AloI	GAACNNNNNNTCC	6 cut(s)	2003, 2035, 2115, 2147, 2210, 2242
Alw21I	GWGCWC	3 cut(s)	148, 1051, 2351
Alw26I	GTCTC	4 cut(s)	139, 669, 1784, 2057
Alw44I	GTGCAC	1 cut(s)	1047
AlwI	GGATC	2 cut(s)	287, 2324
AlwNI	CAGNNNCTG	2 cut(s)	667, 1799
Ama87I	CYCGRG	2 cut(s)	464, 2661
AoxI	GGCC	6 cut(s)	14, 965, 1088, 1186, 1918, 1950
ApaLI	GTGCAC	1 cut(s)	1047
ApoI	RAATTY	8 cut(s)	70, 475, 1109, 1121, 1924, 2065, 2074, 2278
Asp700I	GAANNNNTTC	1 cut(s)	2620
Asp718I	GGTACC	2 cut(s)	4, 1316
AspLEI	GCGC	2 cut(s)	1056, 1509
AspS9I	GGNCC	7 cut(s)	14, 98, 245, 966, 1802, 1918, 1979
AsuC2I	CCSGG	2 cut(s)	369, 1288
AsuHPI	GGTGA	5 cut(s)	42, 129, 2193, 2274, 2333
AsuII	TTCGAA	1 cut(s)	1453
AvaI	CYCGRG	2 cut(s)	464, 2661
AvaII	GGWCC	4 cut(s)	98, 245, 1802, 1979
AxyI	CCTNAGG	2 cut(s)	1212, 1545
BaeGI	GKGCMC	2 cut(s)	40, 1051
BanI	GGYRCC	5 cut(s)	4, 35, 1316, 1506, 2243
BanII	GRGCYC	2 cut(s)	618, 2351
BarI	GAAGNNNNNNTAC	2 cut(s)	1825, 1857
BauI	CACGAG	1 cut(s)	1350
BbsI	GAAGAC	2 cut(s)	183, 1101
Bbv12I	GWGCWC	3 cut(s)	148, 1051, 2351
BbvCI	CCTCAGC	1 cut(s)	957
BccI	CCATC	6 cut(s)	133, 267, 1436, 2067, 2149, 2233
BceAI	ACGGC	1 cut(s)	1067
BciT130I	CCWGG	8 cut(s)	249, 359, 1038, 1251, 1583, 1682, 2080, 2148
BciVI	GTATCC	1 cut(s)	2305
BclI	TGATCA	2 cut(s)	631, 757
BcnI	CCSGG	2 cut(s)	369, 1288
BcoDI	GTCTC	4 cut(s)	139, 669, 1784, 2057
BfaI	CTAG	5 cut(s)	303, 1983, 1995, 2157, 2466
BfmI	CTRYAG	2 cut(s)	1566, 1736
BfoI	RGCGCY	2 cut(s)	1057, 1510
BfuI	GTATCC	1 cut(s)	2305
BglII	AGATCT	1 cut(s)	1010
BlpI	GCTNAGC	2 cut(s)	586, 1816
BmcAI	AGTACT	1 cut(s)	1843
Bme18I	GGWCC	4 cut(s)	98, 245, 1802, 1979
BmeT110I	CYCGRG	2 cut(s)	464, 2661
BmgT120I	GGNCC	7 cut(s)	14, 98, 245, 966, 1802, 1918, 1979
BmrI	ACTGGG	3 cut(s)	34, 288, 613
BmsI	GCATC	7 cut(s)	359, 784, 901, 1610, 2027, 2660, 2686
BmuI	ACTGGG	3 cut(s)	34, 288, 613
BpiI	GAAGAC	2 cut(s)	183, 1101
BpmI	CTGGAG	2 cut(s)	1135, 1452
Bpu10I	CCTNAGC	2 cut(s)	957, 2401
Bpu1102I	GCTNAGC	2 cut(s)	586, 1816
Bpu14I	TTCGAA	1 cut(s)	1453
BpuEI	CTTGAG	2 cut(s)	846, 2160
BpuMI	CCSGG	2 cut(s)	369, 1288
BsaAI	YACGTR	1 cut(s)	1726
BsaHI	GRCGYC	1 cut(s)	1507
BsaI	GGTCTC	1 cut(s)	2057
BsaJI	CCNNGG	7 cut(s)	962, 1250, 1286, 1320, 1680, 2146, 2586
BsaXI	ACNNNNNCTCC	6 cut(s)	605, 635, 984, 1014, 2551, 2581
Bsc4I	CCNNNNNNNGG	5 cut(s)	32, 233, 1256, 2120, 2147
Bse118I	RCCGGY	1 cut(s)	1188
Bse1I	ACTGG	8 cut(s)	40, 283, 619, 661, 1025, 1204, 1804, 2197
Bse21I	CCTNAGG	2 cut(s)	1212, 1545
Bse3DI	GCAATG	3 cut(s)	319, 957, 2616
BseBI	CCWGG	8 cut(s)	249, 359, 1038, 1251, 1583, 1682, 2080, 2148
BseDI	CCNNGG	7 cut(s)	962, 1250, 1286, 1320, 1680, 2146, 2586
BseGI	GGATG	5 cut(s)	1222, 1447, 2018, 2141, 2225
BseLI	CCNNNNNNNGG	5 cut(s)	32, 233, 1256, 2120, 2147
BseMI	GCAATG	3 cut(s)	319, 957, 2616
BseMII	CTCAG	9 cut(s)	125, 276, 659, 971, 1226, 1559, 2183, 2415, 2547
BseNI	ACTGG	8 cut(s)	40, 283, 619, 661, 1025, 1204, 1804, 2197
BseRI	GAGGAG	1 cut(s)	2045
BseSI	GKGCMC	2 cut(s)	40, 1051
BseYI	CCCAGC	1 cut(s)	747
BsgI	GTGCAG	2 cut(s)	1967, 2292
Bsh1236I	CGCG	1 cut(s)	142
BshFI	GGCC	6 cut(s)	16, 967, 1090, 1188, 1920, 1952
BshNI	GGYRCC	5 cut(s)	4, 35, 1316, 1506, 2243
BsiHKAI	GWGCWC	3 cut(s)	148, 1051, 2351
BsiHKCI	CYCGRG	2 cut(s)	464, 2661
BsiSI	CCGG	3 cut(s)	369, 1189, 1288
BslFI	GGGAC	2 cut(s)	1810, 2097
BslI	CCNNNNNNNGG	5 cut(s)	32, 233, 1256, 2120, 2147
BsmAI	GTCTC	4 cut(s)	139, 669, 1784, 2057
BsmFI	GGGAC	2 cut(s)	1810, 2097
BsmI	GAATGC	1 cut(s)	84
BsnI	GGCC	6 cut(s)	16, 967, 1090, 1188, 1920, 1952
Bso31I	GGTCTC	1 cut(s)	2057
BsoBI	CYCGRG	2 cut(s)	464, 2661
Bsp119I	TTCGAA	1 cut(s)	1453
Bsp1286I	GDGCHC	5 cut(s)	40, 148, 618, 1051, 2351
Bsp143I	GATC	6 cut(s)	292, 445, 631, 757, 1010, 2329
Bsp1720I	GCTNAGC	2 cut(s)	586, 1816
Bsp19I	CCATGG	1 cut(s)	2586
BspACI	CCGC	7 cut(s)	17, 101, 140, 728, 989, 1255, 2723
BspANI	GGCC	6 cut(s)	16, 967, 1090, 1188, 1920, 1952
BspCNI	CTCAG	9 cut(s)	124, 277, 660, 970, 1225, 1558, 2182, 2414, 2546
BspFNI	CGCG	1 cut(s)	142
BspMAI	CTGCAG	1 cut(s)	1570
BspPI	GGATC	2 cut(s)	287, 2324
BspQI	GCTCTTC	1 cut(s)	1509
BspT104I	TTCGAA	1 cut(s)	1453
BspT107I	GGYRCC	5 cut(s)	4, 35, 1316, 1506, 2243
BspTNI	GGTCTC	1 cut(s)	2057
BsrBI	CCGCTC	1 cut(s)	2723
BsrDI	GCAATG	3 cut(s)	319, 957, 2616
BsrFI	RCCGGY	1 cut(s)	1188
BsrI	ACTGG	8 cut(s)	40, 283, 619, 661, 1025, 1204, 1804, 2197
BssAI	RCCGGY	1 cut(s)	1188
BssECI	CCNNGG	7 cut(s)	962, 1250, 1286, 1320, 1680, 2146, 2586
BssMI	GATC	6 cut(s)	292, 445, 631, 757, 1010, 2329
BssNI	GRCGYC	1 cut(s)	1507
BssSI	CACGAG	1 cut(s)	1350
BssT1I	CCWWGG	3 cut(s)	962, 1320, 2586
Bst2BI	CACGAG	1 cut(s)	1350
Bst2UI	CCWGG	8 cut(s)	249, 359, 1038, 1251, 1583, 1682, 2080, 2148
Bst4CI	ACNGT	8 cut(s)	438, 507, 1273, 1915, 2111, 2492, 2501, 2528
Bst6I	CTCTTC	2 cut(s)	862, 1509
BstACI	GRCGYC	1 cut(s)	1507
BstAPI	GCANNNNNTGC	1 cut(s)	499
BstBAI	YACGTR	1 cut(s)	1726
BstBI	TTCGAA	1 cut(s)	1453
BstC8I	GCNNGC	9 cut(s)	105, 144, 1190, 1247, 1950, 2038, 2310, 2583, 2702
BstDSI	CCRYGG	1 cut(s)	2586
BstF5I	GGATG	5 cut(s)	1222, 1447, 2018, 2141, 2225
BstFNI	CGCG	1 cut(s)	142
BstH2I	RGCGCY	2 cut(s)	1057, 1510
BstHHI	GCGC	2 cut(s)	1056, 1509
BstKTI	GATC	6 cut(s)	295, 448, 634, 760, 1013, 2332
BstMAI	GTCTC	4 cut(s)	139, 669, 1784, 2057
BstMBI	GATC	6 cut(s)	292, 445, 631, 757, 1010, 2329
BstNI	CCWGG	8 cut(s)	249, 359, 1038, 1251, 1583, 1682, 2080, 2148
BstNSI	RCATGY	1 cut(s)	847
BstSFI	CTRYAG	2 cut(s)	1566, 1736
BstSLI	GKGCMC	2 cut(s)	40, 1051
BstSNI	TACGTA	1 cut(s)	1726
BstUI	CGCG	1 cut(s)	142
BstV2I	GAAGAC	2 cut(s)	183, 1101
BstX2I	RGATCY	1 cut(s)	1010
BstXI	CCANNNNNNTGG	1 cut(s)	2396
BstYI	RGATCY	1 cut(s)	1010
Bsu36I	CCTNAGG	2 cut(s)	1212, 1545
BsuI	GTATCC	1 cut(s)	2305
BsuRI	GGCC	6 cut(s)	16, 967, 1090, 1188, 1920, 1952
BtgI	CCRYGG	1 cut(s)	2586
BtgZI	GCGATG	1 cut(s)	111
BtsCI	GGATG	5 cut(s)	1222, 1447, 2018, 2141, 2225
BtsIMutI	CAGTG	2 cut(s)	1032, 1920
Cac8I	GCNNGC	9 cut(s)	105, 144, 1190, 1247, 1950, 2038, 2310, 2583, 2702
CaiI	CAGNNNCTG	2 cut(s)	667, 1799
CfoI	GCGC	2 cut(s)	1056, 1509
Cfr10I	RCCGGY	1 cut(s)	1188
Cfr13I	GGNCC	7 cut(s)	14, 98, 245, 966, 1802, 1918, 1979
CseI	GACGC	1 cut(s)	1069
Csp6I	GTAC	7 cut(s)	5, 372, 974, 1142, 1317, 1842, 2160
CviQI	GTAC	7 cut(s)	5, 372, 974, 1142, 1317, 1842, 2160
DinI	GGCGCC	1 cut(s)	1508
DpnI	GATC	6 cut(s)	294, 447, 633, 759, 1012, 2331
DpnII	GATC	6 cut(s)	292, 445, 631, 757, 1010, 2329
DraI	TTTAAA	2 cut(s)	1297, 1929
DraIII	CACNNNGTG	1 cut(s)	143
EaeI	YGGCCR	1 cut(s)	1186
Eam1104I	CTCTTC	2 cut(s)	862, 1509
EarI	CTCTTC	2 cut(s)	862, 1509
Ecl136II	GAGCTC	1 cut(s)	2349
Eco105I	TACGTA	1 cut(s)	1726
Eco130I	CCWWGG	3 cut(s)	962, 1320, 2586
Eco147I	AGGCCT	1 cut(s)	1090
Eco24I	GRGCYC	2 cut(s)	618, 2351
Eco31I	GGTCTC	1 cut(s)	2057
Eco32I	GATATC	1 cut(s)	1743
Eco47I	GGWCC	4 cut(s)	98, 245, 1802, 1979
Eco53kI	GAGCTC	1 cut(s)	2349
Eco57I	CTGAAG	2 cut(s)	692, 1113
Eco81I	CCTNAGG	2 cut(s)	1212, 1545
Eco88I	CYCGRG	2 cut(s)	464, 2661
EcoICRI	GAGCTC	1 cut(s)	2349
EcoO109I	RGGNCCY	1 cut(s)	966
EcoRI	GAATTC	2 cut(s)	1109, 2074
EcoRII	CCWGG	8 cut(s)	247, 357, 1036, 1249, 1581, 1680, 2078, 2146
EcoRV	GATATC	1 cut(s)	1743
EcoT14I	CCWWGG	3 cut(s)	962, 1320, 2586
EcoT22I	ATGCAT	3 cut(s)	352, 1603, 2679
EcoT38I	GRGCYC	2 cut(s)	618, 2351
EgeI	GGCGCC	1 cut(s)	1508
EheI	GGCGCC	1 cut(s)	1508
ErhI	CCWWGG	3 cut(s)	962, 1320, 2586
FalI	AAGNNNNNCTT	2 cut(s)	841, 873
FaqI	GGGAC	2 cut(s)	1810, 2097
FauI	CCCGC	1 cut(s)	1248
FbaI	TGATCA	2 cut(s)	631, 757
FblI	GTMKAC	1 cut(s)	1735
FokI	GGATG	5 cut(s)	1229, 1454, 2005, 2128, 2212
FriOI	GRGCYC	2 cut(s)	618, 2351
FspBI	CTAG	5 cut(s)	303, 1983, 1995, 2157, 2466
GlaI	GCGC	2 cut(s)	1055, 1508
GsaI	CCCAGC	1 cut(s)	751
GsuI	CTGGAG	2 cut(s)	1135, 1452
HaeII	RGCGCY	2 cut(s)	1057, 1510
HaeIII	GGCC	6 cut(s)	16, 967, 1090, 1188, 1920, 1952
HapII	CCGG	3 cut(s)	369, 1189, 1288
HgaI	GACGC	1 cut(s)	1069
HhaI	GCGC	2 cut(s)	1056, 1509
Hin1I	GRCGYC	1 cut(s)	1507
Hin6I	GCGC	2 cut(s)	1054, 1507
HinP1I	GCGC	2 cut(s)	1054, 1507
HincII	GTYRAC	4 cut(s)	407, 624, 1448, 1556
HindII	GTYRAC	4 cut(s)	407, 624, 1448, 1556
HinfI	GANTC	9 cut(s)	223, 287, 469, 903, 997, 1455, 2137, 2173, 2339
HpaII	CCGG	3 cut(s)	369, 1189, 1288
HphI	GGTGA	5 cut(s)	42, 129, 2193, 2274, 2333
Hpy166II	GTNNAC	9 cut(s)	407, 624, 1049, 1448, 1556, 1736, 2011, 2356, 2570
Hpy8I	GTNNAC	9 cut(s)	407, 624, 1049, 1448, 1556, 1736, 2011, 2356, 2570
HpyAV	CCTTC	9 cut(s)	18, 63, 345, 432, 896, 1759, 1827, 2196, 2631
HpyCH4III	ACNGT	8 cut(s)	438, 507, 1273, 1915, 2111, 2492, 2501, 2528
HpyCH4IV	ACGT	1 cut(s)	1725
HpySE526I	ACGT	1 cut(s)	1725
Hsp92I	GRCGYC	1 cut(s)	1507
HspAI	GCGC	2 cut(s)	1054, 1507
KasI	GGCGCC	1 cut(s)	1506
KpnI	GGTACC	2 cut(s)	8, 1320
KroI	GCCGGC	1 cut(s)	1188
KroNI	GCCGGC	1 cut(s)	1190
Ksp22I	TGATCA	2 cut(s)	631, 757
Kzo9I	GATC	6 cut(s)	292, 445, 631, 757, 1010, 2329
LguI	GCTCTTC	1 cut(s)	1509
LmnI	GCTCC	5 cut(s)	337, 582, 613, 2697, 2720
LweI	GCATC	7 cut(s)	359, 784, 901, 1610, 2027, 2660, 2686
MaeI	CTAG	5 cut(s)	303, 1983, 1995, 2157, 2466
MaeII	ACGT	1 cut(s)	1725
MaeIII	GTNAC	4 cut(s)	155, 834, 2199, 2528
MalI	GATC	6 cut(s)	294, 447, 633, 759, 1012, 2331
MbiI	CCGCTC	1 cut(s)	2723
MboI	GATC	6 cut(s)	292, 445, 631, 757, 1010, 2329
MfeI	CAATTG	1 cut(s)	27
MflI	RGATCY	1 cut(s)	1010
MhlI	GDGCHC	5 cut(s)	40, 148, 618, 1051, 2351
Mly113I	GGCGCC	1 cut(s)	1507
MlyI	GAGTC	2 cut(s)	296, 2167
MmeI	TCCRAC	4 cut(s)	577, 591, 2409, 2623
Mph1103I	ATGCAT	3 cut(s)	352, 1603, 2679
MroNI	GCCGGC	1 cut(s)	1188
MroXI	GAANNNNTTC	1 cut(s)	2620
MseI	TTAA	9 cut(s)	201, 944, 1296, 1755, 1928, 2394, 2592, 2727, 2770
MslI	CAYNNNNRTG	4 cut(s)	164, 2045, 2268, 2378
MspA1I	CMGCKG	1 cut(s)	103
MspI	CCGG	3 cut(s)	369, 1189, 1288
MunI	CAATTG	1 cut(s)	27
Mva1269I	GAATGC	1 cut(s)	84
MvaI	CCWGG	8 cut(s)	249, 359, 1038, 1251, 1583, 1682, 2080, 2148
MvnI	CGCG	1 cut(s)	142
NaeI	GCCGGC	1 cut(s)	1190
NarI	GGCGCC	1 cut(s)	1507
NciI	CCSGG	2 cut(s)	369, 1288
NcoI	CCATGG	1 cut(s)	2586
NdeII	GATC	6 cut(s)	292, 445, 631, 757, 1010, 2329
NgoMIV	GCCGGC	1 cut(s)	1188
NmeAIII	GCCGAG	3 cut(s)	1156, 1642, 1811
NmuCI	GTSAC	1 cut(s)	2199
NsiI	ATGCAT	3 cut(s)	352, 1603, 2679
NspI	RCATGY	1 cut(s)	847
NspV	TTCGAA	1 cut(s)	1453
OliI	CACNNNNGTG	2 cut(s)	2045, 2268
PaeR7I	CTCGAG	2 cut(s)	464, 2661
PceI	AGGCCT	1 cut(s)	1090
PciI	ACATGT	1 cut(s)	843
PciSI	GCTCTTC	1 cut(s)	1509
PctI	GAATGC	1 cut(s)	84
PdiI	GCCGGC	1 cut(s)	1190
PdmI	GAANNNNTTC	1 cut(s)	2620
PfeI	GAWTC	7 cut(s)	223, 469, 903, 997, 1455, 2137, 2339
PflFI	GACNNNGTC	1 cut(s)	2574
PflMI	CCANNNNNTGG	2 cut(s)	32, 2147
PleI	GAGTC	2 cut(s)	295, 2167
PluTI	GGCGCC	1 cut(s)	1510
PpsI	GAGTC	2 cut(s)	295, 2167
Ppu21I	YACGTR	1 cut(s)	1726
PscI	ACATGT	1 cut(s)	843
PsiI	TTATAA	1 cut(s)	345
Psp124BI	GAGCTC	1 cut(s)	2351
Psp6I	CCWGG	8 cut(s)	247, 357, 1036, 1249, 1581, 1680, 2078, 2146
PspFI	CCCAGC	1 cut(s)	747
PspGI	CCWGG	8 cut(s)	247, 357, 1036, 1249, 1581, 1680, 2078, 2146
PspPI	GGNCC	7 cut(s)	14, 98, 245, 966, 1802, 1918, 1979
PstI	CTGCAG	1 cut(s)	1570
PstNI	CAGNNNCTG	2 cut(s)	667, 1799
PsuI	RGATCY	1 cut(s)	1010
PsyI	GACNNNGTC	1 cut(s)	2574
RsaI	GTAC	7 cut(s)	6, 373, 975, 1143, 1318, 1843, 2161
RsaNI	GTAC	7 cut(s)	5, 372, 974, 1142, 1317, 1842, 2160
RseI	CAYNNNNRTG	4 cut(s)	164, 2045, 2268, 2378
SacI	GAGCTC	1 cut(s)	2351
SapI	GCTCTTC	1 cut(s)	1509
SaqAI	TTAA	9 cut(s)	201, 944, 1296, 1755, 1928, 2394, 2592, 2727, 2770
Sau3AI	GATC	6 cut(s)	292, 445, 631, 757, 1010, 2329
Sau96I	GGNCC	7 cut(s)	14, 98, 245, 966, 1802, 1918, 1979
ScaI	AGTACT	1 cut(s)	1843
SchI	GAGTC	2 cut(s)	296, 2167
SduI	GDGCHC	5 cut(s)	40, 148, 618, 1051, 2351
SfaNI	GCATC	7 cut(s)	359, 784, 901, 1610, 2027, 2660, 2686
SfcI	CTRYAG	2 cut(s)	1566, 1736
SfoI	GGCGCC	1 cut(s)	1508
Sfr274I	CTCGAG	2 cut(s)	464, 2661
SfuI	TTCGAA	1 cut(s)	1453
SinI	GGWCC	4 cut(s)	98, 245, 1802, 1979
SlaI	CTCGAG	2 cut(s)	464, 2661
SmiI	ATTTAAAT	1 cut(s)	1929
SmiMI	CAYNNNNRTG	4 cut(s)	164, 2045, 2268, 2378
SmlI	CTYRAG	4 cut(s)	464, 861, 2175, 2661
SmoI	CTYRAG	4 cut(s)	464, 861, 2175, 2661
SnaBI	TACGTA	1 cut(s)	1726
SseBI	AGGCCT	1 cut(s)	1090
SsiI	CCGC	7 cut(s)	17, 101, 140, 728, 989, 1255, 2723
SspDI	GGCGCC	1 cut(s)	1506
SspI	AATATT	1 cut(s)	1105
SspMI	CTAG	5 cut(s)	303, 1983, 1995, 2157, 2466
SstI	GAGCTC	1 cut(s)	2351
StuI	AGGCCT	1 cut(s)	1090
StyI	CCWWGG	3 cut(s)	962, 1320, 2586
SwaI	ATTTAAAT	1 cut(s)	1929
TaaI	ACNGT	8 cut(s)	438, 507, 1273, 1915, 2111, 2492, 2501, 2528
TaiI	ACGT	1 cut(s)	1728
TaqI	TCGA	8 cut(s)	465, 577, 1453, 1528, 1831, 2093, 2216, 2662
TatI	WGTACW	3 cut(s)	973, 1841, 2159
TauI	GCSGC	1 cut(s)	19
TfiI	GAWTC	7 cut(s)	223, 469, 903, 997, 1455, 2137, 2339
Tru1I	TTAA	9 cut(s)	201, 944, 1296, 1755, 1928, 2394, 2592, 2727, 2770
Tru9I	TTAA	9 cut(s)	201, 944, 1296, 1755, 1928, 2394, 2592, 2727, 2770
TscAI	CASTG	2 cut(s)	1032, 1920
TseFI	GTSAC	1 cut(s)	2199
Tsp45I	GTSAC	1 cut(s)	2199
TspRI	CASTG	2 cut(s)	1032, 1920
Tth111I	GACNNNGTC	1 cut(s)	2574
Van91I	CCANNNNNTGG	2 cut(s)	32, 2147
VneI	GTGCAC	1 cut(s)	1047
VpaK11BI	GGWCC	4 cut(s)	98, 245, 1802, 1979
XapI	RAATTY	8 cut(s)	70, 475, 1109, 1121, 1924, 2065, 2074, 2278
XceI	RCATGY	1 cut(s)	847
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2237, 2708
XhoI	CTCGAG	2 cut(s)	464, 2661
XmiI	GTMKAC	1 cut(s)	1735
XmnI	GAANNNNTTC	1 cut(s)	2620
XspI	CTAG	5 cut(s)	303, 1983, 1995, 2157, 2466
ZrmI	AGTACT	1 cut(s)	1843
Zsp2I	ATGCAT	3 cut(s)	352, 1603, 2679

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.