Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009217

Physical Location & Seq

Genomic Coordinates Reverse (-)

14687045 .. 14687444

Gene Structure 400 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0108500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGCTAGTTTGTCAGCATATCAGGGTTGGTTTTGAAGGCCACGACGGGGCAATTTTCCTAGACCAAGACGGCGATATGGTGGTGTGCCGGAGAAAAACCGCCCTATCTGAGAAGGCGGAGGAGAAGAAGGAGAAGGCAGTGTGCGGTAAGCCTAAGGAGGCGGTTCGTGAGTTTTTGGAGATGGAGGAGGCTGGTGTGAGGGCAAATGAGGTGACTGTAGTGGCGGTTCTTAAGGCTTGTGCTGATTTGGATCGAAGAGGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0010243 GO:0010272 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0035670 GO:0036293 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0046898 GO:0046982 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060090 GO:0060992 GO:0061458 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901363 GO:1901654 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM_bind

Protein Analysis

88

Amino Acids

9.79

Weight (kDa)

6.12

Isoelectric Point (pI)

35.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43850 AT1G43850
fragaria_vesca	FvH4_2g14890
malus_domestica	MD05G1012000.v1.1 MD10G1012000.v1.1
prunus_persica	Prupe.8G017000_v2.0.a1 Prupe.8G017000_v2.0.a1 Prupe.8G017000_v2.0.a1
pyrus_communis	pycom05g00700 pycom10g00760
rosa_chinensis	RchiOBHm_Chr6g0277461
rosa_laevigata	RLG00000013299
rosa_multiflora	Rmu_co8465657.1_g000001 Rmu_sc0003910.1_g000012
rosa_roxburghii	Rroxscaffold_7G00191290
rosa_rugosa	Rorug06G0108400 Rorug06G0108500
rosa_samantha	Rh6AG219300 Rh6BG223200 Rh6CG225700 Rh6DG216000
rosa_wichuraiana	Rw6G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	99, 116, 144, 161, 224
AclWI	GGATC	1 cut(s)	258
AfiI	CCNNNNNNNGG	1 cut(s)	46
AflII	CTTAAG	1 cut(s)	230
AgsI	TTSAA	1 cut(s)	35
AlwI	GGATC	1 cut(s)	258
AoxI	GGCC	1 cut(s)	37
AsuHPI	GGTGA	1 cut(s)	223
AxyI	CCTNAGG	1 cut(s)	153
BccI	CCATC	1 cut(s)	175
BceAI	ACGGC	1 cut(s)	85
BfaI	CTAG	2 cut(s)	5, 59
BfmI	CTRYAG	1 cut(s)	216
BfrI	CTTAAG	1 cut(s)	230
BsaBI	GATNNNNATC	1 cut(s)	249
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
Bse21I	CCTNAGG	1 cut(s)	153
Bse8I	GATNNNNATC	1 cut(s)	249
BseJI	GATNNNNATC	1 cut(s)	249
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseMII	CTCAG	1 cut(s)	99
BseRI	GAGGAG	2 cut(s)	134, 200
BshFI	GGCC	1 cut(s)	39
BsiSI	CCGG	1 cut(s)	88
BslI	CCNNNNNNNGG	1 cut(s)	46
BsnI	GGCC	1 cut(s)	39
Bsp143I	GATC	1 cut(s)	250
BspACI	CCGC	5 cut(s)	99, 116, 144, 161, 224
BspANI	GGCC	1 cut(s)	39
BspCNI	CTCAG	1 cut(s)	100
BspPI	GGATC	1 cut(s)	258
BspTI	CTTAAG	1 cut(s)	230
BssMI	GATC	1 cut(s)	250
Bst4CI	ACNGT	1 cut(s)	217
Bst6I	CTCTTC	1 cut(s)	250
BstAFI	CTTAAG	1 cut(s)	230
BstDEI	CTNAG	2 cut(s)	108, 153
BstKTI	GATC	1 cut(s)	253
BstMBI	GATC	1 cut(s)	250
BstSFI	CTRYAG	1 cut(s)	216
Bsu36I	CCTNAGG	1 cut(s)	153
BsuRI	GGCC	1 cut(s)	39
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	144
CviJI	RGCY	4 cut(s)	39, 151, 191, 236
CviKI_1	RGCY	4 cut(s)	39, 151, 191, 236
DdeI	CTNAG	2 cut(s)	108, 153
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
Eam1104I	CTCTTC	1 cut(s)	250
EarI	CTCTTC	1 cut(s)	250
EciI	GGCGGA	1 cut(s)	131
Eco81I	CCTNAGG	1 cut(s)	153
FaiI	YATR	2 cut(s)	18, 77
FspBI	CTAG	2 cut(s)	5, 59
HaeIII	GGCC	1 cut(s)	39
HapII	CCGG	1 cut(s)	88
HpaII	CCGG	1 cut(s)	88
HphI	GGTGA	1 cut(s)	223
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	1 cut(s)	167
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	4 cut(s)	29, 106, 121, 127
HpyCH4III	ACNGT	1 cut(s)	217
HpyF3I	CTNAG	2 cut(s)	108, 153
Kzo9I	GATC	1 cut(s)	250
LpnPI	CCDG	3 cut(s)	7, 101, 177
MaeI	CTAG	2 cut(s)	5, 59
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	1 cut(s)	252
MboI	GATC	1 cut(s)	250
MboII	GAAGA	2 cut(s)	136, 267
MluCI	AATT	1 cut(s)	51
MnlI	CCTC	7 cut(s)	112, 151, 178, 181, 192, 202, 251
MseI	TTAA	1 cut(s)	231
MspCI	CTTAAG	1 cut(s)	230
MspI	CCGG	1 cut(s)	88
NdeII	GATC	1 cut(s)	250
NmuCI	GTSAC	1 cut(s)	211
PsrI	GAACNNNNNNTAC	2 cut(s)	210, 242
SaqAI	TTAA	1 cut(s)	231
Sau3AI	GATC	1 cut(s)	250
SetI	ASST	1 cut(s)	213
SfcI	CTRYAG	1 cut(s)	216
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
Sse9I	AATT	1 cut(s)	51
SsiI	CCGC	5 cut(s)	99, 116, 144, 161, 224
SspMI	CTAG	2 cut(s)	5, 59
TaaI	ACNGT	1 cut(s)	217
TaqI	TCGA	1 cut(s)	253
TasI	AATT	1 cut(s)	51
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TscAI	CASTG	1 cut(s)	144
TseFI	GTSAC	1 cut(s)	211
Tsp45I	GTSAC	1 cut(s)	211
TspRI	CASTG	1 cut(s)	144
Vha464I	CTTAAG	1 cut(s)	230
XspI	CTAG	2 cut(s)	5, 59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.