Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0009217

Physical Location & Seq

Genomic Coordinates Reverse (-)

825341 .. 832171

Gene Structure 6831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g00760.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2733 bp

ATGGTACCTTCGGGGTCGTCCACTCCAATTGGTGGTGCCCAGTCTGTTTCGCCTTCACTTTTGCGTTCGAATTCTGGAATGTTGGGAGGTCAAGGTTCCCAGTCGGCTTTTCCCTCACTTGCCTCACCACGTACTCAATACGGTAATATGAATATGCTTGGCAATGTAGCCAATGTGTCTTCTCTCCTTAGTCAGTCATATGGAAATGGAATTTCAAATCCGGGCCTCTCTGGTCCTGGTAGCAGCCAACGCGGAGTTATGGATACTGGTGCTGAATCGGATCCACTTTCTGGTGTTGGCAATGGAATGGGTTTCAGTGCACCTTCTTCATCATATGGTGCATCAAACATGGCTAATCCTGGTACGTCTGGGCAAGGGCAAGGGCAACAATTTTCAAACCCGTCTGGTAACCAACTGTTGACAGAACAACAGCAGCAGCAACTTGAAACACAGAATTTCCAGCATGGTCAGCAGCCAATGCAACAGTTCTCTTCCCCTCACAGTACGCAGCAGCAGCAACACCAATTTCAGGCTATTCGAGGAGGCTTAGCTGGTGTTGGGTCGGTAAAGTTAGAGCCCCAATTGACAAATGATCAACATGGACAGCAGCAGCAGTTGCAGTCTTTAAGGAGCCTTGGTTCAGTGAAAATGGAACCACAGCAACTTCAAACAATGAGGAGCTTGCCACCTGTAAAATTGGAACCCCAACATTCCGATCAGCCATTGTTTTTGCATCAACAGCAGCAACAACAACAGCAACAACAACAAATCCTCCACATGTCAAGGCAGTCTTCTCAGAATGCTGCTGCCCAGATGAACATTATGCATCAGCAGAGATTATTGCAGTTACAACAACACCATCAACAGCAACATAACCAGCAACAGCAACAACACCAGCAACACCAGCAGCAGCAATTTTTGAAAGCAATGCCTCAACAGCGCCCCCAGTTACAGCAGCAGTTTCCACAGCAGAATCTGCCCATGAGATCTCCTGCAAAACCAGTATATGAGCCTGGAATGTGTGCTCAGCGTTTGACACATTATATGTATCAGCAACAACATAGGCCTGAAGACAACAACATTGAGTTCTGGAGAAAATTTGTTGCTGAATATTTTGTACCCCATGCGAAGAAGAAGTGGTGTGTTTCTATGTATGGAACTGGCCGACAAACAACTGGCGTTTTTCCTCAGGATGTATGGCACTGTGAAATATGCAATCGCAAGCCTGGGCGTGGCTTTGAAGCGACCGTTGAGGTTCTTCCCCGGCTTTTTAAAATCAAGTATGAAAGTGGTACTTTGGAGGAGCTTCTTTATGTTGATATGCCGCGTGAGTATCATAATTCATCTGGCCAGATTGTGTTGGACTATGCTAAAGCGATACAAGAAAGTGTTTTTGAGCAACTTCGTGTTGTTCGGGATGGTCAACTTCGTATAGTATTCTCTCCAGATCTGAAGATATGCTCTTGGGAATTTTGTGCAAGGCGCCATGAAGAGCTTATCCCTCGAAGATTACTGATACCTCAGGTTAGTCAGCTTGGTGCTGCAGCCCAAAAATACCAGGCTGCTACTCAAAATGCATCATCCAACATATCTCTTCCAGAGATACAAAGTAATTGTAATATGTTTGTATCGTCAGCTCGACAGTTGGCCAAAACCTTGGAAGTGCCATTAGTAAATGATTTAGGTTATACAAAGCGATATGTGAGGTGTCTTCAGATATCAGAAGTAGTTAATAGTATGAAAGACTTGATTGATTACAGCCGAGAGACGGGGACTGGACCTATGGAGAGCTTGGCCAAGTTTCCTCGAAGGACGAGTGCTTCGTCTGGCTTTCACAGTCAAGCACAGCAGTCCGAGGAGCAAATGCAGCAGCAACAGCAACAACAAACGATTGGCCAGAATTCAAACGGAGATCCAGGCTCTGTCCAGGCCGCCGCTACACAAATTGCTGTCAGTAATGGTATTGCGAGTGTAAATAATGCTCCAAACACAGCATCCACATCTACCTCTGCAAGCACCATTGTTGGGCTCCTCCATCAGAATTCAATGAATTCCAGACAGCAAAGTTCTATGAATAACACAAACAGTCCCTATGGAGGAAGTTCTGTTCAGATTCCATCCCCTGTTTCTGCTAGTGCAATCCCGCAGGCGCAACCAAACCCTTCTCCATTCCAGTCACCAACACCCTCATCAAATAATCCTTCACAAATATCTCATGGTGCCATGACAGCTGCCAATCACATGAGTACAGCAAATTCACCAGCAAATATATCCGTGCAACACCCAACCCTATCTGGCGAGGCTGATCCAAGTGATTCCCAGAGCTCTGTCCACAAATTTGTACACGAAATGATGATGTCCAACCAACTTAACGGCCCAGGCAGTATGGTCGGTGCTGGTTCTTTGGGAAACGATGTGAAAAACATGAATGGGATTTTGTCAACAAGCAACAACATAGGATTGAACGGCATGACTAACAATAGCTCAGGCATTGGGGGTGCTGGATTTGGGAGTATGGGTGGCGGACTTGGTCAGCAGCCTGCCATGGCGAATGGAATAAGAGCAGCAATGGGAAATAATTCTGTTATGAATGGAAGGGTCGGAATGGCATCAATGGCTCGAGAACAAAGTATGCATCATCAACAACAGGATCTGGGGAACCAGTTACTTAGTGGGCTTGGAGCGGTGAACGGCTTTAATAATCTTCAATTTGAGTGGAAACATTCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0010243 GO:0010272 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0035670 GO:0036293 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0046898 GO:0046982 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060090 GO:0060992 GO:0061458 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901363 GO:1901654 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM_bind

Protein Analysis

911

Amino Acids

98.98

Weight (kDa)

8.76

Isoelectric Point (pI)

61.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43850 AT1G43850
fragaria_vesca	FvH4_2g14890
malus_domestica	MD05G1012000.v1.1 MD10G1012000.v1.1
prunus_persica	Prupe.8G017000_v2.0.a1 Prupe.8G017000_v2.0.a1 Prupe.8G017000_v2.0.a1
pyrus_communis	pycom05g00700 pycom10g00760
rosa_chinensis	RchiOBHm_Chr6g0277461
rosa_laevigata	RLG00000013299
rosa_multiflora	Rmu_co8465657.1_g000001 Rmu_sc0003910.1_g000012
rosa_roxburghii	Rroxscaffold_7G00191290
rosa_rugosa	Rorug06G0108400 Rorug06G0108500
rosa_samantha	Rh6AG219300 Rh6BG223200 Rh6CG225700 Rh6DG216000
rosa_wichuraiana	Rw6G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	4
AccB1I	GGYRCC	4 cut(s)	4, 35, 1482, 2219
AccB7I	CCANNNNNTGG	2 cut(s)	32, 290
AccBSI	CCGCTC	1 cut(s)	2684
AccII	CGCG	2 cut(s)	252, 1327
AciI	CCGC	7 cut(s)	252, 1325, 1932, 1935, 2144, 2523, 2684
AclWI	GGATC	5 cut(s)	275, 288, 1907, 2300, 2658
AcoI	YGGCCR	5 cut(s)	1162, 1348, 1647, 1794, 1894
AcuI	CTGAAG	3 cut(s)	1089, 1472, 1697
AcyI	GRCGYC	1 cut(s)	1483
AfaI	GTAC	8 cut(s)	6, 133, 364, 505, 1119, 1294, 2248, 2343
AfiI	CCNNNNNNNGG	7 cut(s)	32, 290, 529, 1232, 1768, 2025, 2096
AflIII	ACRYGT	1 cut(s)	777
AjnI	CCWGG	8 cut(s)	235, 358, 1012, 1225, 1557, 1915, 1926, 2377
AloI	GAACNNNNNNTCC	4 cut(s)	622, 654, 2091, 2123
Alw21I	GWGCWC	3 cut(s)	322, 1027, 2327
Alw26I	GTCTC	1 cut(s)	1760
Alw44I	GTGCAC	1 cut(s)	318
AlwI	GGATC	5 cut(s)	275, 288, 1907, 2300, 2658
AlwNI	CAGNNNCTG	3 cut(s)	976, 1922, 2653
Ama87I	CYCGRG	1 cut(s)	2619
AoxI	GGCC	9 cut(s)	223, 1064, 1162, 1348, 1647, 1794, 1894, 1929, 2374
ApaLI	GTGCAC	1 cut(s)	318
ArsI	GACNNNNNNTTYG	2 cut(s)	1804, 1836
Asp700I	GAANNNNTTC	1 cut(s)	2578
Asp718I	GGTACC	1 cut(s)	4
AspLEI	GCGC	3 cut(s)	942, 1485, 2152
AspS9I	GGNCC	4 cut(s)	223, 233, 1778, 2375
AsuC2I	CCSGG	2 cut(s)	222, 1264
AsuHPI	GGTGA	4 cut(s)	117, 2169, 2250, 2698
AsuII	TTCGAA	1 cut(s)	68
AvaI	CYCGRG	1 cut(s)	2619
AvaII	GGWCC	2 cut(s)	233, 1778
AxyI	CCTNAGG	2 cut(s)	1188, 1521
BaeGI	GKGCMC	2 cut(s)	40, 322
BalI	TGGCCA	4 cut(s)	1350, 1649, 1796, 1896
BamHI	GGATCC	1 cut(s)	280
BanI	GGYRCC	4 cut(s)	4, 35, 1482, 2219
BanII	GRGCYC	3 cut(s)	579, 2031, 2327
BbsI	GAAGAC	4 cut(s)	171, 783, 1077, 1703
Bbv12I	GWGCWC	3 cut(s)	322, 1027, 2327
BccI	CCATC	4 cut(s)	867, 1412, 2043, 2125
BceAI	ACGGC	3 cut(s)	2389, 2482, 2707
BcgI	CGANNNNNNTGC	2 cut(s)	2371, 2405
BciT130I	CCWGG	8 cut(s)	237, 360, 1014, 1227, 1559, 1917, 1928, 2379
BciVI	GTATCC	1 cut(s)	256
BclI	TGATCA	1 cut(s)	592
BcnI	CCSGG	2 cut(s)	222, 1264
BcoDI	GTCTC	1 cut(s)	1760
BfaI	CTAG	1 cut(s)	2133
BfmI	CTRYAG	1 cut(s)	1542
BfoI	RGCGCY	2 cut(s)	943, 1486
BfuI	GTATCC	1 cut(s)	256
BglII	AGATCT	2 cut(s)	986, 1447
BlpI	GCTNAGC	2 cut(s)	547, 1026
Bme18I	GGWCC	2 cut(s)	233, 1778
BmeT110I	CYCGRG	1 cut(s)	2619
BmgT120I	GGNCC	4 cut(s)	223, 233, 1778, 2375
BmrI	ACTGGG	3 cut(s)	34, 94, 940
BmsI	GCATC	7 cut(s)	350, 742, 835, 1586, 2003, 2618, 2644
BmuI	ACTGGG	3 cut(s)	34, 94, 940
BpiI	GAAGAC	4 cut(s)	171, 783, 1077, 1703
BpmI	CTGGAG	2 cut(s)	1111, 1428
Bpu10I	CCTNAGC	1 cut(s)	2485
Bpu1102I	GCTNAGC	2 cut(s)	547, 1026
Bpu14I	TTCGAA	1 cut(s)	68
BpuMI	CCSGG	2 cut(s)	222, 1264
BsaAI	YACGTR	1 cut(s)	131
BsaHI	GRCGYC	1 cut(s)	1483
BsaJI	CCNNGG	7 cut(s)	634, 1226, 1262, 1656, 1854, 2377, 2544
BsaXI	ACNNNNNCTCC	6 cut(s)	622, 652, 756, 786, 2503, 2533
Bsc4I	CCNNNNNNNGG	7 cut(s)	32, 290, 529, 1232, 1768, 2025, 2096
Bse21I	CCTNAGG	2 cut(s)	1188, 1521
Bse3DI	GCAATG	4 cut(s)	169, 307, 933, 2574
BseBI	CCWGG	8 cut(s)	237, 360, 1014, 1227, 1559, 1917, 1928, 2379
BseDI	CCNNGG	7 cut(s)	634, 1226, 1262, 1656, 1854, 2377, 2544
BseGI	GGATG	5 cut(s)	1198, 1423, 1580, 1994, 2117
BseLI	CCNNNNNNNGG	7 cut(s)	32, 290, 529, 1232, 1768, 2025, 2096
BseMI	GCAATG	4 cut(s)	169, 307, 933, 2574
BseMII	CTCAG	5 cut(s)	809, 1040, 1202, 1535, 2499
BseRI	GAGGAG	5 cut(s)	555, 691, 1316, 1871, 2021
BseSI	GKGCMC	2 cut(s)	40, 322
Bsh1236I	CGCG	2 cut(s)	252, 1327
Bsh1285I	CGRYCG	1 cut(s)	1248
BshFI	GGCC	9 cut(s)	225, 1066, 1164, 1350, 1649, 1796, 1896, 1931, 2376
BshNI	GGYRCC	4 cut(s)	4, 35, 1482, 2219
BsiEI	CGRYCG	1 cut(s)	1248
BsiHKAI	GWGCWC	3 cut(s)	322, 1027, 2327
BsiHKCI	CYCGRG	1 cut(s)	2619
BsiSI	CCGG	2 cut(s)	221, 1264
BslFI	GGGAC	2 cut(s)	1786, 2073
BslI	CCNNNNNNNGG	7 cut(s)	32, 290, 529, 1232, 1768, 2025, 2096
BsmAI	GTCTC	1 cut(s)	1760
BsmBI	CGTCTC	1 cut(s)	1760
BsmFI	GGGAC	2 cut(s)	1786, 2073
BsmI	GAATGC	1 cut(s)	805
BsnI	GGCC	9 cut(s)	225, 1066, 1164, 1350, 1649, 1796, 1896, 1931, 2376
BsoBI	CYCGRG	1 cut(s)	2619
Bsp119I	TTCGAA	1 cut(s)	68
Bsp1286I	GDGCHC	6 cut(s)	40, 322, 579, 1027, 2031, 2327
Bsp1407I	TGTACA	1 cut(s)	2341
Bsp143I	GATC	8 cut(s)	280, 592, 715, 986, 1447, 1912, 2305, 2650
Bsp1720I	GCTNAGC	2 cut(s)	547, 1026
Bsp19I	CCATGG	1 cut(s)	2544
BspACI	CCGC	7 cut(s)	252, 1325, 1932, 1935, 2144, 2523, 2684
BspANI	GGCC	9 cut(s)	225, 1066, 1164, 1350, 1649, 1796, 1896, 1931, 2376
BspCNI	CTCAG	5 cut(s)	808, 1039, 1201, 1534, 2498
BspFNI	CGCG	2 cut(s)	252, 1327
BspMAI	CTGCAG	1 cut(s)	1546
BspPI	GGATC	5 cut(s)	275, 288, 1907, 2300, 2658
BspQI	GCTCTTC	1 cut(s)	1485
BspT104I	TTCGAA	1 cut(s)	68
BspT107I	GGYRCC	4 cut(s)	4, 35, 1482, 2219
BsrBI	CCGCTC	1 cut(s)	2684
BsrDI	GCAATG	4 cut(s)	169, 307, 933, 2574
BsrGI	TGTACA	1 cut(s)	2341
BssECI	CCNNGG	7 cut(s)	634, 1226, 1262, 1656, 1854, 2377, 2544
BssMI	GATC	8 cut(s)	280, 592, 715, 986, 1447, 1912, 2305, 2650
BssNI	GRCGYC	1 cut(s)	1483
BssT1I	CCWWGG	3 cut(s)	634, 1656, 2544
Bst2UI	CCWGG	8 cut(s)	237, 360, 1014, 1227, 1559, 1917, 1928, 2379
Bst4CI	ACNGT	9 cut(s)	143, 417, 486, 503, 1205, 1249, 1644, 1838, 2087
Bst6I	CTCTTC	3 cut(s)	496, 1485, 1599
BstACI	GRCGYC	1 cut(s)	1483
BstAPI	GCANNNNNTGC	3 cut(s)	478, 616, 976
BstAUI	TGTACA	1 cut(s)	2341
BstBAI	YACGTR	1 cut(s)	131
BstBI	TTCGAA	1 cut(s)	68
BstC8I	GCNNGC	5 cut(s)	683, 1223, 2014, 2148, 2541
BstDEI	CTNAG	8 cut(s)	188, 547, 795, 1026, 1188, 1521, 2485, 2669
BstDSI	CCRYGG	1 cut(s)	2544
BstEII	GGTNACC	1 cut(s)	407
BstF5I	GGATG	5 cut(s)	1198, 1423, 1580, 1994, 2117
BstFNI	CGCG	2 cut(s)	252, 1327
BstH2I	RGCGCY	2 cut(s)	943, 1486
BstHHI	GCGC	3 cut(s)	942, 1485, 2152
BstKTI	GATC	8 cut(s)	283, 595, 718, 989, 1450, 1915, 2308, 2653
BstMAI	GTCTC	1 cut(s)	1760
BstMBI	GATC	8 cut(s)	280, 592, 715, 986, 1447, 1912, 2305, 2650
BstMCI	CGRYCG	1 cut(s)	1248
BstNI	CCWGG	8 cut(s)	237, 360, 1014, 1227, 1559, 1917, 1928, 2379
BstNSI	RCATGY	1 cut(s)	781
BstPI	GGTNACC	1 cut(s)	407
BstSFI	CTRYAG	1 cut(s)	1542
BstSLI	GKGCMC	2 cut(s)	40, 322
BstUI	CGCG	2 cut(s)	252, 1327
BstV2I	GAAGAC	4 cut(s)	171, 783, 1077, 1703
BstX2I	RGATCY	5 cut(s)	280, 986, 1447, 1912, 2650
BstXI	CCANNNNNNTGG	1 cut(s)	1657
BstYI	RGATCY	5 cut(s)	280, 986, 1447, 1912, 2650
Bsu36I	CCTNAGG	2 cut(s)	1188, 1521
BsuI	GTATCC	1 cut(s)	256
BsuRI	GGCC	9 cut(s)	225, 1066, 1164, 1350, 1649, 1796, 1896, 1931, 2376
BtgI	CCRYGG	1 cut(s)	2544
BtsCI	GGATG	5 cut(s)	1198, 1423, 1580, 1994, 2117
BtsIMutI	CAGTG	3 cut(s)	322, 648, 1201
Cac8I	GCNNGC	5 cut(s)	683, 1223, 2014, 2148, 2541
CaiI	CAGNNNCTG	3 cut(s)	976, 1922, 2653
CfoI	GCGC	3 cut(s)	942, 1485, 2152
Cfr13I	GGNCC	4 cut(s)	223, 233, 1778, 2375
Csp6I	GTAC	8 cut(s)	5, 132, 363, 504, 1118, 1293, 2247, 2342
CspCI	CAANNNNNGTGG	4 cut(s)	10, 45, 2696, 2731
CviQI	GTAC	8 cut(s)	5, 132, 363, 504, 1118, 1293, 2247, 2342
DdeI	CTNAG	8 cut(s)	188, 547, 795, 1026, 1188, 1521, 2485, 2669
DinI	GGCGCC	1 cut(s)	1484
DpnI	GATC	8 cut(s)	282, 594, 717, 988, 1449, 1914, 2307, 2652
DpnII	GATC	8 cut(s)	280, 592, 715, 986, 1447, 1912, 2305, 2650
DraI	TTTAAA	1 cut(s)	1273
EaeI	YGGCCR	5 cut(s)	1162, 1348, 1647, 1794, 1894
Eam1104I	CTCTTC	3 cut(s)	496, 1485, 1599
EarI	CTCTTC	3 cut(s)	496, 1485, 1599
EciI	GGCGGA	1 cut(s)	2538
Ecl136II	GAGCTC	1 cut(s)	2325
Eco130I	CCWWGG	3 cut(s)	634, 1656, 2544
Eco147I	AGGCCT	1 cut(s)	1066
Eco24I	GRGCYC	3 cut(s)	579, 2031, 2327
Eco32I	GATATC	1 cut(s)	1719
Eco47I	GGWCC	2 cut(s)	233, 1778
Eco53kI	GAGCTC	1 cut(s)	2325
Eco57I	CTGAAG	3 cut(s)	1089, 1472, 1697
Eco81I	CCTNAGG	2 cut(s)	1188, 1521
Eco88I	CYCGRG	1 cut(s)	2619
Eco91I	GGTNACC	1 cut(s)	407
EcoICRI	GAGCTC	1 cut(s)	2325
EcoO65I	GGTNACC	1 cut(s)	407
EcoRI	GAATTC	4 cut(s)	70, 1900, 2041, 2050
EcoRII	CCWGG	8 cut(s)	235, 358, 1012, 1225, 1557, 1915, 1926, 2377
EcoRV	GATATC	1 cut(s)	1719
EcoT14I	CCWWGG	3 cut(s)	634, 1656, 2544
EcoT22I	ATGCAT	3 cut(s)	828, 1579, 2637
EcoT38I	GRGCYC	3 cut(s)	579, 2031, 2327
EgeI	GGCGCC	1 cut(s)	1484
EheI	GGCGCC	1 cut(s)	1484
ErhI	CCWWGG	3 cut(s)	634, 1656, 2544
Esp3I	CGTCTC	1 cut(s)	1760
FalI	AAGNNNNNCTT	4 cut(s)	775, 807, 1279, 1311
FaqI	GGGAC	2 cut(s)	1786, 2073
FauI	CCCGC	1 cut(s)	2151
FauNDI	CATATG	2 cut(s)	199, 334
FbaI	TGATCA	1 cut(s)	592
FokI	GGATG	5 cut(s)	1205, 1430, 1567, 1981, 2104
FriOI	GRGCYC	3 cut(s)	579, 2031, 2327
FspBI	CTAG	1 cut(s)	2133
GlaI	GCGC	3 cut(s)	941, 1484, 2151
GsuI	CTGGAG	2 cut(s)	1111, 1428
HaeII	RGCGCY	2 cut(s)	943, 1486
HaeIII	GGCC	9 cut(s)	225, 1066, 1164, 1350, 1649, 1796, 1896, 1931, 2376
HapII	CCGG	2 cut(s)	221, 1264
HhaI	GCGC	3 cut(s)	942, 1485, 2152
Hin1I	GRCGYC	1 cut(s)	1483
Hin6I	GCGC	3 cut(s)	940, 1483, 2150
HinP1I	GCGC	3 cut(s)	940, 1483, 2150
HincII	GTYRAC	3 cut(s)	420, 1424, 2442
HindII	GTYRAC	3 cut(s)	420, 1424, 2442
HinfI	GANTC	4 cut(s)	275, 973, 2113, 2315
HpaII	CCGG	2 cut(s)	221, 1264
HphI	GGTGA	4 cut(s)	117, 2169, 2250, 2698
Hpy166II	GTNNAC	8 cut(s)	21, 320, 420, 1424, 2332, 2344, 2442, 2689
Hpy188III	TCNNGA	8 cut(s)	75, 1090, 1190, 1415, 1445, 1598, 2055, 2621
Hpy8I	GTNNAC	8 cut(s)	21, 320, 420, 1424, 2332, 2344, 2442, 2689
HpyAV	CCTTC	7 cut(s)	18, 63, 333, 1803, 2172, 2211, 2589
HpyCH4III	ACNGT	9 cut(s)	143, 417, 486, 503, 1205, 1249, 1644, 1838, 2087
HpyCH4IV	ACGT	2 cut(s)	130, 365
HpyF3I	CTNAG	8 cut(s)	188, 547, 795, 1026, 1188, 1521, 2485, 2669
HpySE526I	ACGT	2 cut(s)	130, 365
Hsp92I	GRCGYC	1 cut(s)	1483
HspAI	GCGC	3 cut(s)	940, 1483, 2150
KasI	GGCGCC	1 cut(s)	1482
KpnI	GGTACC	1 cut(s)	8
Ksp22I	TGATCA	1 cut(s)	592
Kzo9I	GATC	8 cut(s)	280, 592, 715, 986, 1447, 1912, 2305, 2650
LguI	GCTCTTC	1 cut(s)	1485
LmnI	GCTCC	7 cut(s)	630, 678, 1303, 1858, 1987, 2034, 2681
LweI	GCATC	7 cut(s)	350, 742, 835, 1586, 2003, 2618, 2644
MaeI	CTAG	1 cut(s)	2133
MaeII	ACGT	2 cut(s)	130, 365
MaeIII	GTNAC	5 cut(s)	407, 846, 948, 2175, 2664
MalI	GATC	8 cut(s)	282, 594, 717, 988, 1449, 1914, 2307, 2652
MbiI	CCGCTC	1 cut(s)	2684
MboI	GATC	8 cut(s)	280, 592, 715, 986, 1447, 1912, 2305, 2650
MfeI	CAATTG	2 cut(s)	27, 581
MflI	RGATCY	5 cut(s)	280, 986, 1447, 1912, 2650
MhlI	GDGCHC	6 cut(s)	40, 322, 579, 1027, 2031, 2327
MlsI	TGGCCA	4 cut(s)	1350, 1649, 1796, 1896
MluNI	TGGCCA	4 cut(s)	1350, 1649, 1796, 1896
Mly113I	GGCGCC	1 cut(s)	1483
MmeI	TCCRAC	4 cut(s)	1341, 1608, 2385, 2581
Mox20I	TGGCCA	4 cut(s)	1350, 1649, 1796, 1896
Mph1103I	ATGCAT	3 cut(s)	828, 1579, 2637
MroXI	GAANNNNTTC	1 cut(s)	2578
MscI	TGGCCA	4 cut(s)	1350, 1649, 1796, 1896
MseI	TTAA	5 cut(s)	626, 1272, 1731, 2370, 2697
Msp20I	TGGCCA	4 cut(s)	1350, 1649, 1796, 1896
MspA1I	CMGCKG	1 cut(s)	2231
MspI	CCGG	2 cut(s)	221, 1264
MunI	CAATTG	2 cut(s)	27, 581
Mva1269I	GAATGC	1 cut(s)	805
MvaI	CCWGG	8 cut(s)	237, 360, 1014, 1227, 1559, 1917, 1928, 2379
MvnI	CGCG	2 cut(s)	252, 1327
NarI	GGCGCC	1 cut(s)	1483
NciI	CCSGG	2 cut(s)	222, 1264
NcoI	CCATGG	1 cut(s)	2544
NdeI	CATATG	2 cut(s)	199, 334
NdeII	GATC	8 cut(s)	280, 592, 715, 986, 1447, 1912, 2305, 2650
NmeAIII	GCCGAG	1 cut(s)	1787
NmuCI	GTSAC	1 cut(s)	2175
NsiI	ATGCAT	3 cut(s)	828, 1579, 2637
NspI	RCATGY	1 cut(s)	781
NspV	TTCGAA	1 cut(s)	68
PaeR7I	CTCGAG	1 cut(s)	2619
PceI	AGGCCT	1 cut(s)	1066
PciI	ACATGT	1 cut(s)	777
PciSI	GCTCTTC	1 cut(s)	1485
PcsI	WCGNNNNNNNCGW	1 cut(s)	1820
PctI	GAATGC	1 cut(s)	805
PdmI	GAANNNNTTC	1 cut(s)	2578
PfeI	GAWTC	4 cut(s)	275, 973, 2113, 2315
PflFI	GACNNNGTC	1 cut(s)	2529
PflMI	CCANNNNNTGG	2 cut(s)	32, 290
PluTI	GGCGCC	1 cut(s)	1486
Ppu21I	YACGTR	1 cut(s)	131
PscI	ACATGT	1 cut(s)	777
Psp124BI	GAGCTC	1 cut(s)	2327
Psp6I	CCWGG	8 cut(s)	235, 358, 1012, 1225, 1557, 1915, 1926, 2377
PspEI	GGTNACC	1 cut(s)	407
PspGI	CCWGG	8 cut(s)	235, 358, 1012, 1225, 1557, 1915, 1926, 2377
PspPI	GGNCC	4 cut(s)	223, 233, 1778, 2375
PstI	CTGCAG	1 cut(s)	1546
PstNI	CAGNNNCTG	3 cut(s)	976, 1922, 2653
PsuI	RGATCY	5 cut(s)	280, 986, 1447, 1912, 2650
PsyI	GACNNNGTC	1 cut(s)	2529
PvuII	CAGCTG	1 cut(s)	2231
RsaI	GTAC	8 cut(s)	6, 133, 364, 505, 1119, 1294, 2248, 2343
RsaNI	GTAC	8 cut(s)	5, 132, 363, 504, 1118, 1293, 2247, 2342
SacI	GAGCTC	1 cut(s)	2327
SapI	GCTCTTC	1 cut(s)	1485
SaqAI	TTAA	5 cut(s)	626, 1272, 1731, 2370, 2697
Sau3AI	GATC	8 cut(s)	280, 592, 715, 986, 1447, 1912, 2305, 2650
Sau96I	GGNCC	4 cut(s)	223, 233, 1778, 2375
SduI	GDGCHC	6 cut(s)	40, 322, 579, 1027, 2031, 2327
SfaNI	GCATC	7 cut(s)	350, 742, 835, 1586, 2003, 2618, 2644
SfcI	CTRYAG	1 cut(s)	1542
SfoI	GGCGCC	1 cut(s)	1484
Sfr274I	CTCGAG	1 cut(s)	2619
SfuI	TTCGAA	1 cut(s)	68
SinI	GGWCC	2 cut(s)	233, 1778
SlaI	CTCGAG	1 cut(s)	2619
SmlI	CTYRAG	1 cut(s)	2619
SmoI	CTYRAG	1 cut(s)	2619
SseBI	AGGCCT	1 cut(s)	1066
SsiI	CCGC	7 cut(s)	252, 1325, 1932, 1935, 2144, 2523, 2684
SspDI	GGCGCC	1 cut(s)	1482
SspI	AATATT	1 cut(s)	1112
SspMI	CTAG	1 cut(s)	2133
SstI	GAGCTC	1 cut(s)	2327
StuI	AGGCCT	1 cut(s)	1066
StyI	CCWWGG	3 cut(s)	634, 1656, 2544
TaaI	ACNGT	9 cut(s)	143, 417, 486, 503, 1205, 1249, 1644, 1838, 2087
TaiI	ACGT	2 cut(s)	133, 368
TaqI	TCGA	6 cut(s)	68, 538, 1504, 1639, 1807, 2620
TatI	WGTACW	2 cut(s)	2246, 2341
TauI	GCSGC	3 cut(s)	1327, 1934, 1937
TfiI	GAWTC	4 cut(s)	275, 973, 2113, 2315
Tru1I	TTAA	5 cut(s)	626, 1272, 1731, 2370, 2697
Tru9I	TTAA	5 cut(s)	626, 1272, 1731, 2370, 2697
TscAI	CASTG	3 cut(s)	322, 648, 1208
TseFI	GTSAC	1 cut(s)	2175
Tsp45I	GTSAC	1 cut(s)	2175
TspGWI	ACGGA	2 cut(s)	1923, 2263
TspRI	CASTG	3 cut(s)	322, 648, 1208
Tth111I	GACNNNGTC	1 cut(s)	2529
Van91I	CCANNNNNTGG	2 cut(s)	32, 290
VneI	GTGCAC	1 cut(s)	318
VpaK11BI	GGWCC	2 cut(s)	233, 1778
XceI	RCATGY	1 cut(s)	781
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2669
XhoI	CTCGAG	1 cut(s)	2619
XmnI	GAANNNNTTC	1 cut(s)	2578
XspI	CTAG	1 cut(s)	2133
Zsp2I	ATGCAT	3 cut(s)	828, 1579, 2637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.