Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009217

Physical Location & Seq

Genomic Coordinates Forward (+)

40028153 .. 40036141

Gene Structure 7989 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24890

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2733 bp

ATGGTACCTTCGGGGCCGCCCAATCCGATTGGTGGTGCCCAGTCTGTTTCACCTTCACTCTTGCGTTCAAATTCTGGAATGCTTGGAGGTCAAAATGGTCCACTACCTTCTCAGTCAGCTTTTCCGTCGCTTGTCTCACCACGTACTCAATTCGGTAACATGAACATGCTTGGAAATGTAGCCAATGTGTCTTCTCTCCTTAATCAGTCTTTTGGAAATGGGATTCCAAATTCAGGGCTTTCTGGTCCTGGTAGCAGCCATCGTGGAGGTATTGATACTGGGGCTGAGTCCGATCCACTCTCTAGTGTTGGCAATGGAATGGGTTTCAATGCTCCTTCATCTTATAATGCATCAAACCTGGCTAATCCTGGTACATCTGGTCAAGGTCAGGGTCAGGGTCAGGTTCAACAATTTTCAAACCCTTCTGGTAATCAACTGTTGGCAGATCAACAACAGCAACAACTTGAGAATCAGAATTTTCAGCATAGTCAGCAGCAAATGCAACAGTTCTCTGCCCCTCACAACACACAGCAGCAGCAGCAGCAATTTCAGGCAAATCGAGGGAGCTTAGCTGGTGTTGGACAAGTCAAGTTGGAGCCCCAGTTGACCAATGATCAACATGGTCAGCAGCAGCAGCAGTTGCAGTCTTTGAGAGTTCTTGGTCAGGTGAAAATGGAACCTCAACAACTTCAGAACATGAGAAACTTGCCGCCTGTAAAAGTGGAACCCCAGCATAATGATCAGTCATTGTATTTGCATCAACAACAGCAACAGCAACAGCAACAGCAACAACAGCAGTTACTCAACATGTCAAGGCACCCTTCTCAAGCTACTGCTGCCCATATAAACCTTCTGCATCAGCAGAGATTCTTGCAGCTAACACAACAACACCAGCAACAGCAACTCTTAAAAGCAATGCCTCAGCCACGGCCCCAAGTACAGCAGCAATTTCCGCAACAGAATCTCCCTATGAGATCTCCTGCAAAACCAGTGTATGAACCTGGAATGTGTGCACGGCGCTTGACGCATTATATGTATCAGCAACAACATAGGCCTGAAGACAATAATATTGAATTCTGGAGAAAATTTGTTGCCGAGTATTTTGTACCTCATGCCAAGAAGAAATGGTGTGTTTCTATGTATGGAAGTGGCCGGCAGACAACTGGTGTTTTCCCTCAGGATGTATGGCATTGTGAGATATGCAATCGCAAGCCTGGGCGGGGCTTTGAAGCAACTGTTGAGGTTCTTCCCCGGCTATTTAAAATCAAGTATGAAAGTGGTACCTTGGAGGAACTTCTGTATGTTGATATGCCTCGTGAGTATCATAATTCATCTGGTCAGATTGTGCTGGACTATGCCAAAGCAATACAAGAAAGTGTTTTTGAGCAGCTTCGTGTTGTTCGGGATGGTCAACTTCGAATCGTGTTCTCTCCAGACTTGAAGATATGCTCTTGGGAGTTTTGTGCAAGGCGCCATGAAGAGCTTATCCCTCGAAGATTACTGATACCTCAGGTTAGTCAACTTGGGGCTGCAGCTCAAAAATACCAGGCTGCTACTCAAAATGCATCATCTAATTTATCTATTCCAGACATACAAAGTAATTGTAATATGTTTGTATCGTCAGCTCGGCAGTTGGCAAAAACCCTGGAAGTGCCATTAGTAAATGATTTAGGCTATACAAAGAGATACGTAAGGTGTCTACAGATATCAGAAGTGGTTAATAGTATGAAGGACTTGATTGATTACAGCCGAGAGACAGGGACTGGACCTATGGAGAGCTTAGCCAAGTTTCCTCGAAGGACGAGTACTTCTGGGTTTCACAATCAAGCACAGCAGTCTGATGAACAAATGCAGCAGCAACAGCAACAGCAAACGGTGGGCCAGAATTCAAATGACGCAAGCTCTGTGCAGGCCAATATGCAACTTGCTGTTAGTAATGGACCTAGTGGTATGGCTAGTGTAAATAACGTGAACACAGCATCCACATCTACCTCTGCAAGCACCATTGTGGGTCTCCTCCATCAAAATTCCATGAATTCCAGGCAACAGAGTTCGATGAATAATGCAAACAGTCCCTATGGAGGAAGTTCTGTTCAGATTCCATCCCCTGGTTCTTCTAGTACAATCCCTCAGACTCAAGCAAACCCTTCTCCATTCCAGTCACCAACACCCTCATCGAACAATCCATCCCAAACATCTCATGGTGCCTTGACAGCTACCAATCACATGAGTGCAGCAAATTCACCAGCAAATGTATCCATGCAACAGCCAGCCCTTTCTGGTGAGGCTGATCCAAGTGATTCCCAGAGCTCTGTCCACAAAATTATACACGACATCATGATGTCCAACCAGCTTAATGGCTCAGGTAGTATGGTTGGTGTGGGTTCTCTGGGAAACGATGTGAAAAACATGAATGGGATTTTGTCTAGTAGCAACAACACAGGCATGAACGGTGGCAACTGTCTGTCGGGGAATGTCATGGGCAACAGTAACTCAGGTATGGGGGGTGGTGGATTTGGGAGTATGGGTGGACTTGGTCAGCCTGCCATGGTTAATGGAATGAGAGCTGCAATAGGAAATAATTCTGTTATGAATGGAAGGGTTGGAATGACATCAATGGCTCGAGAACAAAGTATGCATCATCAACAGGATATAGGGAGCCAGCTACTTAGTGGGCTTGGAGCGGTTAATGGGTTTAATAATCTTCAATTTGATTGGAAACATTCTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0010243 GO:0010272 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0035670 GO:0036293 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0046898 GO:0046982 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060090 GO:0060992 GO:0061458 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901363 GO:1901654 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM_bind

Protein Analysis

910

Amino Acids

98.87

Weight (kDa)

8.83

Isoelectric Point (pI)

57.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM_bind	PF01803	340 - 594	1.4e-67	LIM-domain binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43850 AT1G43850
fragaria_vesca	FvH4_2g14890
malus_domestica	MD05G1012000.v1.1 MD10G1012000.v1.1
prunus_persica	Prupe.8G017000_v2.0.a1 Prupe.8G017000_v2.0.a1 Prupe.8G017000_v2.0.a1
pyrus_communis	pycom05g00700 pycom10g00760
rosa_chinensis	RchiOBHm_Chr6g0277461
rosa_laevigata	RLG00000013299
rosa_multiflora	Rmu_co8465657.1_g000001 Rmu_sc0003910.1_g000012
rosa_roxburghii	Rroxscaffold_7G00191290
rosa_rugosa	Rorug06G0108400 Rorug06G0108500
rosa_samantha	Rh6AG219300 Rh6BG223200 Rh6CG225700 Rh6DG216000
rosa_wichuraiana	Rw6G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	345
Acc65I	GGTACC	2 cut(s)	4, 1280
AccB1I	GGYRCC	6 cut(s)	4, 35, 816, 1280, 1470, 2204
AccB7I	CCANNNNNTGG	1 cut(s)	2108
AccBSI	CCGCTC	1 cut(s)	2684
AccI	GTMKAC	1 cut(s)	1699
AciI	CCGC	5 cut(s)	17, 710, 953, 1219, 2684
AclWI	GGATC	2 cut(s)	287, 2285
AcoI	YGGCCR	1 cut(s)	1150
AcsI	RAATTY	9 cut(s)	70, 229, 475, 1073, 1085, 1885, 2026, 2035, 2239
AcuI	CTGAAG	2 cut(s)	674, 1077
AcyI	GRCGYC	1 cut(s)	1471
AfaI	GTAC	8 cut(s)	6, 145, 373, 939, 1107, 1282, 1807, 2122
AfiI	CCNNNNNNNGG	5 cut(s)	32, 233, 1220, 2081, 2108
AflIII	ACRYGT	1 cut(s)	807
AgsI	TTSAA	9 cut(s)	69, 328, 407, 417, 1073, 1229, 1441, 1890, 2708
AjnI	CCWGG	9 cut(s)	247, 357, 367, 1000, 1213, 1545, 1644, 2039, 2107
AleI	CACNNNNGTG	2 cut(s)	2006, 2229
AloI	GAACNNNNNNTCC	6 cut(s)	1964, 1996, 2076, 2108, 2171, 2203
Alw21I	GWGCWC	2 cut(s)	1015, 2312
Alw26I	GTCTC	3 cut(s)	139, 1748, 2018
Alw44I	GTGCAC	1 cut(s)	1011
AlwI	GGATC	2 cut(s)	287, 2285
AlwNI	CAGNNNCTG	1 cut(s)	1763
Ama87I	CYCGRG	1 cut(s)	2622
AoxI	GGCC	6 cut(s)	14, 929, 1052, 1150, 1879, 1911
ApaLI	GTGCAC	1 cut(s)	1011
ApoI	RAATTY	9 cut(s)	70, 229, 475, 1073, 1085, 1885, 2026, 2035, 2239
Asp700I	GAANNNNTTC	1 cut(s)	2581
Asp718I	GGTACC	2 cut(s)	4, 1280
AspLEI	GCGC	2 cut(s)	1020, 1473
AspS9I	GGNCC	7 cut(s)	14, 98, 245, 930, 1766, 1879, 1940
AsuC2I	CCSGG	1 cut(s)	1252
AsuHPI	GGTGA	6 cut(s)	42, 129, 679, 2154, 2235, 2294
AsuII	TTCGAA	1 cut(s)	1417
AvaI	CYCGRG	1 cut(s)	2622
AvaII	GGWCC	4 cut(s)	98, 245, 1766, 1940
AxyI	CCTNAGG	2 cut(s)	1176, 1509
BaeGI	GKGCMC	2 cut(s)	40, 1015
BanI	GGYRCC	6 cut(s)	4, 35, 816, 1280, 1470, 2204
BanII	GRGCYC	2 cut(s)	600, 2312
BarI	GAAGNNNNNNTAC	2 cut(s)	1789, 1821
BauI	CACGAG	1 cut(s)	1314
BbsI	GAAGAC	2 cut(s)	183, 1065
Bbv12I	GWGCWC	2 cut(s)	1015, 2312
BbvCI	CCTCAGC	1 cut(s)	921
BccI	CCATC	5 cut(s)	267, 1400, 2028, 2110, 2194
BceAI	ACGGC	2 cut(s)	944, 1031
BciT130I	CCWGG	9 cut(s)	249, 359, 369, 1002, 1215, 1547, 1646, 2041, 2109
BciVI	GTATCC	1 cut(s)	2266
BclI	TGATCA	2 cut(s)	613, 739
BcnI	CCSGG	1 cut(s)	1252
BcoDI	GTCTC	3 cut(s)	139, 1748, 2018
BfaI	CTAG	5 cut(s)	303, 1944, 1956, 2118, 2427
BfmI	CTRYAG	2 cut(s)	1530, 1700
BfoI	RGCGCY	2 cut(s)	1021, 1474
BfuI	GTATCC	1 cut(s)	2266
BglII	AGATCT	1 cut(s)	974
BlpI	GCTNAGC	2 cut(s)	568, 1780
BmcAI	AGTACT	1 cut(s)	1807
Bme18I	GGWCC	4 cut(s)	98, 245, 1766, 1940
BmeT110I	CYCGRG	1 cut(s)	2622
BmgT120I	GGNCC	7 cut(s)	14, 98, 245, 930, 1766, 1879, 1940
BmrI	ACTGGG	3 cut(s)	34, 288, 595
BmsI	GCATC	6 cut(s)	359, 766, 865, 1574, 1988, 2647
BmuI	ACTGGG	3 cut(s)	34, 288, 595
BpiI	GAAGAC	2 cut(s)	183, 1065
BpmI	CTGGAG	2 cut(s)	1099, 1416
Bpu10I	CCTNAGC	2 cut(s)	921, 2362
Bpu1102I	GCTNAGC	2 cut(s)	568, 1780
Bpu14I	TTCGAA	1 cut(s)	1417
BpuEI	CTTGAG	3 cut(s)	485, 810, 2121
BpuMI	CCSGG	1 cut(s)	1252
BsaAI	YACGTR	2 cut(s)	143, 1690
BsaHI	GRCGYC	1 cut(s)	1471
BsaI	GGTCTC	1 cut(s)	2018
BsaJI	CCNNGG	7 cut(s)	926, 1214, 1250, 1284, 1644, 2107, 2547
BsaXI	ACNNNNNCTCC	6 cut(s)	587, 617, 948, 978, 2512, 2542
Bsc4I	CCNNNNNNNGG	5 cut(s)	32, 233, 1220, 2081, 2108
Bse118I	RCCGGY	1 cut(s)	1152
Bse1I	ACTGG	7 cut(s)	40, 283, 601, 989, 1168, 1768, 2158
Bse21I	CCTNAGG	2 cut(s)	1176, 1509
Bse3DI	GCAATG	2 cut(s)	319, 921
BseBI	CCWGG	9 cut(s)	249, 359, 369, 1002, 1215, 1547, 1646, 2041, 2109
BseDI	CCNNGG	7 cut(s)	926, 1214, 1250, 1284, 1644, 2107, 2547
BseGI	GGATG	5 cut(s)	1186, 1411, 1979, 2102, 2186
BseLI	CCNNNNNNNGG	5 cut(s)	32, 233, 1220, 2081, 2108
BseMI	GCAATG	2 cut(s)	319, 921
BseMII	CTCAG	8 cut(s)	125, 276, 935, 1190, 1523, 2144, 2376, 2508
BseNI	ACTGG	7 cut(s)	40, 283, 601, 989, 1168, 1768, 2158
BseRI	GAGGAG	1 cut(s)	2006
BseSI	GKGCMC	2 cut(s)	40, 1015
BseYI	CCCAGC	1 cut(s)	729
BsgI	GTGCAG	2 cut(s)	1928, 2253
BshFI	GGCC	6 cut(s)	16, 931, 1054, 1152, 1881, 1913
BshNI	GGYRCC	6 cut(s)	4, 35, 816, 1280, 1470, 2204
BsiHKAI	GWGCWC	2 cut(s)	1015, 2312
BsiHKCI	CYCGRG	1 cut(s)	2622
BsiSI	CCGG	2 cut(s)	1153, 1252
BslFI	GGGAC	2 cut(s)	1774, 2058
BslI	CCNNNNNNNGG	5 cut(s)	32, 233, 1220, 2081, 2108
BsmAI	GTCTC	3 cut(s)	139, 1748, 2018
BsmFI	GGGAC	2 cut(s)	1774, 2058
BsmI	GAATGC	1 cut(s)	84
BsnI	GGCC	6 cut(s)	16, 931, 1054, 1152, 1881, 1913
Bso31I	GGTCTC	1 cut(s)	2018
BsoBI	CYCGRG	1 cut(s)	2622
Bsp119I	TTCGAA	1 cut(s)	1417
Bsp1286I	GDGCHC	4 cut(s)	40, 600, 1015, 2312
Bsp143I	GATC	6 cut(s)	292, 445, 613, 739, 974, 2290
Bsp1720I	GCTNAGC	2 cut(s)	568, 1780
Bsp19I	CCATGG	1 cut(s)	2547
BspACI	CCGC	5 cut(s)	17, 710, 953, 1219, 2684
BspANI	GGCC	6 cut(s)	16, 931, 1054, 1152, 1881, 1913
BspCNI	CTCAG	8 cut(s)	124, 277, 934, 1189, 1522, 2143, 2375, 2507
BspHI	TCATGA	1 cut(s)	2337
BspMAI	CTGCAG	1 cut(s)	1534
BspPI	GGATC	2 cut(s)	287, 2285
BspQI	GCTCTTC	1 cut(s)	1473
BspT104I	TTCGAA	1 cut(s)	1417
BspT107I	GGYRCC	6 cut(s)	4, 35, 816, 1280, 1470, 2204
BspTNI	GGTCTC	1 cut(s)	2018
BsrBI	CCGCTC	1 cut(s)	2684
BsrDI	GCAATG	2 cut(s)	319, 921
BsrFI	RCCGGY	1 cut(s)	1152
BsrI	ACTGG	7 cut(s)	40, 283, 601, 989, 1168, 1768, 2158
BssAI	RCCGGY	1 cut(s)	1152
BssECI	CCNNGG	7 cut(s)	926, 1214, 1250, 1284, 1644, 2107, 2547
BssMI	GATC	6 cut(s)	292, 445, 613, 739, 974, 2290
BssNI	GRCGYC	1 cut(s)	1471
BssSI	CACGAG	1 cut(s)	1314
BssT1I	CCWWGG	2 cut(s)	1284, 2547
Bst2BI	CACGAG	1 cut(s)	1314
Bst2UI	CCWGG	9 cut(s)	249, 359, 369, 1002, 1215, 1547, 1646, 2041, 2109
Bst4CI	ACNGT	8 cut(s)	438, 507, 1237, 1876, 2072, 2453, 2462, 2489
Bst6I	CTCTTC	1 cut(s)	1473
BstACI	GRCGYC	1 cut(s)	1471
BstAPI	GCANNNNNTGC	2 cut(s)	499, 640
BstBAI	YACGTR	2 cut(s)	143, 1690
BstBI	TTCGAA	1 cut(s)	1417
BstC8I	GCNNGC	8 cut(s)	1154, 1211, 1900, 1911, 1999, 2271, 2544, 2663
BstDSI	CCRYGG	2 cut(s)	926, 2547
BstF5I	GGATG	5 cut(s)	1186, 1411, 1979, 2102, 2186
BstH2I	RGCGCY	2 cut(s)	1021, 1474
BstHHI	GCGC	2 cut(s)	1020, 1473
BstKTI	GATC	6 cut(s)	295, 448, 616, 742, 977, 2293
BstMAI	GTCTC	3 cut(s)	139, 1748, 2018
BstMBI	GATC	6 cut(s)	292, 445, 613, 739, 974, 2290
BstNI	CCWGG	9 cut(s)	249, 359, 369, 1002, 1215, 1547, 1646, 2041, 2109
BstNSI	RCATGY	2 cut(s)	169, 811
BstSFI	CTRYAG	2 cut(s)	1530, 1700
BstSLI	GKGCMC	2 cut(s)	40, 1015
BstSNI	TACGTA	1 cut(s)	1690
BstV2I	GAAGAC	2 cut(s)	183, 1065
BstX2I	RGATCY	1 cut(s)	974
BstXI	CCANNNNNNTGG	1 cut(s)	2357
BstYI	RGATCY	1 cut(s)	974
Bsu36I	CCTNAGG	2 cut(s)	1176, 1509
BsuI	GTATCC	1 cut(s)	2266
BsuRI	GGCC	6 cut(s)	16, 931, 1054, 1152, 1881, 1913
BtgI	CCRYGG	2 cut(s)	926, 2547
BtsCI	GGATG	5 cut(s)	1186, 1411, 1979, 2102, 2186
BtsIMutI	CAGTG	1 cut(s)	996
Cac8I	GCNNGC	8 cut(s)	1154, 1211, 1900, 1911, 1999, 2271, 2544, 2663
CaiI	CAGNNNCTG	1 cut(s)	1763
CciI	TCATGA	1 cut(s)	2337
CfoI	GCGC	2 cut(s)	1020, 1473
Cfr10I	RCCGGY	1 cut(s)	1152
Cfr13I	GGNCC	7 cut(s)	14, 98, 245, 930, 1766, 1879, 1940
CseI	GACGC	2 cut(s)	1033, 1904
Csp6I	GTAC	8 cut(s)	5, 144, 372, 938, 1106, 1281, 1806, 2121
CviQI	GTAC	8 cut(s)	5, 144, 372, 938, 1106, 1281, 1806, 2121
DinI	GGCGCC	1 cut(s)	1472
DpnI	GATC	6 cut(s)	294, 447, 615, 741, 976, 2292
DpnII	GATC	6 cut(s)	292, 445, 613, 739, 974, 2290
DraI	TTTAAA	1 cut(s)	1261
EaeI	YGGCCR	1 cut(s)	1150
Eam1104I	CTCTTC	1 cut(s)	1473
EarI	CTCTTC	1 cut(s)	1473
Ecl136II	GAGCTC	1 cut(s)	2310
Eco105I	TACGTA	1 cut(s)	1690
Eco130I	CCWWGG	2 cut(s)	1284, 2547
Eco147I	AGGCCT	1 cut(s)	1054
Eco24I	GRGCYC	2 cut(s)	600, 2312
Eco31I	GGTCTC	1 cut(s)	2018
Eco32I	GATATC	1 cut(s)	1707
Eco47I	GGWCC	4 cut(s)	98, 245, 1766, 1940
Eco53kI	GAGCTC	1 cut(s)	2310
Eco57I	CTGAAG	2 cut(s)	674, 1077
Eco81I	CCTNAGG	2 cut(s)	1176, 1509
Eco88I	CYCGRG	1 cut(s)	2622
EcoICRI	GAGCTC	1 cut(s)	2310
EcoRI	GAATTC	3 cut(s)	1073, 1885, 2035
EcoRII	CCWGG	9 cut(s)	247, 357, 367, 1000, 1213, 1545, 1644, 2039, 2107
EcoRV	GATATC	1 cut(s)	1707
EcoT14I	CCWWGG	2 cut(s)	1284, 2547
EcoT22I	ATGCAT	3 cut(s)	352, 1567, 2640
EcoT38I	GRGCYC	2 cut(s)	600, 2312
EgeI	GGCGCC	1 cut(s)	1472
EheI	GGCGCC	1 cut(s)	1472
ErhI	CCWWGG	2 cut(s)	1284, 2547
FalI	AAGNNNNNCTT	2 cut(s)	805, 837
FaqI	GGGAC	2 cut(s)	1774, 2058
FauI	CCCGC	1 cut(s)	1212
FbaI	TGATCA	2 cut(s)	613, 739
FblI	GTMKAC	1 cut(s)	1699
FokI	GGATG	5 cut(s)	1193, 1418, 1966, 2089, 2173
FriOI	GRGCYC	2 cut(s)	600, 2312
FspBI	CTAG	5 cut(s)	303, 1944, 1956, 2118, 2427
GlaI	GCGC	2 cut(s)	1019, 1472
GsaI	CCCAGC	1 cut(s)	733
GsuI	CTGGAG	2 cut(s)	1099, 1416
HaeII	RGCGCY	2 cut(s)	1021, 1474
HaeIII	GGCC	6 cut(s)	16, 931, 1054, 1152, 1881, 1913
HapII	CCGG	2 cut(s)	1153, 1252
HgaI	GACGC	2 cut(s)	1033, 1904
HhaI	GCGC	2 cut(s)	1020, 1473
Hin1I	GRCGYC	1 cut(s)	1471
Hin6I	GCGC	2 cut(s)	1018, 1471
HinP1I	GCGC	2 cut(s)	1018, 1471
HincII	GTYRAC	3 cut(s)	606, 1412, 1520
HindII	GTYRAC	3 cut(s)	606, 1412, 1520
HinfI	GANTC	9 cut(s)	223, 287, 469, 867, 961, 1419, 2098, 2134, 2300
HpaII	CCGG	2 cut(s)	1153, 1252
HphI	GGTGA	6 cut(s)	42, 129, 679, 2154, 2235, 2294
Hpy166II	GTNNAC	9 cut(s)	101, 606, 1013, 1412, 1520, 1700, 1972, 2317, 2531
Hpy188I	TCNGA	9 cut(s)	27, 292, 474, 693, 1341, 1711, 1840, 2097, 2133
Hpy188III	TCNNGA	9 cut(s)	75, 1078, 1178, 1316, 1403, 1433, 1586, 2338, 2624
Hpy8I	GTNNAC	9 cut(s)	101, 606, 1013, 1412, 1520, 1700, 1972, 2317, 2531
Hpy99I	CGWCG	1 cut(s)	130
HpyCH4III	ACNGT	8 cut(s)	438, 507, 1237, 1876, 2072, 2453, 2462, 2489
HpyCH4IV	ACGT	3 cut(s)	142, 1689, 1968
HpySE526I	ACGT	3 cut(s)	142, 1689, 1968
Hsp92I	GRCGYC	1 cut(s)	1471
HspAI	GCGC	2 cut(s)	1018, 1471
KasI	GGCGCC	1 cut(s)	1470
KpnI	GGTACC	2 cut(s)	8, 1284
KroI	GCCGGC	1 cut(s)	1152
KroNI	GCCGGC	1 cut(s)	1154
Ksp22I	TGATCA	2 cut(s)	613, 739
Kzo9I	GATC	6 cut(s)	292, 445, 613, 739, 974, 2290
LguI	GCTCTTC	1 cut(s)	1473
LmnI	GCTCC	5 cut(s)	337, 564, 595, 2658, 2681
LweI	GCATC	6 cut(s)	359, 766, 865, 1574, 1988, 2647
MaeI	CTAG	5 cut(s)	303, 1944, 1956, 2118, 2427
MaeII	ACGT	3 cut(s)	142, 1689, 1968
MaeIII	GTNAC	4 cut(s)	155, 798, 2160, 2489
MalI	GATC	6 cut(s)	294, 447, 615, 741, 976, 2292
MbiI	CCGCTC	1 cut(s)	2684
MboI	GATC	6 cut(s)	292, 445, 613, 739, 974, 2290
MboII	GAAGA	9 cut(s)	183, 1070, 1132, 1238, 1453, 1490, 1506, 2106, 2696
MflI	RGATCY	1 cut(s)	974
MhlI	GDGCHC	4 cut(s)	40, 600, 1015, 2312
Mly113I	GGCGCC	1 cut(s)	1471
MlyI	GAGTC	2 cut(s)	296, 2128
MmeI	TCCRAC	4 cut(s)	559, 573, 2370, 2584
Mph1103I	ATGCAT	3 cut(s)	352, 1567, 2640
MroNI	GCCGGC	1 cut(s)	1152
MroXI	GAANNNNTTC	1 cut(s)	2581
MseI	TTAA	9 cut(s)	201, 908, 1260, 1719, 2355, 2553, 2688, 2697, 2731
MslI	CAYNNNNRTG	5 cut(s)	164, 2006, 2229, 2339, 2444
MspI	CCGG	2 cut(s)	1153, 1252
Mva1269I	GAATGC	1 cut(s)	84
MvaI	CCWGG	9 cut(s)	249, 359, 369, 1002, 1215, 1547, 1646, 2041, 2109
NaeI	GCCGGC	1 cut(s)	1154
NarI	GGCGCC	1 cut(s)	1471
NciI	CCSGG	1 cut(s)	1252
NcoI	CCATGG	1 cut(s)	2547
NdeII	GATC	6 cut(s)	292, 445, 613, 739, 974, 2290
NgoMIV	GCCGGC	1 cut(s)	1152
NmeAIII	GCCGAG	3 cut(s)	1120, 1606, 1775
NmuCI	GTSAC	1 cut(s)	2160
NsiI	ATGCAT	3 cut(s)	352, 1567, 2640
NspI	RCATGY	2 cut(s)	169, 811
NspV	TTCGAA	1 cut(s)	1417
OliI	CACNNNNGTG	2 cut(s)	2006, 2229
PaeR7I	CTCGAG	1 cut(s)	2622
PagI	TCATGA	1 cut(s)	2337
PceI	AGGCCT	1 cut(s)	1054
PciI	ACATGT	1 cut(s)	807
PciSI	GCTCTTC	1 cut(s)	1473
PctI	GAATGC	1 cut(s)	84
PdiI	GCCGGC	1 cut(s)	1154
PdmI	GAANNNNTTC	1 cut(s)	2581
PfeI	GAWTC	7 cut(s)	223, 469, 867, 961, 1419, 2098, 2300
PflFI	GACNNNGTC	1 cut(s)	2535
PflMI	CCANNNNNTGG	1 cut(s)	2108
PleI	GAGTC	2 cut(s)	295, 2128
PluTI	GGCGCC	1 cut(s)	1474
PpsI	GAGTC	2 cut(s)	295, 2128
Ppu21I	YACGTR	2 cut(s)	143, 1690
PscI	ACATGT	1 cut(s)	807
PsiI	TTATAA	1 cut(s)	345
Psp124BI	GAGCTC	1 cut(s)	2312
Psp6I	CCWGG	9 cut(s)	247, 357, 367, 1000, 1213, 1545, 1644, 2039, 2107
PspFI	CCCAGC	1 cut(s)	729
PspGI	CCWGG	9 cut(s)	247, 357, 367, 1000, 1213, 1545, 1644, 2039, 2107
PspPI	GGNCC	7 cut(s)	14, 98, 245, 930, 1766, 1879, 1940
PstI	CTGCAG	1 cut(s)	1534
PstNI	CAGNNNCTG	1 cut(s)	1763
PsuI	RGATCY	1 cut(s)	974
PsyI	GACNNNGTC	1 cut(s)	2535
RsaI	GTAC	8 cut(s)	6, 145, 373, 939, 1107, 1282, 1807, 2122
RsaNI	GTAC	8 cut(s)	5, 144, 372, 938, 1106, 1281, 1806, 2121
RseI	CAYNNNNRTG	5 cut(s)	164, 2006, 2229, 2339, 2444
SacI	GAGCTC	1 cut(s)	2312
SapI	GCTCTTC	1 cut(s)	1473
SaqAI	TTAA	9 cut(s)	201, 908, 1260, 1719, 2355, 2553, 2688, 2697, 2731
Sau3AI	GATC	6 cut(s)	292, 445, 613, 739, 974, 2290
Sau96I	GGNCC	7 cut(s)	14, 98, 245, 930, 1766, 1879, 1940
ScaI	AGTACT	1 cut(s)	1807
SchI	GAGTC	2 cut(s)	296, 2128
SduI	GDGCHC	4 cut(s)	40, 600, 1015, 2312
SfaNI	GCATC	6 cut(s)	359, 766, 865, 1574, 1988, 2647
SfcI	CTRYAG	2 cut(s)	1530, 1700
SfoI	GGCGCC	1 cut(s)	1472
Sfr274I	CTCGAG	1 cut(s)	2622
SfuI	TTCGAA	1 cut(s)	1417
SinI	GGWCC	4 cut(s)	98, 245, 1766, 1940
SlaI	CTCGAG	1 cut(s)	2622
SmiMI	CAYNNNNRTG	5 cut(s)	164, 2006, 2229, 2339, 2444
SmlI	CTYRAG	4 cut(s)	464, 825, 2136, 2622
SmoI	CTYRAG	4 cut(s)	464, 825, 2136, 2622
SnaBI	TACGTA	1 cut(s)	1690
SseBI	AGGCCT	1 cut(s)	1054
SsiI	CCGC	5 cut(s)	17, 710, 953, 1219, 2684
SspDI	GGCGCC	1 cut(s)	1470
SspI	AATATT	1 cut(s)	1069
SspMI	CTAG	5 cut(s)	303, 1944, 1956, 2118, 2427
SstI	GAGCTC	1 cut(s)	2312
StuI	AGGCCT	1 cut(s)	1054
StyI	CCWWGG	2 cut(s)	1284, 2547
TaaI	ACNGT	8 cut(s)	438, 507, 1237, 1876, 2072, 2453, 2462, 2489
TaiI	ACGT	3 cut(s)	145, 1692, 1971
TaqI	TCGA	7 cut(s)	559, 1417, 1492, 1795, 2054, 2177, 2623
TatI	WGTACW	3 cut(s)	937, 1805, 2120
TauI	GCSGC	2 cut(s)	19, 712
TfiI	GAWTC	7 cut(s)	223, 469, 867, 961, 1419, 2098, 2300
Tru1I	TTAA	9 cut(s)	201, 908, 1260, 1719, 2355, 2553, 2688, 2697, 2731
Tru9I	TTAA	9 cut(s)	201, 908, 1260, 1719, 2355, 2553, 2688, 2697, 2731
TscAI	CASTG	1 cut(s)	996
TseFI	GTSAC	1 cut(s)	2160
Tsp45I	GTSAC	1 cut(s)	2160
TspGWI	ACGGA	1 cut(s)	114
TspRI	CASTG	1 cut(s)	996
Tth111I	GACNNNGTC	1 cut(s)	2535
Van91I	CCANNNNNTGG	1 cut(s)	2108
VneI	GTGCAC	1 cut(s)	1011
VpaK11BI	GGWCC	4 cut(s)	98, 245, 1766, 1940
XapI	RAATTY	9 cut(s)	70, 229, 475, 1073, 1085, 1885, 2026, 2035, 2239
XceI	RCATGY	2 cut(s)	169, 811
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2198, 2669
XhoI	CTCGAG	1 cut(s)	2622
XmiI	GTMKAC	1 cut(s)	1699
XmnI	GAANNNNTTC	1 cut(s)	2581
XspI	CTAG	5 cut(s)	303, 1944, 1956, 2118, 2427
ZrmI	AGTACT	1 cut(s)	1807
Zsp2I	ATGCAT	3 cut(s)	352, 1567, 2640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.